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Homology
BLAST of mRNA_H-paniculata_contig1393.2406.1 vs. uniprot
Match: D7FPF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF4_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 4.810e-10 Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 1
Query: 1063 RTGATEKRSQGAQCTSPPVDKSIQTTGLRLPRKSAYSRDRILHPRPAVNTVPIAFAQTEVHRNSHPRYSQAKTATAAADAIGETGAEMGEPTYPGSEIEDINGTTVEKGMRGSKDEKVRSGEAAGR---VHVRLGGEILGHAKFGQLPTVWAVS 1515
+TG TE RS+G QC+ PPVD+ +QT+ LRLPRKS S R +HPRP T + E N + GE TY ++ G E R G A R +HVR+G E + A GQ +W+V+
Sbjct: 44 KTGNTETRSEGVQCSGPPVDQGVQTSALRLPRKSGASTHRTIHPRPLSPTKSSVMSSPEAQVNQY-----------------------GEETYREKASRGLSTPA------GGAHEPARVGIALEREAHIHVRVGLEGVRDADRGQQRAIWSVA 168
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Model size | 2254 |
| Cds size | 1152 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1393.2406.1 >prot_H-paniculata_contig1393.2406.1 ID=prot_H-paniculata_contig1393.2406.1|Name=mRNA_H-paniculata_contig1393.2406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=384bp
MSCTQLVWLVRAVEGPSVLRRPCIRQANRTSAGDGHHLILLRAGCIQPAV
QRLYQTEEVGLRRAVTLTENAVGSDLDSGVSEWGSDDDGETAAFEMLLAE
QTRMSRQLWTSPPSTPTSSATDSPPHRSHRSRRSVRLRRRQSGVEGAQST
TLQEDKSSCKTTADERSAVAPLSVNDNENNPENTTLYPQPPLVAREAGPQ
VPLDVRYCSPYRTGATEKRSQGAQCTSPPVDKSIQTTGLRLPRKSAYSRD
RILHPRPAVNTVPIAFAQTEVHRNSHPRYSQAKTATAAADAIGETGAEMG
EPTYPGSEIEDINGTTVEKGMRGSKDEKVRSGEAAGRVHVRLGGEILGHA
KFGQLPTVWAVSRRKPEDRCGWKKTFGSWGDVM* back to topmRNA from alignment at H-paniculata_contig1393:1337..6707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1393.2406.1 ID=mRNA_H-paniculata_contig1393.2406.1|Name=mRNA_H-paniculata_contig1393.2406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5371bp|location=Sequence derived from alignment at H-paniculata_contig1393:1337..6707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCCTCCCGATCTTGTAAAAAGTGTCGGGCACTAGGCTTGTGGATGGT
TGGCTATTATACGGTGTAAAGATGTACACACAATTACCGGAACCAAGAGG
AACTCCCGTCGAAGGTATGAATCTTAGTTATAGTCAGTTCATGCCCCGTA
GGCCTTCCATTGATGATACATCATCAGGTTACTGGCAGTGTATCAATGTC
GCCAGCTACCTTGAGGAAAATAAGGACCACCGCGTATGTCACAAACAATC
GCATCTTAAGGGCCCTTCTAAACGAGGCCAATTTTGGTCCGATTTTTCCG
ATTTTTCCGGTTTCCGAGGATTGCAAATCCCGATAGCGAGCTTAAAAACT
TGACGTTGGTGAAATGGAAGACGACCTTTTGTTGGACAATGAGCTCCATA
TTTTTTGTCCATGCCATCAATTTTTCCGCCTGGTGTGGTTTCCGACCCTC
AGGGCCGACTTGGTCGGTTGATAGCCCAATCAAAAGCTCTCAGTCATCCG
