mRNA_H-paniculata_contig1395.2415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1395.2415.1
Unique NamemRNA_H-paniculata_contig1395.2415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: D7FXX6_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX6_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 1.920e-83
Identity = 129/174 (74.14%), Postives = 140/174 (80.46%), Query Frame = 3 
Query:  210 MSLTCAKRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYASKTWP 731
            MSLT AKRLRKEMH LQ++PPD DI +  DEDDIR W A+IRGPPDTPFAGG                 +YELKI VGQQYPM+PP M FVTKVFHPNVH +TGEICL+ILKK+WSPAWSLQGACRAILALL+HPEADSPLNCDAGNMVR GDMRAFRS+AR Y EE ASK WP
Sbjct:    1 MSLTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGG-----------------IYELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELASKDWP 157
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A7S2UYB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB8_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.700e-62
Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = 3 
Query:  210 MSLTCAKRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYASKTWP 731
            M+L  +KRLRKE+ NL+ +P DSDIFL PD ++IR+    IRGPP TPF                   G+YEL+I + Q YPM+PP+M FVTK+FHPNVH DTGEICLDILK EWSPAW LQ ACRA++AL+S P ADSPLNCDAGNM+R GDMRA+ ++A  Y+ EYA K+ P
Sbjct:    1 MALASSKRLRKEIQNLKKSP-DSDIFLIPDPNNIRSIQGFIRGPPSTPF-----------------ENGIYELQIDISQNYPMVPPSMKFVTKIFHPNVHFDTGEICLDILKSEWSPAWGLQPACRAVIALMSDPAADSPLNCDAGNMIRAGDMRAYHAVASMYQIEYALKSVP 156
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A6S9GG99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GG99_HETAK)

HSP 1 Score: 201 bits (511), Expect = 5.260e-58
Identity = 99/168 (58.93%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  228 KRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYASKTWP 731
            KRL+KE+ NL+ +  D+DI L  + +++R     IRGPPDTPFAGG                 +YELKI +GQQYPM+PP M FVTK+FHPN+H DTGEICLDILKKEWSPAW LQ ACRAI+A++S P ADSPLNCDAGNMVR  DMRA+ S+A  Y+ E+A    P
Sbjct:    5 KRLKKELENLKKSD-DNDIKLYENPENMRKIQGFIRGPPDTPFAGG-----------------IYELKIDIGQQYPMVPPTMEFVTKIFHPNIHFDTGEICLDILKKEWSPAWGLQAACRAIIAIMSDPAADSPLNCDAGNMVRAEDMRAYGSIASMYRIEHALTEMP 154
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A835Z5T9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.830e-57
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 3 
Query:  210 MSLTCAKRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYASKTWP 731
            MS+ C KRLR E   ++S   D DIFL   E DIR W AHIRGPP TP+ GG                 V+EL + VG QYP++PP + FVT+VFHPNVH  TG ICLD+L + W+PAW LQ  CRA+LALLS P ADSPLNCDAGNM+R GD  AF SMAR Y  E+A++  P
