mRNA_H-paniculata_contig13940.2412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13940.2412.1
Unique NamemRNA_H-paniculata_contig13940.2412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: D8LJA2_ECTSI (Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA2_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 2.090e-117
Identity = 188/208 (90.38%), Postives = 195/208 (93.75%), Query Frame = 1 
Query:    1 VNKLDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            VNKLDEAIEREVRPWLDLVDSLRAQGIQDELSLPQ  IAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKR+KPG+ WHGK +V+WKRGPQP AAG V+S E LVGVIEELMN VC  QKNGFSSDFIAIEI SPDCPDLTLIDLPGIVRTAV+GQSQGVITEVNGLIE+YL SERTIILAIVPANQDVATVDILERAKKV
Sbjct:   27 VNKLDEAIEREVRPWLDLVDSLRAQGIQDELSLPQ--IAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRTKPGDGWHGKTSVEWKRGPQPPAAGHVASPEALVGVIEELMNAVCEGQKNGFSSDFIAIEIKSPDCPDLTLIDLPGIVRTAVSGQSQGVITEVNGLIENYLRSERTIILAIVPANQDVATVDILERAKKV 232
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BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A836CBT5_9STRA (Mgm1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT5_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.760e-82
Identity = 140/210 (66.67%), Postives = 166/210 (79.05%), Query Frame = 1 
Query:    1 VNKLDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGP--QPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            +NKLDEAIER+VRP+LDL+D+LR+ G+Q+E  LPQ  IAVMGDQS GKSSVLEALSG+ FPRGSGLVTRCPVQL+MKR++ GE W   A V W      QP AAG V+S E L  VI +LM   C+   NGFS+D + +E+ +P+CPDLTL+DLPGIVRTAV GQS  VI EV+ LI++YL  ERTIILAIVPANQDVATVDILERA +V
Sbjct:   20 INKLDEAIERDVRPFLDLIDTLRSHGVQEETPLPQ--IAVMGDQSSGKSSVLEALSGISFPRGSGLVTRCPVQLVMKRARAGEAWRASARVAWSNSARAQPPAAGAVASPEALADVIAQLMAAACDATANGFSTDSLVVEVRAPECPDLTLVDLPGIVRTAVAGQSDAVIPEVSALIDAYLRQERTIILAIVPANQDVATVDILERAARV 227
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BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: F0XVH2_AURAN (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVH2_AURAN)

HSP 1 Score: 234 bits (597), Expect = 2.700e-72
Identity = 121/193 (62.69%), Postives = 145/193 (75.13%), Query Frame = 1 
Query:   37 RPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERA 615
            RP +DL+D+LRA G+Q +L LPQ  IAVMGDQS GKSSVLE +SGV FPRGSGLVTRC  QLIMKR+ PG  W   A+V W R PQPA +G V+    L   IE L   +C    NGFS++ I I +S+PD PDLTL+DLPGIVRTAV GQ+  V+ +VNGLI SYL  ERTI+LA++PANQD+AT+DILERA
Sbjct:   10 RPLIDLIDTLRAHGVQRDLPLPQ--IAVMGDQSAGKSSVLEMISGVPFPRGSGLVTRCATQLIMKRTAPGSAWAATASVSWSR-PQPAESGPVADPAALSVAIERLTEALCAVTTNGFSTETIVINLSAPDVPDLTLLDLPGIVRTAVAGQNADVVGDVNGLITSYLEQERTIVLAVMPANQDIATIDILERA 199