TTGATGTGAATACCTCAATTGACTGAGTCCGATCCATGGTTCGAATTTAT
GGTAGTGACAAGAATGGGCGGGAAACCGTTTAATCCTTTCGGCGTGGATT
ATTTTAATCGGTGCTCTTGCTTGCAGCAGCTCAAGCAGGCCTTTCAATCT
GCTGTATCTCGCCACCGAGACTACCGGTGACCGTACAGCAAGTATCTGCG
TGCTGCTATGAGCTAGGCCGTTTGTTTGAGCCGCTGCACGCAGTCTAACT
CGTTGAAATGAGTGCGCTGCAACGTGTCGCGTGAAAAAAGTATGGATTTC
AGGCTTGTTCTCCAAAAGACAGTCCGTTCTTTATTTCACCAATATCATGT
TTAGAGTGTTTCCGCACCTTTCCCTCGATTTCGAGCTCACAATGTTGATT
TCCAATGTTTTAGAAATGGAAAAATCGGGAGAATCGGACAAAAAAACGGC
CTCGATTACTTTGGCCTCACAGACCCGGCTCGCTAAGAAGAAATGTTGAT
CTTGATCCAGGTTTAGTGTCTTGATTTTTAACTGCTTCTTATTTGGCGAA
GGTTCTGACAAGCTGTATTTTCCCATTTCTTATGTCTTATTGGCGAACAG
TGCTGACAGGGTGTCTTTTGCACTATCGTCAGGTTCTTGTTGAGGGGTGC
ATGGTAGCGCCATGAAACGAATACTCACATTACTCGCGGTCAACGGTGAT
GATGGGGGTATTTGTATCAGCAGATGCCCCCATGGCCATAGCTTCAAGGT
GCTTTGCGGGTGCGTATGCTTCGCACATACAACATGCTTGTTTCTTATTT
AGTTGATTCTTATCTTGTGACAGATTTCGAGATCCATGTCTTGAGGCAAT
TTCTTATTCTGTCTAAAACCTCAGGCTCAGTTGCTCATGACTCTGTTTCG
TAATAGCCGACCGGATCTGTAACCCCACTGTGTGCTGCCCACTTTCTCGC
ATATACAGGGTCTGACGGCCACACAGACCATCAAGTCTTCCTCGATTTGG
TTCATAATGACCCAACAACGAGAGCGCCACAAAAAGCATGGCAGCAAGAC
ATCCCAACACCACCGGTTAGCATTCCATCAGACAGGAATAGTGGGAACTG
CAACAACCACTTCATTACCTCGGAGGAGCTCTTGCTGCTGCCATCAAATC
GCAAAATAAGGCAAGAGACTATCACATATATCTGCATATCTACCACCTCA
TTGACCTGTCGGCATATTTCTGAGTAAACACCCCTCTCCCCTCTCCCCAA
CAGTACCTCGCTGCTTCTGTATGTATTCCTTTTTGTTAGCAGGAGTGCCG
CATTTGGCAGATCACGGCGGTACAACCTTTTCTCCGCTCTGACACGGCGC
CAGCGTGTAATATCAGACCGGGAGCAGCGCAGACGCCGTCAGGTGGAAAA
CCAAAATGTCGTGCACCCAGTTGGTCTGGCTTGTTCGTGCGGTTGAAGGA
CCTAGTGTACTACGTAGACCAAATTATACCGATGGTTGTCGGTTGGTGAA
AGAATGCAGTTCGATTCAGTGAACGCTTGTGCCATCACCAACGTACCGCC
ATTCGTGCGGAGGTCCCCATTTCCCTGTGCGGTGAAGGTCTAAACTATAG
AGCTTACTCGAGTAGTCTGTTATACCTGGTAGCAATTTGATTTATTGTTG
TTCTCGTGAGAACATTGCCCCTCGCTTCGCGTGTCGTCTCTCTGAGAAGG
CTTCTGAGAGAAATAGCGTCGAAGTGCTAGGAGGTTTACTGCACCGTTCT
GCGCGAAGCAGTTGTATTCGTCAAGCAAATAGAACATCGGCTGGCGACGG
CCACCACCTTATCCTCCTGCGGGCCGGTTGCATACAGCCTGCCGTGCAGC
GTTTATACCAGACGGAAGAGGTGGGCCTCCGGCGAGCGGTGACACTGACA
GAGAATGCTGTTGGGAGCGATCTGGACTCAGGTGCAACAATACGTGGGTT
CATTGCTCAGCTGTTAAAACCAGAGCCTAACGGATTGATATCTACCGTAG
ATCCCTTTTTATATCGCCAAATAGTTTTTTGTTTTTTTTTCTGACCCGGA
AACCGTCGCTGCCCTCGTCATTTCAACATCGCAGGGGTCGTACACCGCTA
TATTGCAACGGATACGTTTCATTCACCTGCCTCTAGGTGGTGCAGGTTAC
TAATACACAATCCTTGCACTACGCTGTCTGATTATATCACCAGGGGTCTC
TGAGTGGGGTTCCGATGACGATGGTGAAACCGCTGCCTTTGAGATGCTCT
TGGCGGAGCAGACGCGGATGAGCCGCCAGCTTTGGACCTCCCCCCCGTCT
ACGCCAACTAGCAGTGCAACCGACAGTCCACCTCATCGGTCTCATCGATC