Sbjct:    1 MSMACFKRLRME---IKSMSDDPDIFLESSESDIRRWKAHIRGPPGTPYEGG-----------------VFELDLTVGMQYPLVPPAVTFVTRVFHPNVHFTTGAICLDVLSRAWTPAWGLQATCRALLALLSDPAADSPLNCDAGNMIRAGDACAFESMARMYTLEHAARDMP 154
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A448YY37_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY37_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.040e-56
Identity = 97/176 (55.11%), Postives = 122/176 (69.32%), Query Frame = 3 
Query:  210 MSLTCAKRLRKEMHNLQ-SAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYAS-KTWP 731
            ++L  AKRLRKE+ NL+ +  PD DI+L PD ++I  W A +RGP DTP++GG                 V++L I  G  YP+ PP++ FVT+VFHPNVH  TG++CLDILKKEWSPAW +Q ACRAILALLS P+ADSPLNCDAGNM+RGGDM A+ + AR +  E A    WP
Sbjct:    3 LNLAAAKRLRKELQNLKRTKEPDPDIYLIPDGNNILQWTALLRGPSDTPYSGG-----------------VFQLAIDCGADYPLAPPSITFVTRVFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMFTVENAMFLAWP 161
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A1E7FW51_9STRA (Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW51_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.820e-56
Identity = 98/174 (56.32%), Postives = 117/174 (67.24%), Query Frame = 3 
Query:  216 LTCAKRLRKEMHNLQSAPP-DSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYAS-KTWP 731
            L  AKRLRKE+ NL+ A   D DIFL PD D+I  W A ++GP DTP+A                  GV++L I  G  YP+ PP + F+TK+FHPNVH  TG++CLDILKKEWSPAW +Q ACRAILALLS P+ADSPLNCDAGNM+RGGDM A+ + AR Y  E A    WP
Sbjct:    5 LAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYA-----------------EGVFQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVENAMFLAWP 161
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A7S1VE29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE29_9STRA)

HSP 1 Score: 192 bits (489), Expect = 9.980e-55
Identity = 96/176 (54.55%), Postives = 118/176 (67.05%), Query Frame = 3 
Query:  216 LTCAKRLRKEMHNLQSAPPD-SDIFLRPD--EDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYAS-KTWP 731
            L  AKRLRKE+ NL+ +  +  D+FLRP   E+ I  W A ++GPPDT + GG                 V++L I  G  YP++PPN+ F+TK+FHPN+H  TG++CLDILKKEWSPAW LQ ACRA+LALLS P+ADSPLNCDAGNMVR  DM A+RS AR Y  E A    WP
Sbjct:    6 LAAAKRLRKELQNLEKSKHEVDDVFLRPTNPEESILMWTALLKGPPDTAYEGG-----------------VFQLNIRCGSDYPLVPPNIKFMTKIFHPNIHFKTGDVCLDILKKEWSPAWGLQAACRAVLALLSDPDADSPLNCDAGNMVRSNDMLAYRSTARMYTVENAMFLEWP 164
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A7S2EUE3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EUE3_TRICV)

HSP 1 Score: 188 bits (477), Expect = 7.380e-53
Identity = 97/179 (54.19%), Postives = 114/179 (63.69%), Query Frame = 3 
Query:  216 LTCAKRLRKEMHNLQSAPPDSD-----------IFLRPDE-DDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYA 716