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BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A482SUE8_9ARCH (Dynamin-type G domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUE8_9ARCH)

HSP 1 Score: 228 bits (582), Expect = 1.840e-68
Identity = 114/202 (56.44%), Postives = 153/202 (75.74%), Query Frame = 1 
Query:   10 LDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERA 615
            ++E   +EVRP LDL+D LR  G+Q E+SLPQ  I VMGDQS GKSSVL+++SG+ FPRGSGLVTRCP++LIMK+S+PG  W  +A++ W R  QP+ +G VS+ + L   +  L +++    +NGFSSD I + +S P+ PDLTLIDLPGIVRTA +GQ+  VI++VN LI+ Y++   TIILA+VP NQD+AT+DILERA
Sbjct:    9 MEETFTKEVRPLLDLIDRLREMGVQKEISLPQ--IVVMGDQSSGKSSVLQSISGIPFPRGSGLVTRCPLELIMKKSEPGSTWVAEASIRWNR-EQPSESGPVSNIDELGKKVSALTDILSKSGENGFSSDSIVVRLSDPEAPDLTLIDLPGIVRTATSGQNINVISQVNDLIQHYITLPNTIILAVVPCNQDIATIDILERA 207
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BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A7S3Y6A1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6A1_HETAK)

HSP 1 Score: 219 bits (559), Expect = 1.260e-67
Identity = 119/205 (58.05%), Postives = 144/205 (70.24%), Query Frame = 1 
Query:   10 LDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            L E  ER++RPW+DL+D LR+ GI  ++ LPQ  IAVMGDQS GKSSVLEA+SGV FPRG+GL TRCPVQLI+K    G  W GKA+V   R  QP  AG +++   +   I  L   V       FS++ I +EI +P  PDLTLIDLPGIVRTA  GQS  VI +VN LIE +L  ERT+ILA+VPANQD+ATVDILERA +V
Sbjct:   14 LKEIQERDIRPWMDLIDELRSHGIHHDVPLPQ--IAVMGDQSSGKSSVLEAISGVPFPRGAGLTTRCPVQLILKHLPDGAAWSGKASVAG-RNVQPPGAGPLANPHQVADAIVRLTEAVTEGAAAAFSTETITVEIRAPSVPDLTLIDLPGIVRTATAGQSIQVIGQVNALIEHFLRQERTVILAVVPANQDIATVDILERAAEV 215
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A836CJ76_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ76_9STRA)

HSP 1 Score: 222 bits (566), Expect = 4.400e-65
Identity = 121/205 (59.02%), Postives = 143/205 (69.76%), Query Frame = 1 
Query:   10 LDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            L+ A  +EVRPWLDLVD LR  GI  +++LPQ  IAVMGDQS GKSSVLEA+SGV FPRG GLVTRC  QLIMK +  G  W  +A+V   R               L  VI +L N + +   + FSS+ I IE+ +P  PDLTLIDLPGIVRTA +GQS GV+ EVN ++E YL  ERTIILA+VPANQDVATVDILERAK+V
Sbjct:    9 LEHAHAKEVRPWLDLVDELRGHGISQDIALPQ--IAVMGDQSSGKSSVLEAISGVPFPRGGGLVTRCATQLIMKSAPEGAEWAARASVTGPRKNLKGCGPVQGGPGALTRVIADLQNALTSGNASAFSSESIVIEVRAPGLPDLTLIDLPGIVRTATSGQSAGVMAEVNTMVERYLIQERTIILAVVPANQDVATVDILERAKRV 211
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A6V1N3L6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3L6_HETAK)

HSP 1 Score: 220 bits (560), Expect = 5.690e-64
Identity = 118/205 (57.56%), Postives = 145/205 (70.73%), Query Frame = 1 
