mRNA_H-paniculata_contig13984.2430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13984.2430.1
Unique NamemRNA_H-paniculata_contig13984.2430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.810e-32
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAK-KMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLV 297
            TID EWY++WY++ LLP  K KM WL  + V+ QQD A+PHTG+G P++ N+AG+  GW V+LVTQPAQSPDLNI DLG F+SLK + W     ++D+LV
Sbjct:  265 TIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 84.3 bits (207), Expect = 8.910e-18
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    4 IDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            +D++ YR      ++P  K +W   G+ V  Q D A PH     P+V   A  +GGW + +  QPA SPD N+ DLGFF+S++S   +++  T++DLV+ V   Y+  +  T ++V+ +L
Sbjct:    8 VDKDVYRHALCRMVIPSVKVVW-PSGKRVFLQHDNAKPHVAADDPEVVA-ACSDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTL 125          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 84.3 bits (207), Expect = 5.170e-17
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    4 IDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            +D++ YR      ++P  K +W   G+ V  Q D A PH     P+V   A  +GGW + +  QPA SPD N+ DLGFF+S++S   +++  T++DLV+ V   Y+  +  T ++V+ +L
Sbjct:  109 VDKDVYRHALCRMVIPSVKVVW-PSGKRVFLQHDNAKPHVAADDPEVVA-ACSDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTL 226          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: A0A0N7L738_PLAHL (Predicted methyltransferase n=4 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L738_PLAHL)

HSP 1 Score: 85.9 bits (211), Expect = 5.860e-17
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            T+D + YR+     ++P  K +W   G+ V+ QQD A PH     P+V ++A   GGW +KL  QPA SPD N  DLGFF+SL+S   + +  T++DLV+ V+  +        ++V+ +L
Sbjct:  578 TVDRDIYRQALCRMVIPRIKAVW-PSGKRVVLQQDNAKPHVTVDDPEV-HSACSAGGWDMKLTAQPANSPDFNANDLGFFASLQSLQHKMKAKTIEDLVNNVDDAFAKLHYTALDKVFLTL 696          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4)

HSP 1 Score: 83.6 bits (205), Expect = 9.280e-17
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMWWLE--GEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            +++ +  R+W +  ++P+ +  W  E  G  +  QQD A  H       +    G + G++++L+ QPA SPDLNI DLGFFS+++S   + R  +VD+L++ V   +D Y     E VW +L
Sbjct:  111 SVNRDINRKWLIEKVIPKIQSCWPREELGSAIFIQQDNARSHVDPNDEDIIR-VGTQNGFNIRLMCQPANSPDLNILDLGFFSAIQSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTL 232          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN)

HSP 1 Score: 82.8 bits (203), Expect = 6.910e-16
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    4 IDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            +D++ YR+     ++P  K +W   G+ V  Q D A PH     P+V   A  +GGW + +   PA SPD N+ DLGFF+S++S   +++  T++DLV+ V   Y   +  T ++V+ +L
Sbjct:  249 VDKDVYRQALCRMVIPSVKAVW-PSGKRVFLQHDNAKPHVAADDPEVVA-ACSDGGWDMSIKPPPANSPDFNVNDLGFFTSIQSLQHKKKARTIEDLVNNVEEAYSQLEYSTIDKVFVTL 366          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.850e-15
Identity = 41/124 (33.06%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMW-WLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSLFK 369
            T+  + YR + ++ ++P  +  W   +  ++  QQD A PH     P V   AG +GGW++ L +QPAQSPDLN+ DLG+F++++S   +    T+DDLV  V   ++  +    ++ + +L K
Sbjct:  135 TVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVA-AGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQK 257          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: W2Q5E8_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5E8_PHYPN)

HSP 1 Score: 79.0 bits (193), Expect = 2.180e-15
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMY 318
            ++D E YR+     ++   K++W   G+ V+ Q D A PH     P+V     + G W++K+  QPA  PD N  DLGFF+SL+S  +++R  T++DLV+ V+S +
Sbjct:   52 SVDREIYRQALCRMVISRIKEVW-PSGKRVVLQHDNAKPHVAADDPEVVAACSL-GNWNMKICPQPANLPDFNANDLGFFNSLQSLQYKKRAKTIEDLVNNVDSAF 155          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.050e-15
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSLFKRYNKVL 387
            T+  + Y +  VN +LP     +    + +  QQD A PH  +G P++  +A   G  ++KLVTQPA SPDLNI DLGFF+++++  + +   T+D+ +D V+  +     D  + VW SL +R   ++
Sbjct:  243 TVTRDIYVDALVNHVLPAILTKFPSRWKTLYIQQDGARPHCTDGCPELVASAASFG-LNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATII 370          
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Match: UPI00053F8902 (uncharacterized protein LOC104898738 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8902)