            L  AKRLRKE+ NL+ A  D             ++LRP   ++I  W A IRGPPDTP+ GG                 V+ L +     YP+ PPN+ FVTKVFHPNVH  TG++CLDILKKEWSPAW LQ ACRA+LALLS P+ADSPLNCDAGNMVR GD+ AFR+ AR Y  E A
Sbjct:   14 LGAAKRLRKELQNLERAALDPSASSSKSSHDEYVYLRPSSPENILRWTALIRGPPDTPYEGG-----------------VFRLDVRCDVDYPLAPPNISFVTKVFHPNVHFRTGDVCLDILKKEWSPAWGLQAACRAVLALLSDPDADSPLNCDAGNMVRNGDLAAFRTTARMYTLENA 175
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A1Z5JZI5_FISSO (Peroxin-4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZI5_FISSO)

HSP 1 Score: 187 bits (476), Expect = 8.780e-53
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 3 
Query:  213 SLTCAKRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGG-DMRAFRSMARFYKEEYAS-KTWPPK 737
            SL  AKRLRKE+  LQ +P D+DI L  + D++  W A IRGP +TP+ GG                  +EL I  G  YP+ PP++ FVTK+FHPNVH  TG+ICLDILKKEWSPAW LQ ACRA+LALLS P+ D PLNCDAGNM+RG  D+ A+   A FY  E A   +WP K
Sbjct:    5 SLAAAKRLRKELQVLQKSPDDADILLEHNPDNLLQWKAWIRGPVETPYEGGD-----------------FELDIRCGTDYPLAPPSIKFVTKIFHPNVHFRTGDICLDILKKEWSPAWGLQAACRAVLALLSDPDPDRPLNCDAGNMLRGNADVMAYEDTAAFYTVENAQFLSWPVK 164
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BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Match: A0A4D9CWL3_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWL3_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.250e-52
Identity = 88/151 (58.28%), Postives = 110/151 (72.85%), Query Frame = 3 
Query:  273 DSDIFLRPDEDDIRNWAAHIRGPPDTPFAGGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVHIDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVRGGDMRAFRSMARFYKEEYASKT 725
            D+D+ L P ED+IR W A I+GP +TPF GG+                 +EL+I VG  YP+ PP + FVT +FHPN+H +TGEICLDILKKEWSPAWSLQ ACRA++ALL+ P+A+SPLNCDAGNM+RGGD+RA+ +MAR Y  EY S T
Sbjct:    3 DTDMELWPQEDNIRLWHAIIQGPGETPFEGGT-----------------FELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRGGDVRAYNAMARLYTVEYGSAT 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1395.2415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX6_ECTSI1.920e-8374.14UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2UYB8_9STRA2.700e-6259.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9GG99_HETAK5.260e-5858.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z5T9_9STRA1.830e-5755.75Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A448YY37_9STRA1.040e-5655.11UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A1E7FW51_9STRA6.820e-5656.32Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsi... [more]
A0A7S1VE29_9STRA9.980e-5554.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2EUE3_TRICV7.380e-5354.19Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Z5JZI5_FISSO8.780e-5353.67Peroxin-4 n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A4D9CWL3_9STRA3.250e-5258.28UBC core domain-containing protein n=2 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1395contigH-paniculata_contig1395:19401..26621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue2.3e-69