Query:   10 LDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            L E  ER++RPW+DL+D LR+ GI  ++ LPQ  IAVMGDQS GKSSVLEA+SGV FPRG+GL TRCPVQLI+K    G  W GKA+V   R  QP  AG +++   +   I  L   V       FS++ I +EI +P  PDLTLIDLPGIVRTA  GQS  VI +VN LIE +L  ERT+ILA+VPANQD+AT+DILERA++V
Sbjct:   14 LKEIQERDIRPWMDLIDELRSHGIHHDVPLPQ--IAVMGDQSSGKSSVLEAISGVPFPRGAGLTTRCPVQLILKHLPDGAAWSGKASVAG-RNVQPPGAGPLANPHQVADAIVRLTEAVTEGAAAAFSTETITVEIRAPSVPDLTLIDLPGIVRTATAGQSIQVIGQVNALIEHFLRQERTVILAVVPANQDIATIDILERAQQV 215
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A6V2RT65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RT65_HETAK)

HSP 1 Score: 217 bits (552), Expect = 7.760e-63
Identity = 113/201 (56.22%), Postives = 150/201 (74.63%), Query Frame = 1 
Query:   22 IEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            ++++V+PWLDL++ LR+  +  ELS+PQ  IAVMGDQS GKSSVLEALS V FPRGSGL TRCPV+L+M+ +  G+ W   A V   +  QP  A  VSS E L  +IE   N + N Q + FS++ I +EI++PD P+LTLIDLPGI+RTA  GQS  V+ ++N LI+SYL  ERT+ILA++PANQD+AT+DILERA++V
Sbjct:   18 LDKDVKPWLDLMEDLRSLSMDKELSIPQ--IAVMGDQSSGKSSVLEALSNVPFPRGSGLTTRCPVRLVMRTALKGQSW--AARVSTTKSTQPPVA--VSSPEELTPLIERFTNTLTNGQSSEFSAESIVVEIAAPDAPNLTLIDLPGIIRTATAGQSAQVMGQINALIDSYLRQERTLILAVIPANQDIATIDILERAQQV 212
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: D7FR39_ECTSI (Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR39_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 8.590e-63
Identity = 125/226 (55.31%), Postives = 149/226 (65.93%), Query Frame = 1 
Query:   25 EREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPW-------------HG-------------KANVDWKRGPQPAAAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            +R+VRPWLDLVD LRA GI  +L LPQ  IAVMGDQSCGKSSVLEA+SG+ FPRGSGLVTRC  QLIMK S  G PW             HG             K + D+ +GP+ A     S+ E L  VIE+L + +    +  FS+  I++++ +P  PDLTLIDLPGIVRTA  GQ   V+ EVNGLI+ +L  ERTIILA+VPANQDVA VDILERAK V
Sbjct:   21 DRDVRPWLDLVDELRAHGISQDLPLPQ--IAVMGDQSCGKSSVLEAISGIPFPRGSGLVTRCATQLIMKSSPKGSPWKASASIPEQQQQQHGASSLWRKTKSSTSKTSADFPKGPRSA-----STPEELTKVIEDLQDALTAGDQGAFSTATISVQVQAPGLPDLTLIDLPGIVRTATKGQRTSVMAEVNGLIQRFLEQERTIILAVVPANQDVAPVDILERAKMV 239
[Close]
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Match: A0A7S2W2A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A1_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.400e-62
Identity = 113/198 (57.07%), Postives = 145/198 (73.23%), Query Frame = 1 
Query:   34 VRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSSVLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPAAAGE-VSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLIDLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVDILERAKKV 624
            VRPWLDLVD+LRAQG+ ++L++PQ  IAVMGDQS GKSSVLEALSGV FPRG+GL TRCP+ L+MK S PG  W   A+V  + G   +     V   E L  ++ +L + +      GFS D I++ ++SPD PDLTLIDLPGIVRTA +GQ   V+ +VNG I S+L  ERTIILA++PANQD+AT++ILERA++V
