mRNA_H-paniculata_contig1396.2419.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1396.2419.1
Unique NamemRNA_H-paniculata_contig1396.2419.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1396.2419.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 496 bits (1278), Expect = 9.810e-168
Identity = 303/536 (56.53%), Postives = 366/536 (68.28%), Query Frame = 3 
Query:  123 MLRNGVMRVAALAQAQRTIGGGI------AAETKAWISSGKGGNE---DNPTPAETKLAFESTDYGKDPASGAELTPAQIAAAEQLKKRAAVSPTSSAATAFPKGNDPRAMFDSLLSQQADDGKASDTIKREVASDTPDTTRVTFRASAYGKDPQAGAALSEKDAAEIEAMRGRLTK---SPAGAAPVHDSRNMFDSDLTQGGGSAPAADSIKRDVVADTPDATRVVFRASAYGKDPQNAAVLSDQDLAEVEAMQNKLS-KAAAAAAPIHDKRNMFDSDLTQSAGSTRPADSIKRDVATDTPDGTRVAFRAMDYGKDPHAARELPREEAAEVEAMKRRVCKA---SADTAPVHDSRSMFDSDLVHGAGSTPLSDSIKRKVSADTPEETRLVFGGSDYGKDPALMAHSAEKQAEIDALAAKAMRRAAADRAGSVAPIHHPRSMFDSDLTQGAGMVRGSDAINREVAAGTPEVTRLAFGGSDYGKDPRSMQRTTEEQAAMDDLAVRAKVA--AARFSKAPVHH-ERSMFDSVLTQGGN 1673
            MLR G+ RVA  A++Q+T   G+      AA T+AW+S+  GG+    D+ TP +TKLAF S+ YGKDPASG E T  + AAA QLK+ A        A A P  +D R MFDS LSQQA+DGK S +IKR+VA+DTPD TRV F A+AYGKDP+A AALS ++A E+EA+R R      + A AAP+HD RNMFDSDLTQG GS  A D+IKRDV  DTPDATRV FRASAYGKDPQ AA LS+Q+ AEVEA++ +   + AAAAAP+HD R+MFDSDLTQ AGST+ +DSIKR+V+ DTPD TRVAFRA  YGKD  AA  L  +EAAEV+ ++ R   A   SAD APVHDSRSMFDSDL  GAG+   SDSIKR V+A+TPE TRLVF GSDYGKDP  + +S +K+AEI ALA    R  A   A + APIHH RSMFDSDL +GAG  R S AI R V   TP +TRL+F GS YG D     +    QA  +     AK+A   A    A VH+ E++M D   +Q G+
Sbjct:    1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPV-HDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAE---RVGAGTPAAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGS 532
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1396.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBI1_ECTSI9.810e-16856.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1396contigH-paniculata_contig1396:23295..25622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Exons2
Model size1758
Cds size1635
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1396.2419.1prot_H-paniculata_contig1396.2419.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1396 23988..25622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0291986-UTR-H-paniculata_contig1396:23294..233421622929109.0291986-UTR-H-paniculata_contig1396:23294..23342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1396 23295..23342 +
1691480735.0767767-UTR-H-paniculata_contig1396:23294..233421691480735.0767767-UTR-H-paniculata_contig1396:23294..23342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1396 23295..23342 +
1622929109.0482144-UTR-H-paniculata_contig1396:23913..239871622929109.0482144-UTR-H-paniculata_contig1396:23913..23987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1396 23914..23987 +