Seed eggNOG ortholog2880.D7FXX6
KEGG koko:K10689
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0008150,GO:0008152,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030522,GO:0031056,GO:0031058,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0033674,GO:0034097,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051716,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1903320,GO:1903322,GO:1903506,GO:1905269,GO:1990234,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons6
Model size1835
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1395.2415.1prot_H-paniculata_contig1395.2415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1395 22487..25526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.130066-UTR-H-paniculata_contig1395:19400..195781622929108.130066-UTR-H-paniculata_contig1395:19400..19578Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 19401..19578 +
1691480734.6199632-UTR-H-paniculata_contig1395:19400..195781691480734.6199632-UTR-H-paniculata_contig1395:19400..19578Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 19401..19578 +
1622929108.2190864-UTR-H-paniculata_contig1395:22455..224861622929108.2190864-UTR-H-paniculata_contig1395:22455..22486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 22456..22486 +
1691480734.631196-UTR-H-paniculata_contig1395:22455..224861691480734.631196-UTR-H-paniculata_contig1395:22455..22486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 22456..22486 +
1622929108.3477046-UTR-H-paniculata_contig1395:25526..266211622929108.3477046-UTR-H-paniculata_contig1395:25526..26621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 25527..26621 +
1691480734.704278-UTR-H-paniculata_contig1395:25526..266211691480734.704278-UTR-H-paniculata_contig1395:25526..26621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1395 25527..26621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.2479706-CDS-H-paniculata_contig1395:22486..226401622929108.2479706-CDS-H-paniculata_contig1395:22486..22640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 22487..22640 +
1691480734.640275-CDS-H-paniculata_contig1395:22486..226401691480734.640275-CDS-H-paniculata_contig1395:22486..22640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 22487..22640 +
1622929108.2623408-CDS-H-paniculata_contig1395:23679..238311622929108.2623408-CDS-H-paniculata_contig1395:23679..23831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 23680..23831 +
