mRNA_H-paniculata_contig13994.2432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig13994.2432.1
Unique Name	mRNA_H-paniculata_contig13994.2432.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 254 bits (648), Expect = 8.460e-85
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 1

Query:   34 RIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            +IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   13 KIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.510e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 251 bits (642), Expect = 5.310e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: B0WZ61_CULQU (Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=B0WZ61_CULQU)

HSP 1 Score: 251 bits (642), Expect = 7.190e-84
Identity = 136/148 (91.89%), Postives = 141/148 (95.27%), Query Frame = 1

Query:    4 FEFKPASVRSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            FE+K  S+    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 FEYKSTSI---AMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 151

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A2A2JS84_9BILA (Histone domain-containing protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2JS84_9BILA)

HSP 1 Score: 252 bits (643), Expect = 2.820e-83
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 1

Query:    1 SFEFKPASVRS-RIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            S  F P+++ S  +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   53 SSSFHPSALNSVSVMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERN 202

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A164UA40_9CRUS (Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A164UA40_9CRUS)

HSP 1 Score: 249 bits (637), Expect = 4.020e-83
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1

Query:   19 ASVRSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            ++ R R MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    8 STFRQRNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 150

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 249 bits (635), Expect = 5.070e-83
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: W5QFR8_SHEEP (Histone H3 n=1 Tax=Ovis aries TaxID=9940 RepID=W5QFR8_SHEEP)

HSP 1 Score: 249 bits (635), Expect = 5.600e-83
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1

Query:   37 IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A0F8C427_LARCR (Histone H3 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8C427_LARCR)

HSP 1 Score: 249 bits (637), Expect = 5.820e-83
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 1

Query:   19 ASVRSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            A  + R MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   19 AGEKERTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161

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BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Match: A0A3B5KMI2_TAKRU (Histone H3 n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A3B5KMI2_TAKRU)

HSP 1 Score: 249 bits (635), Expect = 5.990e-83
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 1

Query:   37 IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 VMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig13994.2432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S1BJN3_9STRA	8.460e-85	98.55	Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A...	[more]
W4GZ05_9STRA	1.510e-84	100.00	Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ...	[more]
A0A6V1P6C6_HETAK	5.310e-84	99.26	Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829...	[more]
B0WZ61_CULQU	7.190e-84	91.89	Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID...	[more]
A0A2A2JS84_9BILA	2.820e-83	91.33	Histone domain-containing protein n=2 Tax=Diplosca...	[more]
A0A164UA40_9CRUS	4.020e-83	93.71	Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A1...	[more]
A7RJG4_NEMVE	5.070e-83	97.79	Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep...	[more]
W5QFR8_SHEEP	5.600e-83	97.08	Histone H3 n=1 Tax=Ovis aries TaxID=9940 RepID=W5Q...	[more]
A0A0F8C427_LARCR	5.820e-83	93.71	Histone H3 n=1 Tax=Larimichthys crocea TaxID=21535...	[more]
A0A3B5KMI2_TAKRU	5.990e-83	96.35	Histone H3 n=2 Tax=Clupeocephala TaxID=186625 RepI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig13994	contig	H-paniculata_contig13994:3106..3555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	256.9
Seed ortholog evalue	5.8e-66
Seed eggNOG ortholog	112098.XP_008614757.1
KEGG ko	ko:K11253
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147
Exons	1
Model size	450
Cds size	450
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929110.900927-CDS-H-paniculata_contig13994:3105..3555	1622929110.900927-CDS-H-paniculata_contig13994:3105..3555	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13994 3106..3555 +
1691480735.600074-CDS-H-paniculata_contig13994:3105..3555	1691480735.600074-CDS-H-paniculata_contig13994:3105..3555	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13994 3106..3555 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig13994.2432.1	prot_H-paniculata_contig13994.2432.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig13994 3106..3555 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig13994:3106..3555+
coding sequence from alignment at H-paniculata_contig13994:3106..3555+