Sbjct:   18 VRPWLDLVDNLRAQGVHEDLAIPQ--IAVMGDQSSGKSSVLEALSGVAFPRGTGLTTRCPIHLLMKTSPPGTAWQATASVVRQSGAMSSLQPRTVHKPELLTELLVQLTDKLTTGDAQGFSQDAISLTVTSPDVPDLTLIDLPGIVRTATSGQDGAVLRQVNGTINSFLEQERTIILAVLPANQDLATIEILERAQRV 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13940.2412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA2_ECTSI2.090e-11790.38Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectoc... [more]
A0A836CBT5_9STRA1.760e-8266.67Mgm1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
F0XVH2_AURAN2.700e-7262.69Dynamin-type G domain-containing protein (Fragment... [more]
A0A482SUE8_9ARCH1.840e-6856.44Dynamin-type G domain-containing protein n=1 Tax=a... [more]
A0A7S3Y6A1_HETAK1.260e-6758.05Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CJ76_9STRA4.400e-6559.02P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V1N3L6_HETAK5.690e-6457.56Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V2RT65_HETAK7.760e-6356.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FR39_ECTSI8.590e-6355.31Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectoca... [more]
A0A7S2W2A1_9STRA1.400e-6257.07Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13940contigH-paniculata_contig13940:303..4822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue2.1e-98
Seed eggNOG ortholog2880.D8LJA2
KEGG rclassRC00017
KEGG koko:K05288,ko:K20291
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031461,GO:0031625,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0051171,GO:0051246,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG0699@1,COG5021@1,KOG0446@2759,KOG4276@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size624
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13940.2412.1prot_H-paniculata_contig13940.2412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13940 303..4822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.647926-CDS-H-paniculata_contig13940:302..4131622929107.647926-CDS-H-paniculata_contig13940:302..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 303..413 +
1691480734.3798137-CDS-H-paniculata_contig13940:302..4131691480734.3798137-CDS-H-paniculata_contig13940:302..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 303..413 +
1622929107.6595798-CDS-H-paniculata_contig13940:1224..13721622929107.6595798-CDS-H-paniculata_contig13940:1224..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 1225..1372 +
1691480734.3908064-CDS-H-paniculata_contig13940:1224..13721691480734.3908064-CDS-H-paniculata_contig13940:1224..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 1225..1372 +