1691480734.655151-CDS-H-paniculata_contig1395:23679..238311691480734.655151-CDS-H-paniculata_contig1395:23679..23831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 23680..23831 +
1622929108.2800477-CDS-H-paniculata_contig1395:24357..244171622929108.2800477-CDS-H-paniculata_contig1395:24357..24417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 24358..24417 +
1691480734.6715398-CDS-H-paniculata_contig1395:24357..244171691480734.6715398-CDS-H-paniculata_contig1395:24357..24417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 24358..24417 +
1622929108.2985218-CDS-H-paniculata_contig1395:24881..249511622929108.2985218-CDS-H-paniculata_contig1395:24881..24951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 24882..24951 +
1691480734.6820745-CDS-H-paniculata_contig1395:24881..249511691480734.6820745-CDS-H-paniculata_contig1395:24881..24951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 24882..24951 +
1622929108.3268955-CDS-H-paniculata_contig1395:25431..255261622929108.3268955-CDS-H-paniculata_contig1395:25431..25526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 25432..25526 +
1691480734.6918712-CDS-H-paniculata_contig1395:25431..255261691480734.6918712-CDS-H-paniculata_contig1395:25431..25526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1395 25432..25526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1395.2415.1

>prot_H-paniculata_contig1395.2415.1 ID=prot_H-paniculata_contig1395.2415.1|Name=mRNA_H-paniculata_contig1395.2415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MSLTCAKRLRKEMHNLQSAPPDSDIFLRPDEDDIRNWAAHIRGPPDTPFA
GGSSAQISMLRHVFLLRTGVYELKIIVGQQYPMLPPNMCFVTKVFHPNVH
IDTGEICLDILKKEWSPAWSLQGACRAILALLSHPEADSPLNCDAGNMVR
GGDMRAFRSMARFYKEEYASKTWPPK*
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mRNA from alignment at H-paniculata_contig1395:19401..26621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1395.2415.1 ID=mRNA_H-paniculata_contig1395.2415.1|Name=mRNA_H-paniculata_contig1395.2415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7221bp|location=Sequence derived from alignment at H-paniculata_contig1395:19401..26621+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATCACGATTGACAAATCAGACAGATAGTGTTCCTGCTCAAGGGTGGT
GCTTGTGATGGAAGTCTCATCAAAGGCTTGATATTTCCAAGAAATCGGTG
CTGGTCAACTAACCGTCGTGCTTTCTGTGACAATCACGCACCTTCCCAAC
AAAACTCGGACTGTGCACATATTTACAGGTGAGGTTTCAACTTGGAGCCT
GGGCTCAGATAGATAGTAGAGCCCGGTGCGGAAATGAGCTCTACTTGTTC
AGTTGTCTGTAGCCTACTGTCCATGTGTGTTAACTGAAAATTATTTTACC
GTATGCTCTGTCTATACAAATGATGCGTTGCGTTTAGGCACGAAAGTATT
GCGGAGATGACGGGGTTCAGTGCTGTGCTCGTGCCTTGATTCTCTTGTCA
AGGGCACTGCAAACTTGTACTTGGTACACTAGTATATTGTCCTTGACCAC
AGTGGACACACAGTTGACTGTCTGTACTGACTGTACTGTAGGTGTACACC
TTTGTTGCAAAACCGAAGGATGTTGTCGATACTGCCAGAGAAATGTAACC
ACACTCACCTGAGAAAACGACATATCCCATCCATCTTGCCCATGAGAGAA