1691480735.0871496-UTR-H-paniculata_contig1396:23913..239871691480735.0871496-UTR-H-paniculata_contig1396:23913..23987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1396 23914..23987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0670629-CDS-H-paniculata_contig1396:23987..256221622929109.0670629-CDS-H-paniculata_contig1396:23987..25622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1396 23988..25622 +
1691480735.0962625-CDS-H-paniculata_contig1396:23987..256221691480735.0962625-CDS-H-paniculata_contig1396:23987..25622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1396 23988..25622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1396.2419.1

>prot_H-paniculata_contig1396.2419.1 ID=prot_H-paniculata_contig1396.2419.1|Name=mRNA_H-paniculata_contig1396.2419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=545bp
MLRNGVMRVAALAQAQRTIGGGIAAETKAWISSGKGGNEDNPTPAETKLA
FESTDYGKDPASGAELTPAQIAAAEQLKKRAAVSPTSSAATAFPKGNDPR
AMFDSLLSQQADDGKASDTIKREVASDTPDTTRVTFRASAYGKDPQAGAA
LSEKDAAEIEAMRGRLTKSPAGAAPVHDSRNMFDSDLTQGGGSAPAADSI
KRDVVADTPDATRVVFRASAYGKDPQNAAVLSDQDLAEVEAMQNKLSKAA
AAAAPIHDKRNMFDSDLTQSAGSTRPADSIKRDVATDTPDGTRVAFRAMD
YGKDPHAARELPREEAAEVEAMKRRVCKASADTAPVHDSRSMFDSDLVHG
AGSTPLSDSIKRKVSADTPEETRLVFGGSDYGKDPALMAHSAEKQAEIDA
LAAKAMRRAAADRAGSVAPIHHPRSMFDSDLTQGAGMVRGSDAINREVAA
GTPEVTRLAFGGSDYGKDPRSMQRTTEEQAAMDDLAVRAKVAAARFSKAP
VHHERSMFDSVLTQGGNSIKDSAGIKREVVADTPELTRLSFFGST
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mRNA from alignment at H-paniculata_contig1396:23295..25622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1396.2419.1 ID=mRNA_H-paniculata_contig1396.2419.1|Name=mRNA_H-paniculata_contig1396.2419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2328bp|location=Sequence derived from alignment at H-paniculata_contig1396:23295..25622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTCTCCGTCCTGCCTGTGTGAGTGGCGTATTACGCACAGTTAAGGT
GAGGCTTGATTCTGTTATTGAAAATGTCGTTATGCCCTTGGGAAACGCTT
CGCACCAACCTTTCCGCTCACACTTTAGAAACCTACTTTTTATTTTCAAT
CATCCTGTGTATGTGATACGTGTGTACCTTGTCACAATAAATGAGAGAGT
AAACTAATGTGCCTGGATGGATATGCCACGAGTAACAAGCTGCGCTAGAT
ACTAGGGGGGCGTGAGTGCCCACTCATAAGTCTTGGATAATGTCTCTTAA
TGATGTATCCATAGGGCAAAGCGTTTGTTTCTAGAGTGAACTTTTGCTGA
ACCCAACCCCTCAGTACCACTTCCTCTGTCTGTATCTGGGTTTCTGTGTC
TGCTCTTAGCTACAGTGGGACAAACTGGATTCAAGTGATCGAACTGTGAA
GTGACCTTGTACACCAACCATACTCTGTTCTCTCGCCCCACGTGTTCCCG
CTCGAGTGGAGCCAAGGCAAGTGGGTTAAAAATATCCCCTGCCTTTCGCA
GTGTTTCACATGTGTCTCTGAAAACCCCGTTGTGTTCTGCCGCCACCGTT
ATCCACTTCAATCTGGCAGCGGCAAGTTGAAGGGACAGCATCACAACAAT
ATTGTTTTGTCCTCCCTGTCTTCTGGCTCCTCTAAAGAAAAACATGTTGC
GAAACGGTGTTATGAGGGTTGCGGCGCTCGCCCAAGCCCAGAGGACGATC
