mRNA_H-paniculata_contig14.2441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2441.1
Unique NamemRNA_H-paniculata_contig14.2441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:33817..34196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size382
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.3296452-CDS-H-paniculata_contig14:33816..341941622929111.3296452-CDS-H-paniculata_contig14:33816..34194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 33817..34194 +
1691480735.7380307-CDS-H-paniculata_contig14:33816..341941691480735.7380307-CDS-H-paniculata_contig14:33816..34194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 33817..34194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2441.1prot_H-paniculata_contig14.2441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 33817..34194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2441.1

>prot_H-paniculata_contig14.2441.1 ID=prot_H-paniculata_contig14.2441.1|Name=mRNA_H-paniculata_contig14.2441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
RIRASVVHAPCDSLLLLLSSPPCLAAKSSTSSGCVPACLTSLGASTPIFS
LPLSRGCSSWLSSCSAVATISSMICEALSLLASSANVIAAPSSCISLGNV
EEAAGPFATPGASGDVSPSVLSARSS
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mRNA from alignment at H-paniculata_contig14:33817..34196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2441.1 ID=mRNA_H-paniculata_contig14.2441.1|Name=mRNA_H-paniculata_contig14.2441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=380bp|location=Sequence derived from alignment at H-paniculata_contig14:33817..34196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATCCGTGCGTCGGTAGTACACGCGCCCTGCGACTCGTTGCTGCTGCT
GTTATCGTCGCCACCATGCTTGGCGGCAAAATCTTCGACATCGTCCGGCT
GCGTTCCTGCCTGTCTGACATCGCTCGGTGCTTCAACCCCGATTTTTTCG
CTACCGTTGTCCAGGGGCTGTTCTTCGTGGTTATCGTCTTGTTCCGCAGT
TGCGACGATTTCCTCGATGATATGCGAGGCCTTGTCGCTGCTGGCCAGCT
CGGCAAACGTCATTGCAGCACCGTCGTCATGTATTTCATTGGGCAATGTC
GAGGAGGCTGCCGGCCCCTTTGCCACACCCGGTGCCTCGGGGGATGTTTC
GCCGTCGGTTTTGTCGGCCAGGAGTAGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14:33817..34196+

>mRNA_H-paniculata_contig14.2441.1 ID=mRNA_H-paniculata_contig14.2441.1|Name=mRNA_H-paniculata_contig14.2441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig14:33817..34196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATCCGTGCGTCGGTAGTACACGCGCCCTGCGACTCGTTGCTGCTGCT
GTTATCGTCGCCACCATGCTTGGCGGCAAAATCTTCGACATCGTCCGGCT
GCGTTCCTGCCTGTCTGACATCGCTCGGTGCTTCAACCCCGATTTTTTCG
CTACCGTTGTCCAGGGGCTGTTCTTCGTGGTTATCGTCTTGTTCCGCAGT
TGCGACGATTTCCTCGATGATATGCGAGGCCTTGTCGCTGCTGGCCAGCT
CGGCAAACGTCATTGCAGCACCGTCGTCATGTATTTCATTGGGCAATGTC
GAGGAGGCTGCCGGCCCCTTTGCCACACCCGGTGCCTCGGGGGATGTTTC
GCCGTCGGTTTTGTCGGCCAGGAGTAGTCGGATCCGTGCGTCGGTAGTAC
ACGCGCCCTGCGACTCGTTGCTGCTGCTGTTATCGTCGCCACCATGCTTG
GCGGCAAAATCTTCGACATCGTCCGGCTGCGTTCCTGCCTGTCTGACATC
GCTCGGTGCTTCAACCCCGATTTTTTCGCTACCGTTGTCCAGGGGCTGTT
CTTCGTGGTTATCGTCTTGTTCCGCAGTTGCGACGATTTCCTCGATGATA
TGCGAGGCCTTGTCGCTGCTGGCCAGCTCGGCAAACGTCATTGCAGCACC
GTCGTCATGTATTTCATTGGGCAATGTCGAGGAGGCTGCCGGCCCCTTTG
CCACACCCGGTGCCTCGGGGGATGTTTCGCCGTCGGTTTTGTCGGCCAGG
AGTAGT
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