1622929107.674724-CDS-H-paniculata_contig13940:1882..19861622929107.674724-CDS-H-paniculata_contig13940:1882..1986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 1883..1986 +
1691480734.3990564-CDS-H-paniculata_contig13940:1882..19861691480734.3990564-CDS-H-paniculata_contig13940:1882..1986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 1883..1986 +
1622929107.6892362-CDS-H-paniculata_contig13940:3646..37931622929107.6892362-CDS-H-paniculata_contig13940:3646..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 3647..3793 +
1691480734.4132023-CDS-H-paniculata_contig13940:3646..37931691480734.4132023-CDS-H-paniculata_contig13940:3646..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 3647..3793 +
1622929107.7110634-CDS-H-paniculata_contig13940:4708..48221622929107.7110634-CDS-H-paniculata_contig13940:4708..4822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 4709..4822 +
1691480734.4221203-CDS-H-paniculata_contig13940:4708..48221691480734.4221203-CDS-H-paniculata_contig13940:4708..4822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13940 4709..4822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13940.2412.1

>prot_H-paniculata_contig13940.2412.1 ID=prot_H-paniculata_contig13940.2412.1|Name=mRNA_H-paniculata_contig13940.2412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
VNKLDEAIEREVRPWLDLVDSLRAQGIQDELSLPQARIAVMGDQSCGKSS
VLEALSGVQFPRGSGLVTRCPVQLIMKRSKPGEPWHGKANVDWKRGPQPA
AAGEVSSAETLVGVIEELMNVVCNDQKNGFSSDFIAIEISSPDCPDLTLI
DLPGIVRTAVTGQSQGVITEVNGLIESYLSSERTIILAIVPANQDVATVD
ILERAKKV
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mRNA from alignment at H-paniculata_contig13940:303..4822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13940.2412.1 ID=mRNA_H-paniculata_contig13940.2412.1|Name=mRNA_H-paniculata_contig13940.2412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4520bp|location=Sequence derived from alignment at H-paniculata_contig13940:303..4822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAACAAGCTGGATGAGGCCATTGAACGAGAAGTTCGGCCTTGGTTGGA
CCTCGTCGACTCTCTCCGTGCTCAAGGCATCCAGGATGAGCTCAGCTTAC
CACAGGCACGTGTACTGTATCCTGTTGTTGTATTCTGCTGTATAACGCCG
CGGCACGCATGATATCATGTACCACCAATTTACTGTACACTGTACTATTG
ATCGTAGTAGTATAGCGGTGTGGATATCCCCGCTCAGTGACGGTTATTTT
TCTGTTCAGGCCTTCCTTTTCCATCCCAGGTGTTGATCAAAACAAATCAA
TATGGCCTACGCAGCACGCAAAGGCTCGCTGCGCTCACGTACAGAATACG
AATGTCCGCGAAAAATCATTTTCAAAAGTTACTTGACTTGAGTAGTGAGA
AATTGTTCCGGAATAATCACTACTACCGCCACATCGGTGCGTATAATATG
AAATCATGGGTCGTATATCTCCACCCGAGTTGATAAGATTTTTTTATATT
GCACTTCCTGGTATTATTTCTCAATTTCGATTTTTTCGACGTTTTGCGAC
AGTGCTCATGACACGTATAGCGCTACTGTTGGAAAGATATTATCGTCCAA
GAATTTTGAGCCTCGATTTTTTTTTTTTTTTTCAAAAGTTCAGCCTCCCT
AGAAATCGTAATCAACTGGTAGTCCTATATTACGTTTTAGTACGTATCAG
GGACTCATGTTTCCTCGTATCTCCAGGTTTCTTGATATGAAATTTTCTCG
TGGATTGTCGTTATTTTTTTGGTGCTAATGAAGTACAACCTCTGCTGATT