GGCGGTGGCATTGCTGCGGAGACCAAGGCATGGATTTCTTCCGGAAAAGG
TGGCAATGAGGATAACCCTACCCCGGCCGAGACGAAATTGGCCTTCGAGT
CCACAGACTACGGAAAGGACCCGGCCTCGGGAGCGGAACTGACGCCCGCC
CAAATCGCGGCCGCCGAGCAACTAAAGAAACGGGCTGCGGTGTCGCCGAC
CTCCTCTGCGGCGACCGCTTTCCCGAAAGGCAATGACCCACGGGCGATGT
TCGACTCATTGCTATCCCAGCAAGCGGACGACGGGAAAGCGTCGGACACG
ATTAAGCGAGAGGTAGCCTCCGACACCCCAGACACAACGCGAGTAACCTT
TCGAGCTTCGGCTTACGGGAAAGACCCGCAAGCCGGCGCAGCACTCTCGG
AGAAAGATGCGGCGGAAATAGAGGCCATGCGAGGTAGATTAACCAAGAGC
CCTGCTGGAGCAGCTCCTGTCCACGATAGCCGGAACATGTTCGACTCCGA
CCTTACCCAAGGAGGTGGGAGTGCGCCAGCCGCTGACTCGATCAAGCGCG
ACGTAGTGGCGGACACGCCAGACGCCACACGAGTAGTTTTCCGCGCTTCT
GCTTACGGGAAAGACCCTCAGAATGCGGCGGTACTCTCTGATCAGGATCT
GGCGGAAGTGGAAGCTATGCAAAATAAGTTGAGCAAGGCCGCTGCTGCAG
CTGCACCCATCCACGACAAACGGAATATGTTCGACTCCGACCTTACCCAA
AGCGCAGGAAGCACGCGACCTGCTGACTCGATCAAGCGCGACGTAGCTAC
GGACACGCCAGATGGTACGCGTGTGGCATTCCGTGCAATGGATTACGGAA
AGGACCCCCACGCTGCGAGAGAACTCCCGCGGGAAGAAGCCGCGGAGGTC
GAGGCCATGAAACGCAGGGTCTGCAAAGCTTCAGCTGATACGGCGCCCGT
TCACGACAGCCGGAGCATGTTCGACTCGGACCTTGTCCACGGGGCCGGGA
GCACGCCGTTGTCCGATTCTATCAAGCGCAAAGTATCGGCGGACACGCCA
GAAGAGACGCGCTTGGTTTTCGGGGGCTCAGACTACGGAAAAGATCCCGC
ATTAATGGCTCATTCGGCAGAGAAACAGGCCGAGATAGATGCCCTGGCAG
CGAAAGCCATGCGGCGGGCAGCGGCAGACAGAGCAGGGTCGGTGGCCCCA
ATTCACCACCCCCGATCCATGTTTGATTCGGACCTCACCCAAGGCGCCGG
TATGGTTAGGGGCTCTGACGCTATCAATCGCGAGGTGGCCGCCGGCACTC
CGGAGGTCACCCGTCTTGCGTTCGGGGGGTCGGACTATGGGAAGGATCCG
CGCTCGATGCAGCGCACAACCGAAGAGCAGGCAGCGATGGATGACCTGGC
GGTCAGGGCGAAGGTGGCGGCCGCGCGATTCAGCAAGGCTCCGGTCCACC
ACGAAAGGTCCATGTTCGACTCGGTCTTGACCCAGGGGGGCAATTCCATC
AAGGACTCGGCTGGGATCAAACGGGAGGTTGTTGCGGATACCCCGGAGTT
GACCCGCCTTAGCTTCTTCGGGAGCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig1396:23295..25622+

>mRNA_H-paniculata_contig1396.2419.1 ID=mRNA_H-paniculata_contig1396.2419.1|Name=mRNA_H-paniculata_contig1396.2419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3270bp|location=Sequence derived from alignment at H-paniculata_contig1396:23295..25622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCGAAACGGTGTTATGAGGGTTGCGGCGCTCGCCCAAGCCCAGAG
GACGATCGGCGGTGGCATTGCTGCGGAGACCAAGGCATGGATTTCTTCCG
GAAAAGGTGGCAATGAGGATAACCCTACCCCGGCCGAGACGAAATTGGCC
TTCGAGTCCACAGACTACGGAAAGGACCCGGCCTCGGGAGCGGAACTGAC
GCCCGCCCAAATCGCGGCCGCCGAGCAACTAAAGAAACGGGCTGCGGTGT
CGCCGACCTCCTCTGCGGCGACCGCTTTCCCGAAAGGCAATGACCCACGG
GCGATGTTCGACTCATTGCTATCCCAGCAAGCGGACGACGGGAAAGCGTC
GGACACGATTAAGCGAGAGGTAGCCTCCGACACCCCAGACACAACGCGAG
TAACCTTTCGAGCTTCGGCTTACGGGAAAGACCCGCAAGCCGGCGCAGCA
CTCTCGGAGAAAGATGCGGCGGAAATAGAGGCCATGCGAGGTAGATTAAC
CAAGAGCCCTGCTGGAGCAGCTCCTGTCCACGATAGCCGGAACATGTTCG
ACTCCGACCTTACCCAAGGAGGTGGGAGTGCGCCAGCCGCTGACTCGATC
AAGCGCGACGTAGTGGCGGACACGCCAGACGCCACACGAGTAGTTTTCCG
CGCTTCTGCTTACGGGAAAGACCCTCAGAATGCGGCGGTACTCTCTGATC