protein sequence of mRNA_H-paniculata_contig13994.2432.1

>prot_H-paniculata_contig13994.2432.1 ID=prot_H-paniculata_contig13994.2432.1|Name=mRNA_H-paniculata_contig13994.2432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
SFEFKPASVRSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK
KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQG
SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*

mRNA from alignment at H-paniculata_contig13994:3106..3555+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig13994.2432.1 ID=mRNA_H-paniculata_contig13994.2432.1|Name=mRNA_H-paniculata_contig13994.2432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=450bp|location=Sequence derived from alignment at H-paniculata_contig13994:3106..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTTCGAATTCAAACCTGCTTCTGTTCGCTCAAGAATTATGGCCCGCAC
GAAGCAAACTGCACGTAAGTCTACCGGAGGCAAGGCCCCCCGTAAGCAGC
TGGCCACTAAGGCTGCCCGTAAGTCTGCCCCCGCTACTGGTGGGGTAAAG
AAGCCCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCG
CTACCAGAAGTCCACAGAGCTGCTCATCCGCAAGCTGCCCTTTCAGCGGC
TTGTTCGTGAGATTGCTCAGGACTTCAAAACCGACCTCAGGTTTCAGGGC
TCAGCTGTGCTTGCTTTGCAGGAGGCCGCCGAGGCGTACCTTGTGGGTCT
ATTTGAGGACACGAACTTGTGCGCTATCCACGCCAAGCGTGTGACGATCA
TGCCCAAGGACATCCAGCTGGCCCGGCGTATTCGTGGCGAGCGCTCCTAG

Coding sequence (CDS) from alignment at H-paniculata_contig13994:3106..3555+

>mRNA_H-paniculata_contig13994.2432.1 ID=mRNA_H-paniculata_contig13994.2432.1|Name=mRNA_H-paniculata_contig13994.2432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig13994:3106..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTTCGAATTCAAACCTGCTTCTGTTCGCTCAAGAATTATGGCCCGCAC
GAAGCAAACTGCACGTAAGTCTACCGGAGGCAAGGCCCCCCGTAAGCAGC
TGGCCACTAAGGCTGCCCGTAAGTCTGCCCCCGCTACTGGTGGGGTAAAG
AAGCCCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCG
CTACCAGAAGTCCACAGAGCTGCTCATCCGCAAGCTGCCCTTTCAGCGGC
TTGTTCGTGAGATTGCTCAGGACTTCAAAACCGACCTCAGGTTTCAGGGC
TCAGCTGTGCTTGCTTTGCAGGAGGCCGCCGAGGCGTACCTTGTGGGTCT
ATTTGAGGACACGAACTTGTGCGCTATCCACGCCAAGCGTGTGACGATCA
TGCCCAAGGACATCCAGCTGGCCCGGCGTATTCGTGGCGAGCGCTCCTAG
TCCTTCGAATTCAAACCTGCTTCTGTTCGCTCAAGAATTATGGCCCGCAC
GAAGCAAACTGCACGTAAGTCTACCGGAGGCAAGGCCCCCCGTAAGCAGC
TGGCCACTAAGGCTGCCCGTAAGTCTGCCCCCGCTACTGGTGGGGTAAAG
AAGCCCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCG
CTACCAGAAGTCCACAGAGCTGCTCATCCGCAAGCTGCCCTTTCAGCGGC
TTGTTCGTGAGATTGCTCAGGACTTCAAAACCGACCTCAGGTTTCAGGGC
TCAGCTGTGCTTGCTTTGCAGGAGGCCGCCGAGGCGTACCTTGTGGGTCT
ATTTGAGGACACGAACTTGTGCGCTATCCACGCCAAGCGTGTGACGATCA
TGCCCAAGGACATCCAGCTGGCCCGGCGTATTCGTGGCGAGCGCTCCTAG