TCACTGCTGCCTCACTACACGCTCGAAAGTAGGTGACCCGAAGTGTTTAG
AGTATGACGGTAGTCCTGGTGACAGGCAAAATAGAGCCAGCTTTTGAGAG
CACCTCTGTTTTGTTAAATAGAACTGCACATCAGTACAGAAAACAATTTA
CCATCAGTGTTGTGCAGGCAGTTTGTGGGGGGATAAATTCTTCTGCACAT
TTCTCGGGGTTTAGACTATATGCACATTAAAAAATCCCCTGTGAGGAGGT
ATTCACATCCACGTGGATATCGACCCCATTTTAGCTGGTCCAAAATTCGT
GATGTTTACATGGCCCTCGGCTTAAGTTGAACTATCGTTCAGTGCAGTTG
TTGACAAAATCCATGTTATAGTTTTCAGCGATCTCTCCTGGTGTAAGTAA
TGGGTAGCCTGCAGCATCATTAAGGCGCTGCTCCACCACCGGACTTCGAG
TCTCACCTACAGGATACCTGGTTTGTTGGTCCTCTTCTAGTTCCCTGCAC
TAATTTTCAATCAAACGGTGCTCTCGAATCGCGAAGAATGTCGTCGTTCT
GTTGTTCTTGACTTGTTGAGAAATCTCTATTCATTTTTTTCTCTCAACAG
TTGACATCTGGTGTTGTTTCAGCGGCGCGGTCTTCTTCTATCCGTGCTAC
TAACTTCTGACTGCCTGTCTTGGATTATTTTTCTGTGCATCTGAGCAGTG
ATACAATCAGATCTTGCATGCAGTAATCATGTGTTCACATACCACTGACT
TTCCCAAACTCGTAGGCAGGGTAAGAGGTGGCGGAGGGTTGTGGTACATG
GCACCATAGAAATATTCAACAGTCGTGTCAACAAGCGATATGAACTTCCA
TGGGTATTCATATTACTGACGATACAGCTCGTAACTGTTAGTTTTGGAAT
ATCACCCCCCTCCCATGCTTTTTTGGGTTGGATTATTTTTTTCGACAGCA
CCACAGTATGGAGTTTCAACTCGCGAGTCCCTCCTTCGCCCAGAGTACTT
CATGTGGAATACCTCGGACTCGCGGTCAGCGACCGCCGAGGTGGACAGCA
GTGCAGTATTACACACATTACAGGACTCAATTCGACGAGTGATTGTAAGT
ATATATGCGACAGGAGGCTTCTTGTGAGCATTCATGTCCAAAATCGGGGA
TGCTGGCAAGGAATCCCCCCCACCCGATCTTTTGCCCTTTGGGGGGAGTT
AGAAACAGTTTTGGGCCTATAGTCCTAAACTCAGAGATTCGAAGTGCCCT
GACTGCGATACAATTTATACCAGTACCCAGTATTTTTATACCCCATCGGT
ACTCTCCAGTTCTATCAATAGTACCCGGTACTGGCGATACGCTCCAGAAC
CGACAGTATCGATTACCCAAAATTCCAGGGCTTGACACGGGTCGACGGGA
CAGAGCGGGACGGGACAGGGTAACACTAGATATTTTGAATGGAACTGGAC
GGACGGGACAAGAGAGGTTTTTGTTTTGACGGGATGGGATGGGTTCCCGT
TGTCAAAATCCCATGGGACCGTCCCATCCCGTCGCGTTCTCGACGTGATG
AATTGACCTACACGGTCCCGTGAAAAATAAGAAAAAATTCCTTGTCCCAT
CCGTCTCCTCCCGATCAAAATATATTGTCACCCCGTCCCGCCCCGTCCGG
TCCCGTATCAAAACCTGAAGACGAGCTTCTTGATTTTTTCACTATAACAG
TACTTACCGACCTGAATTCGGAATTATGGTTGCGACGGTCGAGGTTCATG
TACCACTACTGTTCATACATGTGCGGGGTGGAATCGACGTGCTATGTGCA
ACGTGTAAAGATCCTAAACCTGTTCATCATTGTGGGGCCAGTATCATTTG
GCGGGATCCGTTCGTCTGTAAGGAACGTCCCATGATTATCAGTACAGGAC
AGGAGGGACGGGGCAAGGGGGACTCGTATTTCCACGAGACGGAACCTGGT
TCCCTTCTTGAAATAACAACGAGATGGGATGAGAATCCCGTCCCGTGAGC
GTTCCGTGGTCCCGTACTAAGCTCTAAAAAAAAAGGAGTGTTTCACAGTA
TATTCAGTATCGATTGCTAGAATACTGCGTATTTCGTATTATCGCCAGTG
TCGATTCTCGAAACGACTGTGTATTTTATGGTAATAACTGTACCCACGAT
CCAAAAAACTGAGTGCTTTACGATATCGCCAGCATCGACTCTCCAAAACG
TGGAATAGTTCACAGTATACCCAGTACAGACTCTCCAAAGTACTGGGTAT
TTCACAGTATCTATCGCCAGTATCGACACCCCACCAAACTTCATGTACTG
GGAGCACCTTTGAAACGTTGATTCCTCTAGTCCTCGTAGCTCGTGTATAC
CCACATTTATATCTTTATTGCACACCCACGGTCACCTGCGGCACAAAGCC
AAGCACCTGAAAAATTGCGTCTGTTATATCGTTTCTCGTCTTCTTCATTC
CGCAGATCGAATTCTTCACCTGTCTCCGACCAAGAGATGTCACTAACTTG
TGCGAAGCGATTGAGGAAGGAGATGCACAACCTGCAGAGTGCACCTCCCG
ACAGTGACATCTTTCTCAGGCCCGATGAGGACGACATCCGAAACTGGGCG
GCGCATATCAGGGGGCCGCCGGACACGCCTTTTGCAGGAGGTCGGTGCTC
ATGACAATAAATCGCCAGTGTACCCCATGCCAGCTCGAACCACATTGCAA