GAGTGGAGTCTGGGCGTTTGTATCTCTCGTGCCAATCATTTTCGGGGTTT
TAACGATGTTCGATGTAACGGTTCACGGTTCCCCTTCATCGCCCCGATCC
ATTTCAATCCAATCCAAACCAGATTGCGGTAATGGGAGACCAATCCTGCG
GAAAGAGCTCTGTGCTCGAGGCTCTCTCGGGCGTGCAGTTTCCTCGTGGA
TCAGGGCTGGTGACTCGGTGTCCCGTTCAGCTTATCATGAAACGCTCCAA
GCCAGGGGAACCGTGGCACGGTGGGCTATCTAGTATCTGTTATCTCGTAT
GTTTGTATCTTTTATCTTATGACGAATATTGGTCTTGCTACCTATTTGAT
GTGAAAGAAAAATCATAATAATAGTAGTAATCACCACGAATCGTATTCCA
ATTGTCTCCCGTTCGATGCCTGTTCGCGTGGCTTGGACAATTTTAGGCTT
GAAATGTCACTTTACTACAGTAATGAGAATTTTCAGTCAGTGATAGGATT
TTTTTTTTTTTTTTTCATAGTATTAGTCATTATCATATATTGATAATTTC
ATGTTTTACCTGTAGTACACATGCGACTGATGCTGTGATACGCCCTTGTG
AAAATTATGGTAGCTCATGTCGTGCGTGGTTGAAGAGGCGCGATATTCCT
CTCCCCTCCTCCTCCCGCAAGTCACCGGTCCATGGATGTCAATGTAACAG
GTACTGACCGGCAGCGACCTGAACTGCATATTTAACCCATCTCTTGTCGA
TTGGTGTATGACACAACGTATGGCTCGTAGGCAAGGCGAATGTGGATTGG
AAGCGCGGTCCTCAGCCCGCCGCAGCTGGAGAGGTGTCTTCGGCGGAGAC
TTTGGTCGGGGTCATCGAGGAGCTCATGAACGTGGTGAGTTGGGTTGTAC
TGTACTGTACTGTACTGTACTGTATTTTACGCTTGTTTTTTTTCGAAGTC
AGCCCTGCATCGCATATATCTCGTTAATTTAATGAATTTTTTTATTGTTA
TTAAACACTCAAGCGATCACACTGATCCCCAGTCAGACAAACGACAGCAG
TTCCCCGAGGCAACACGTGTACATGTAGTTATTATTGATCTGAAGTATAC
GATCAGCTGATTTATGTACGTTATGGCAGCGAAACTCTACGATTCCCTGC
TTCCATTAGTCTTGTGTAAAACACAGAACTGATGTGTGCCTCCAATACTA
GATACTGTACGATGGTGGAGCCCCTCCGTATGCCTGCAACAATGCTGCAG
TACCGACGAAAGACACGAATCTGTACTGATGGCAAACTGTTCCCCTGATG
CATTACGTTACGCAACTAATAATGGAACTGCTATTACGGAGGCTTATTGT
TATTGGGAATAACTTGTGCTTTTTTTCAAACTGAAGGCAAGAAAACAAGG
TTTTAATCTAATGTATATATATATATATATATATATATATATTGCTCTTT
TCGTGCGACGAATTTCAAAGAAAGCCATGTGCAGATAAAACAAGGAGGGC
ACACGAGAGGATTATGGTGCACTTCGTAGTGTCACAAGAGAGGTGATGAT
TGCACCTTTCAGATGGTGCCGGTCCCATGGTGAGCAACGAAACACAACGC
TCAGGAGCTGGGGACAAGCATGGGCACTTCAAAACACACGTATTTTGTTT
TGTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATGCTT
CCATACTTGAGTATTTTCCCAAAGTATAACACACGTTGTTTTTACGGGAA
ATGAAAGTTAGAACCCATTTTTGCGAATCAGCTTGCAGAATCCGTTCCAA
AAAAAACTGAGAATCCAACGGCTGGGATCTATTAATCAGATTTTTTAATT
TCGGTTTAGTTCTTGAGGAAAGTGGGCGAAATATGGTGAAATTGCTGAAT
ATGTCTTACCAGCGCTGGGCTTGGGTTAACGGCGACAAACTCGGAAAATA
TGGCGTAAGTCGGTGTAAACATTTTTTTTTAACGATTTGTCTTTTTGTAC
GTGACCGCGTTGACCATAGGATAATTGAAGCCATCGCTTATGGGAAATAT
CGAGGAAATTTTGTACATTTTTGCTCACCAGCCCTCGGGTAGGGTTAGCG
GCGAATATTGTGGAAAATGTATCATAACAGAAGTTACATATTTAAAAGCT
TTTTTGTATTTTTTTTCGTGACCCAAGTGTCTGTGGGGTTCGTTTACGCC
ATCAGTTGTTACATCATTGGCGAAATTTTTGTCGAGGTGCCAATAACGAT
GTGCCACCGTAAGAAACATCTTCGCCAGATTGCCTGTGGAAGATAGCGGT
GATTATACAGGGTGATGTAGCGATCGGATCCCGTTCGCTGCAAGTACAGA
TCCTTGCTTTGTTGTTGTCATGAAGGCAGAGCGACACAGACACAAAGACG
GAGCGATCGTTAACACAAGTGCGGAGTATCGTGTGAGTGATACGATTTCG
TTTCTTTGTTCTTTTTTCTTCTTTTTTTTGGCGGGGGGGGTGGGGGGGGG
GGACACACGACATGGCACCTACGTACCTACCTGCCGAACCCCAGGTATGC
AACGATCAGAAGAACGGGTTCAGCAGCGACTTCATCGCCATCGAGATATC
GTCCCCCGACTGCCCAGATTTGACCCTCATCGACCTTCCGGGCATCGTGC