HSP 1 Score: 77.0 bits (188), Expect = 4.310e-15
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 TIDEEWYREWYVNDLLPEAKKMWWLEG-EEVIAQQDRATPHTGEGTPQVSNNAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVDGVNSMYDAYDVDTSERVWQSL 363
            +I +E  RE  +N +LP  ++ W  +G +++   QD A PH      Q +  A  +G + + L+ QPAQSPD+N+ DLGFF ++++   +    T+  LV  VN  YD YD      +W +L
Sbjct:   53 SITKEVIREKLINHILPAIREKWSEDGCKQIWIVQDNARPHIANDNAQFNLEAKKDG-FDIILINQPAQSPDMNVLDLGFFDAIQTLKDQIAPRTMKHLVKAVNKTYDKYDRKLCNHIWLTL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13984.2430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.810e-3257.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A081AGH7_PHYPR8.910e-1835.00Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PEH8_PHYPN5.170e-1735.00Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A0N7L738_PLAHL5.860e-1737.19Predicted methyltransferase n=4 Tax=Plasmopara hal... [more]
UPI00104066C49.280e-1733.33uncharacterized protein LOC114370211 n=1 Tax=Glyci... [more]
W2R9B9_PHYPN6.910e-1634.17DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6A4Z9D8_9STRA1.850e-1533.06Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2Q5E8_PHYPN2.180e-1536.79Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6G0X8U9_9STRA3.050e-1534.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00053F89024.310e-1534.43uncharacterized protein LOC104898738 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13984contigH-paniculata_contig13984:5091..5480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog157072.XP_008870376.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D1IG@1,2SI8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.7615066-CDS-H-paniculata_contig13984:5090..54801622929110.7615066-CDS-H-paniculata_contig13984:5090..5480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13984 5091..5480 +
1691480735.5375876-CDS-H-paniculata_contig13984:5090..54801691480735.5375876-CDS-H-paniculata_contig13984:5090..5480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13984 5091..5480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13984.2430.1prot_H-paniculata_contig13984.2430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13984 5091..5480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13984.2430.1

>prot_H-paniculata_contig13984.2430.1 ID=prot_H-paniculata_contig13984.2430.1|Name=mRNA_H-paniculata_contig13984.2430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
TIDEEWYREWYVNDLLPEAKKMWWLEGEEVIAQQDRATPHTGEGTPQVSN
NAGMEGGWSVKLVTQPAQSPDLNIKDLGFFSSLKSKAWEERYGTVDDLVD
GVNSMYDAYDVDTSERVWQSLFKRYNKVL*
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mRNA from alignment at H-paniculata_contig13984:5091..5480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13984.2430.1 ID=mRNA_H-paniculata_contig13984.2430.1|Name=mRNA_H-paniculata_contig13984.2430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig13984:5091..5480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATTGATGAAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCC GGAGGCTAAGAAGATGTGGTGGCTCGAGGGGGAGGAGGTCATCGCGCAAC AAGACCGCGCGACGCCCCACACGGGCGAGGGTACGCCACAGGTCTCAAAC AATGCGGGGATGGAGGGGGGGTGGAGTGTGAAGCTCGTAACGCAGCCTGC GCAATCGCCTGATCTCAACATCAAGGATTTGGGATTTTTTTCGTCTCTGA AGAGTAAGGCATGGGAAGAGCGTTACGGCACGGTCGACGACCTTGTAGAT GGAGTAAATAGCATGTACGACGCCTACGATGTAGACACGTCAGAGAGAGT ATGGCAAAGTCTGTTCAAGAGGTACAATAAGGTTTTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13984:5091..5480+

>mRNA_H-paniculata_contig13984.2430.1 ID=mRNA_H-paniculata_contig13984.2430.1|Name=mRNA_H-paniculata_contig13984.2430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig13984:5091..5480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATTGATGAAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCC
GGAGGCTAAGAAGATGTGGTGGCTCGAGGGGGAGGAGGTCATCGCGCAAC
AAGACCGCGCGACGCCCCACACGGGCGAGGGTACGCCACAGGTCTCAAAC
AATGCGGGGATGGAGGGGGGGTGGAGTGTGAAGCTCGTAACGCAGCCTGC
GCAATCGCCTGATCTCAACATCAAGGATTTGGGATTTTTTTCGTCTCTGA
AGAGTAAGGCATGGGAAGAGCGTTACGGCACGGTCGACGACCTTGTAGAT
GGAGTAAATAGCATGTACGACGCCTACGATGTAGACACGTCAGAGAGAGT
ATGGCAAAGTCTGTTCAAGAGGTACAATAAGGTTTTATGAACCATTGATG
AAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCCGGAGGCTAAG
AAGATGTGGTGGCTCGAGGGGGAGGAGGTCATCGCGCAACAAGACCGCGC
GACGCCCCACACGGGCGAGGGTACGCCACAGGTCTCAAACAATGCGGGGA
TGGAGGGGGGGTGGAGTGTGAAGCTCGTAACGCAGCCTGCGCAATCGCCT
GATCTCAACATCAAGGATTTGGGATTTTTTTCGTCTCTGAAGAGTAAGGC
ATGGGAAGAGCGTTACGGCACGGTCGACGACCTTGTAGATGGAGTAAATA
GCATGTACGACGCCTACGATGTAGACACGTCAGAGAGAGTATGGCAAAGT
CTGTTCAAGAGGTACAATAAGGTTTTATGA
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