TGTTCGATTGGAGTGATTCGATCAACATTGTCGTGCTTGCCAGAGGTTTG
AAAACTCCTGCGACGGACAAAGCTTGTGGTGTTCTCAAACGACTCGTTAC
GTGACAGGTTTTTCCCACTCACTCTCGTTCTTGGCCACACATCTTAAAAC
CGCGGTAACAAGGTATATGTCTGTCCCAAGCCTGTGCTACCTCAGGGTAG
GGGCTGGAAGGGCATGCCTACAACATGAGAATAGACCGATCGAGTACCCA
ATAGCTTTCATGATTGTACAAAAATTTCTGCCTTGCTTGGGAAGAGAGGC
CCAGTTTGTTGGTCGAGGTAGAATTTGCAGATGTGCAGGTCTGGATGAAT
TTTGGAGAAAAAACTCTGTCTTGTGCTCGAGGTCTATGTGTATGTTGTCA
AGCGCTGACGTGAGGAGCAGGCAAAATTAAGAGTAAAGCGTGTGTTGCGA
TCTCTGTGATGTCGACCAGTGTCCCCAGTTTTGGAGCCGCCGTGATATTA
GTGGTGAGGTTGTTCGACAGGGTACTCACGCCAGTATCACGTCCCGCTGT
ATGGGAAACGAATCGAGTTGTTTTTGTATCCACACGTATCGCCAAGCGTT
CGCTAGATTCTAGCGCACGACATATGATATTTAACGTTCGGCTTTTCTCG
CGATCTCTTTTGATGTATATATATATATCATGTTGCTGTCTTCCAGAGTG
TCGTCATCCATCGTACTTGCGTCCTACTGCTCTGACGCACCCATCAGATT
TTCGAGGTGGCATAGCAAGAGTGTTCATGCTCGTTTGTGGTGCCGATCGT
GGATGTTCTTCATTGCAATTTGGGAGAAACGGGCGGATTTTCAGCACAAA
TCTCCCTTCAGTATCCAGTATCAGATGGCAATACTCGCCAGTACTTTCAG
TCCAGCGTGGAAACTCATTACAATCCAGCTGGGATAGCTAATTAGCTAGG
GTGGCGTGGGTTCCACCAGAACTGTGGAGGTTCCTCGGCACAAATCTCCA
TGCTACGACATGTTTTCCTGTTGCGAACAGGCGTGTACGAGCTGAAGATC
ATCGTGGGGCAGCAATACCCAATGCTGCCTCCGAACATGTGCTTTGTGAC
CAAGGTGTTTCATCCCAACGTGCATATCGATGTAAGTGATGAAACATTTT
CGCTCTTGTTACGTGATGAAGTGCCGGATAGCTCCAACGTAGGCTCGGTG
TGTGCATGAACCAATCTAGAGGCTGTGAGCGACATGCGCAAAGTTGCTTG
TCTTTTTTATCCTTCACACGTGCGGCCGAATGAAGCAGTATGGAGCATGC
GTGTTGGTCTCAACATCCATATTACTCTTGTACAGTAGGCGCTGATCGTC
CCATGCCATGAAATCTGCTGTGTCTGCGCCTTCGCGGTGGAGTGCGCTGT
GGTGTTAGCTGTCTTAGCCGCTCGATTCGTGTTTTGAAAGAAGCAATGGA
ATATCGGCCGGACTACGTGAACCAAAAACGTTATGTTTGAAGCATTTAAT
ATGACTCGCCGTCACCATCATCATCGTCGTTGGTACGATAAATGCTCGGT
CGCGAACCGTTCCTAGAACCGGTTGCAGGAACGGGGGATCTCCAAGTAAG
CATTCACGGTCATACTTCTGTATTTTCTCTCTCGGACGTTTTTTTGCCGG
CACACAGACGGGCGAAATCTGTCTAGATATTCTCAAGAAGGAGTGGTCTC
CGGCCTGGAGTCTGCAGGTGACGGTGGTGCAGAATATATGGAAAGCGGTT
TGTTGCGCTTGCTTGCATATTCGCCGATAACCGATGCACCGGTTGCTTGC
AAGTGGCCTGCTGAAACATTCTGTGGGGTTTGCTGTAGACTGTAGAGAGT
GTTACAGCGTATTCACGGCGGGCAACAAAGACGCCGTTCATCCCGGAAAC
CTGAATGAGCCGGAGACCTCGAGCTCCACACACTGTATGATTCTACCCGG
ATTGTAGACGCGGCGTGATACGATTCATGTTGCTGCGTGGCGTTTTCTTT
CGCCATACGGAGGCACAAGGCAGTTCCTCCGACGTTTTGTAGGAAATCGC
GTCAGCGTGTAGGGTGGTAGTAAAACATGCCGCGCCTGATTTTATCCATG
CCAACCCCGAGTGCGTGCTGCTTGCTTCAATGCGATCCCAACTATGTGGT
GTTTACTGAATTTTTGTTTCGCTCGCGGCAGGGCGCGTGCAGGGCAATCT
TGGCCCTGCTGTCGCACCCGGAGGCAGACAGTCCTCTCAACTGTGACGCG
GGTGAGTCTCTGCTCCTGATTTCCACTGGAGAAGTATCTAACATCGCAAA
TAGTTTTTTTTGTTGTTCTTGGGGAGGGAGACGAGGAACAAGGCCACGTC
CAAATAGTGCAAAGAAAATCAAGGTAGTAAGCAATGTCTCGGTCGCTAGG
ACGATGTGTATGGCCGTATTCCTCAATCGTTTGCCCTATTCTGACCGAGG
TAAGATTATTACGAGAACCAAGAAGGCGTTTGAATGCACAATCTCAATCG
TAGCCTATCCGAAAAAGGTGCGTATAGGTCCAGAGAGTCGTGGAATTGGT
TCAAGGCATGATGAAAAAGAAAAACAAAACGATCTTCCGACATCATCATT
ATGCGGTGAGTGTGAGTATTGGTGGCTAGCGCCCATATTTTGCCTCCCGT