AGGATCTGGCGGAAGTGGAAGCTATGCAAAATAAGTTGAGCAAGGCCGCT
GCTGCAGCTGCACCCATCCACGACAAACGGAATATGTTCGACTCCGACCT
TACCCAAAGCGCAGGAAGCACGCGACCTGCTGACTCGATCAAGCGCGACG
TAGCTACGGACACGCCAGATGGTACGCGTGTGGCATTCCGTGCAATGGAT
TACGGAAAGGACCCCCACGCTGCGAGAGAACTCCCGCGGGAAGAAGCCGC
GGAGGTCGAGGCCATGAAACGCAGGGTCTGCAAAGCTTCAGCTGATACGG
CGCCCGTTCACGACAGCCGGAGCATGTTCGACTCGGACCTTGTCCACGGG
GCCGGGAGCACGCCGTTGTCCGATTCTATCAAGCGCAAAGTATCGGCGGA
CACGCCAGAAGAGACGCGCTTGGTTTTCGGGGGCTCAGACTACGGAAAAG
ATCCCGCATTAATGGCTCATTCGGCAGAGAAACAGGCCGAGATAGATGCC
CTGGCAGCGAAAGCCATGCGGCGGGCAGCGGCAGACAGAGCAGGGTCGGT
GGCCCCAATTCACCACCCCCGATCCATGTTTGATTCGGACCTCACCCAAG
GCGCCGGTATGGTTAGGGGCTCTGACGCTATCAATCGCGAGGTGGCCGCC
GGCACTCCGGAGGTCACCCGTCTTGCGTTCGGGGGGTCGGACTATGGGAA
GGATCCGCGCTCGATGCAGCGCACAACCGAAGAGCAGGCAGCGATGGATG
ACCTGGCGGTCAGGGCGAAGGTGGCGGCCGCGCGATTCAGCAAGGCTCCG
GTCCACCACGAAAGGTCCATGTTCGACTCGGTCTTGACCCAGGGGGGCAA
TTCCATCAAGGACTCGGCTGGGATCAAACGGGAGGTTGTTGCGGATACCC
CGGAGTTGACCCGCCTTAGCTTCTTCGGGAGCACCATGTTGCGAAACGGT
GTTATGAGGGTTGCGGCGCTCGCCCAAGCCCAGAGGACGATCGGCGGTGG
CATTGCTGCGGAGACCAAGGCATGGATTTCTTCCGGAAAAGGTGGCAATG
AGGATAACCCTACCCCGGCCGAGACGAAATTGGCCTTCGAGTCCACAGAC
TACGGAAAGGACCCGGCCTCGGGAGCGGAACTGACGCCCGCCCAAATCGC
GGCCGCCGAGCAACTAAAGAAACGGGCTGCGGTGTCGCCGACCTCCTCTG
CGGCGACCGCTTTCCCGAAAGGCAATGACCCACGGGCGATGTTCGACTCA
TTGCTATCCCAGCAAGCGGACGACGGGAAAGCGTCGGACACGATTAAGCG
AGAGGTAGCCTCCGACACCCCAGACACAACGCGAGTAACCTTTCGAGCTT
CGGCTTACGGGAAAGACCCGCAAGCCGGCGCAGCACTCTCGGAGAAAGAT
GCGGCGGAAATAGAGGCCATGCGAGGTAGATTAACCAAGAGCCCTGCTGG
AGCAGCTCCTGTCCACGATAGCCGGAACATGTTCGACTCCGACCTTACCC
AAGGAGGTGGGAGTGCGCCAGCCGCTGACTCGATCAAGCGCGACGTAGTG
GCGGACACGCCAGACGCCACACGAGTAGTTTTCCGCGCTTCTGCTTACGG
GAAAGACCCTCAGAATGCGGCGGTACTCTCTGATCAGGATCTGGCGGAAG
TGGAAGCTATGCAAAATAAGTTGAGCAAGGCCGCTGCTGCAGCTGCACCC
ATCCACGACAAACGGAATATGTTCGACTCCGACCTTACCCAAAGCGCAGG
AAGCACGCGACCTGCTGACTCGATCAAGCGCGACGTAGCTACGGACACGC
CAGATGGTACGCGTGTGGCATTCCGTGCAATGGATTACGGAAAGGACCCC
CACGCTGCGAGAGAACTCCCGCGGGAAGAAGCCGCGGAGGTCGAGGCCAT
GAAACGCAGGGTCTGCAAAGCTTCAGCTGATACGGCGCCCGTTCACGACA
GCCGGAGCATGTTCGACTCGGACCTTGTCCACGGGGCCGGGAGCACGCCG
TTGTCCGATTCTATCAAGCGCAAAGTATCGGCGGACACGCCAGAAGAGAC
GCGCTTGGTTTTCGGGGGCTCAGACTACGGAAAAGATCCCGCATTAATGG
CTCATTCGGCAGAGAAACAGGCCGAGATAGATGCCCTGGCAGCGAAAGCC
ATGCGGCGGGCAGCGGCAGACAGAGCAGGGTCGGTGGCCCCAATTCACCA
CCCCCGATCCATGTTTGATTCGGACCTCACCCAAGGCGCCGGTATGGTTA
GGGGCTCTGACGCTATCAATCGCGAGGTGGCCGCCGGCACTCCGGAGGTC
ACCCGTCTTGCGTTCGGGGGGTCGGACTATGGGAAGGATCCGCGCTCGAT
GCAGCGCACAACCGAAGAGCAGGCAGCGATGGATGACCTGGCGGTCAGGG
CGAAGGTGGCGGCCGCGCGATTCAGCAAGGCTCCGGTCCACCACGAAAGG
TCCATGTTCGACTCGGTCTTGACCCAGGGGGGCAATTCCATCAAGGACTC
GGCTGGGATCAAACGGGAGGTTGTTGCGGATACCCCGGAGTTGACCCGCC
TTAGCTTCTTCGGGAGCACC
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