GCACGGCGGTGACGGGACAGAGTCAGGGGGTCATCACCGAGGTGACAAGC
CCAGAGGAACATTTTATTATTCCTGGAGGGAATAGGGGGGAAGGGAGCGT
ACTCATGTGTTGCACGTTGAAGTTGTTCAACAGTTGACTACGCGTCCTCG
GAAGGACGGACGCTTGATTCATCAGAGTGATGATTCTCGATGGCCAAATG
CTCTTTCCTAGGTTGCCAAATGTGACTCTAAAGTGTTTCACCTGCCACTA
TTTACCTCAACGCTCGCCTATACAGCGGGGCGAAGGGGGGGGGGGGTGCT
TATGTTTTGCATGTTGCAGTTGGTAGACCACTGACGACGCTTTCTCTGCA
GGACGGAGCTTTGTTCCCGTCAGCTTGATTTCCAATGGGAAACGAACTGC
TAGAGAGATAATGTCGAAAAGGTGGATGACGAGGTATTTACCACGTGGGA
ATAGCGGAAATACGCAGTCGACAATGTGAGAATGTTTGAGGGTACCCTTT
AGCGTTGGAGTGTATTAACAAAAAAAAACCAGCGCAGGTTCTTGTTGCCT
CCCAAGAGATCGCATTAGAAACAAGTATTACACGTGGGGTGTTATTACTC
CGGTCAGGTATCTACCGTTTCACGGAGTCTGTAGTCACACCTATATCTTT
TTTTTTTCGTTTTTTTTTTTTTTTCTATTATGTTCTCTTTTTTTTGCGCA
GGTGTGTTACCAGAAAAACCTAAGTATATACCTTATAAGGCCGAGATAAT
ACTCTCCTACGTACTTGTGCTCTAGTTCGTAGGCAGAATAATTTGGAACT
GGGTTAAGGTGGGTTGCAATAATCCCCGTGATTGTCGGTATCCACCCCTT
TGCCAGATTAGGATCGTTTGTCCCTGAACAGCGTTTTTTCTTCTCCAAAC
ACATTAAACTTGATCCAATCGCTCAGACCCGCATCATGTACGCACTTCAC
TGACAGGTGAACGGGCTGATCGAGAGCTATCTTAGCTCCGAACGCACGAT
CATTCTAGCCATCGTACCTGCTAACCAAGACGTGGCAACCGTGGATATCC
TAGAGAGGGCGAAAAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig13940:303..4822+

>mRNA_H-paniculata_contig13940.2412.1 ID=mRNA_H-paniculata_contig13940.2412.1|Name=mRNA_H-paniculata_contig13940.2412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig13940:303..4822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAACAAGCTGGATGAGGCCATTGAACGAGAAGTTCGGCCTTGGTTGGA
CCTCGTCGACTCTCTCCGTGCTCAAGGCATCCAGGATGAGCTCAGCTTAC
CACAGGCACGTGTAAACAAGCTGGATGAGGCCATTGAACGAGAAGTTCGG
CCTTGGTTGGACCTCGTCGACTCTCTCCGTGCTCAAGGCATCCAGGATGA
GCTCAGCTTACCACAGGCACGTATTGCGGTAATGGGAGACCAATCCTGCG
GAAAGAGCTCTGTGCTCGAGGCTCTCTCGGGCGTGCAGTTTCCTCGTGGA
TCAGGGCTGGTGACTCGGTGTCCCGTTCAGCTTATCATGAAACGCTCCAA
GCCAGGGGAACCGTGGCACGATTGCGGTAATGGGAGACCAATCCTGCGGA
AAGAGCTCTGTGCTCGAGGCTCTCTCGGGCGTGCAGTTTCCTCGTGGATC
AGGGCTGGTGACTCGGTGTCCCGTTCAGCTTATCATGAAACGCTCCAAGC
CAGGGGAACCGTGGCACGGCAAGGCGAATGTGGATTGGAAGCGCGGTCCT
CAGCCCGCCGCAGCTGGAGAGGTGTCTTCGGCGGAGACTTTGGTCGGGGT
CATCGAGGAGCTCATGAACGTGGCAAGGCGAATGTGGATTGGAAGCGCGG
TCCTCAGCCCGCCGCAGCTGGAGAGGTGTCTTCGGCGGAGACTTTGGTCG
GGGTCATCGAGGAGCTCATGAACGTGGTATGCAACGATCAGAAGAACGGG
TTCAGCAGCGACTTCATCGCCATCGAGATATCGTCCCCCGACTGCCCAGA
TTTGACCCTCATCGACCTTCCGGGCATCGTGCGCACGGCGGTGACGGGAC
AGAGTCAGGGGGTCATCACCGAGGTATGCAACGATCAGAAGAACGGGTTC
AGCAGCGACTTCATCGCCATCGAGATATCGTCCCCCGACTGCCCAGATTT
GACCCTCATCGACCTTCCGGGCATCGTGCGCACGGCGGTGACGGGACAGA
GTCAGGGGGTCATCACCGAGGTGAACGGGCTGATCGAGAGCTATCTTAGC
TCCGAACGCACGATCATTCTAGCCATCGTACCTGCTAACCAAGACGTGGC
AACCGTGGATATCCTAGAGAGGGCGAAAAAGGTGGTGAACGGGCTGATCG
AGAGCTATCTTAGCTCCGAACGCACGATCATTCTAGCCATCGTACCTGCT
AACCAAGACGTGGCAACCGTGGATATCCTAGAGAGGGCGAAAAAGGTG
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