TTTCTACTTGTCCCTCCGCCTTTTGTTCTCTCGGTTTCACTTGTTTGACG
TGATGACTGCAATGTTGTTGCCTTTTCCCAGGAAACATGGTGAGAGGAGG
TGACATGCGTGCCTTTCGGTCTATGGCTCGCTTCTACAAGGAAGAATACG
CCTCGAAGACCTGGCCACCGAAATAGTTGACAGAAGCCGGACGCATGACT
TCGCCGTAAACACTGCTCTACTGCAGCGTTGATGCTGGTGGTGGCTTTGG
TATTTCTTCTAACAAAATTCGTCTGTACATAGTTTCGCGCACCAGAAATT
AGAGCAAAGCTCGCTGGCATAGTCACTGACCTGTAGGATTTTTTTTGTAT
GTTGTACAATTATTGTCCTATTGTTATTATCGGGAAATGTGTTGTGGTAG
CTTGACTGGAGCCTCCTTCGATTTTTTTTCAGAAACAGGCCTTGAGAACG
GGGTACACTAGCCTCGCAGTGATTTGCACCTCTATGATAACGCTGCTGTG
TGTGCCACTGAGCGTGTTGCTGGCGTTCAGAGTAGTATCGTGTGATGTGG
TGTGATGTGGTGTTGTCACAGTCGTTGGCAGGCTTCAAGTTTGGTGAAAG
CGTTGCCCCCCAAATTCATTTACAGGAACCAATTCATTTCGCTCAATGAA
TGCCCTCCTGTTAAGGCGGTTCAATGATTTGGATTTTCGCCATCGTTTCG
AATTTTCGCCATCGTTTGGCCAGCCTTTGCTAGTGATTATTGTCTTCCCT
TCGAACTGGGAGCTCTGTCAACGCTAAATCCCCGACGACTAATTTCTCAT
TCAATCTCCGGTCTCGATCAATTACATAACATCATACTGCACTGCATTAT
ATTATGTTGCATTGGCTAGAAAAGAGGGGCGTTGATGATTGCCGTGATTC
GAATGGAGTTCTGTAGAGGTATTTGCTCCTGTTACGTGCTATAATCCCTG
ATGCCACTCATGGAACAGGTATACTTAGATATATTCATTGGGAAATAAGA
ATAGCGACGAACATTTGTACGGTGAGGTACCGCGTAGCGCAAGCAGTCCA
TCTGTATCATACAGTCGACACCGAAGTACAGACACAGTATAATATGCAGT
AGGAATACCAACACGTACCATACACAAAGCACGACAACAGGAGCCCACAC
CAACAATCGCTGAAGGACGCAACCTATACCATGGGAGACAGGCATTTATT
TTCGACGCCCTTACTACGGCTTGCACCTGGCGGAACAGTGGGATGAAGCA
CTAGGATACACTTGTCTCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1395:19401..26621+

>mRNA_H-paniculata_contig1395.2415.1 ID=mRNA_H-paniculata_contig1395.2415.1|Name=mRNA_H-paniculata_contig1395.2415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig1395:19401..26621+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACTAACTTGTGCGAAGCGATTGAGGAAGGAGATGCACAACCTGCA
GAGTGCACCTCCCGACAGTGACATCTTTCTCAGGCCCGATGAGGACGACA
TCCGAAACTGGGCGGCGCATATCAGGGGGCCGCCGGACACGCCTTTTGCA
GGAGATGTCACTAACTTGTGCGAAGCGATTGAGGAAGGAGATGCACAACC
TGCAGAGTGCACCTCCCGACAGTGACATCTTTCTCAGGCCCGATGAGGAC
GACATCCGAAACTGGGCGGCGCATATCAGGGGGCCGCCGGACACGCCTTT
TGCAGGAGGTTCCTCGGCACAAATCTCCATGCTACGACATGTTTTCCTGT
TGCGAACAGGCGTGTACGAGCTGAAGATCATCGTGGGGCAGCAATACCCA
ATGCTGCCTCCGAACATGTGCTTTGTGACCAAGGTGTTTCATCCCAACGT
GCATATCGATGTTCCTCGGCACAAATCTCCATGCTACGACATGTTTTCCT
GTTGCGAACAGGCGTGTACGAGCTGAAGATCATCGTGGGGCAGCAATACC
CAATGCTGCCTCCGAACATGTGCTTTGTGACCAAGGTGTTTCATCCCAAC
GTGCATATCGATACGGGCGAAATCTGTCTAGATATTCTCAAGAAGGAGTG
GTCTCCGGCCTGGAGTCTGCAGACGGGCGAAATCTGTCTAGATATTCTCA
AGAAGGAGTGGTCTCCGGCCTGGAGTCTGCAGGGCGCGTGCAGGGCAATC
TTGGCCCTGCTGTCGCACCCGGAGGCAGACAGTCCTCTCAACTGTGACGC
GGGGCGCGTGCAGGGCAATCTTGGCCCTGCTGTCGCACCCGGAGGCAGAC
AGTCCTCTCAACTGTGACGCGGGAAACATGGTGAGAGGAGGTGACATGCG
TGCCTTTCGGTCTATGGCTCGCTTCTACAAGGAAGAATACGCCTCGAAGA
CCTGGCCACCGAAATAGGAAACATGGTGAGAGGAGGTGACATGCGTGCCT
TTCGGTCTATGGCTCGCTTCTACAAGGAAGAATACGCCTCGAAGACCTGG
CCACCGAAATAG
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