TCGCCGGTCGGTGCGATTGAGAAGGTAGGCGCCAGCGGTTGAGCGTTCTA
GCAAACACAGCACGGAGAAGGAGTTTGTTTACTGCAAAAAGTATGCCAAA
AATAGCTCGAATGAGTGCGATCGGCATGAAACATTGCCGCCGTTCCTAGT
AAAACGAGCAGAAGAACGTAGATACTGCGCGGATTGTACTTGCGTGTTTG
CCAATCCCAACGTCGGTACGTGGCAATATGGTCGACGGAAGGTACCGATG
GGTATGAGTATGAAGTACAACGCCTGATCTATGTCATTTCAGCTTGCCCA
ATCACTGCTTCGTGGCACGTCTTTGATGCTTGATTATTTTCAAATGTGTG
CCTCAGACGACAATCTGGCGTTGAGGGCGCTCAATCTACAACACTTCAGG
AAGACAAGTCTTCGTGTAAAACGACCGCAGACGAACGCTCTGCGGTGGCC
CCTCTTTCCGTTAATGACAACGAAAACAACCCAGAGAATACAACGCTGTA
TCCGCAACCGCCGCTTGTAGCGAGGGAAGCGGGCCCGCAAGTTCCGCTCG
ACGTCAGGTATTGCTCACCGTAGAGAAGGTACCAATCACACGCGTATGTA
ACCCTCTTGTGCGTTTCCCGTCGGGACCGACATGTGTTCCTTGACTTGCC
GATCTGTAAGCGCGCTGGTTGGCTGCTCTTGAACAGTTGGGTGTCGTTAC
ATCCATTGCTGCTACCAGCATCAAATTGATGAGTGCTGGACGCAGTGGCA
ACGAGCGTGTGTGATGTTTACGTTATGCATTTACTTTCACCTACATCCAC
GCGAAAACATTGAGAGCTTGATGGTGTTGCCAGATTATAATACGTACATA
TTGACCGGCTGAGCAGCTACAGAATCCTCAATTTGCGATACTCTTACCAA
TATATTGTACGGCAACCGATCCTCCAGTTGTCGCGCTCGCCCCTCCCTTG
TGTTTCTCACGTTGTTCTCGTTCGAATCTTGTCTCGCTGCCGTAGGACCG
GTGCAACAGAAAAGCGGAGCCAAGGTGCTCAGTGCACTTCGCCACCGGTC
GACAAAAGCATCCAGGTCGGATATCGACACTGGTTAAATCTGTGTCGTGT
GTACATGTATGGTAGTTTTTGGTTTTGTTGTAGATCGACTGATTGAGCTC
TACCGCGAGCACCCACGTTGCGTCTAATGTTGTCACCAGATGTTGCTAAC
TTCAAACGGCTTTTTGAAGTGGTGGCCCGGGATATTACGTCGTCGAAACA
TAGTCACCTTGGTTCTTGCACAGCCCGTCTTCGACCGCCGATATTAACAC
TGCAACTGCTTGTCGGCCGTTGAGGTGCCAAGCCCCGTTCTCCCACTACC
TGTGACGGTACGCTATGTTCATTTTGTACATCCTCCATTGCCATCATCCA
GACGACGGGTCTTCGACTGCCACGAAAGAGTGCCTACTCAAGAGACCGCA
TTCTTCATCCGCGTCCAGCTGTTAATACGGTTCCCATAGCTTTCGCGCAA
ACGGAAGTTCACCGCAATTCTCACCCTCGCTATTCCCAAGCAAAGACAGC
GACAGCCGCTGCGGACGCCATTGGGGAGACGGGGGCAGAGATGGGGGAAC
CAACTTATCCAGGTAGCGAGATTGAGGATATAAATGGGACAACGGTCGAG
AAAGGAATGAGAGGCTCAAAGGACGAGAAGGTTCGAAGCGGGGAGGCAGC
TGGGCGAGTGCACGTTCGACTGGGGGGCGAGATTCTTGGGCACGCAAAGT
TCGGGCAACTTCCGACTGTGTGGGCTGTGTCTAGAAGAAAACCAGAAGAC
CGCTGTGGGTGGAAAAAAACGTTTGGGAGCTGGGGCGACGTTATGTAGAT
GATATATCAACCCACGGTTGTCTTTACTCACGCAGTCCTTGAGACAGGGT
GCACAAAAAGCCCCTTCCGAAGCTAATAAAGTAGATGAAAATGTGCTCTT
GAATTGACTCTGTATTTTCTCTACCCCAAATTCCCCTTGGTATCATTACA
TCGGTTGCATCTCCAGTAGAGCTATATGCTTCCCCCCGGTCAACTTGAGC
GATTGGTGTCATGCTTGCCTTAGGCGCGGACCCTGTCATTATGGTCCAGC
TAGAGCCTGGAGAAGAACGCCAAGAAACGTCTCCTGAAGTCCAGAGAAAC
GTATGCCTGAAGAGATTCTTGCATGTGACAGACTTTGCGGGTCCCCAAAG
TCTTGCTGCTACCAATGGGGATTCTAAGATGGGGCAAGAGGGTGCGACGG
AGGTGAAAGAAGGAGACAAGACAACAGACCCCGTTATGGTAAGGGGGCAT
GGAAATAGTGCTATGAGTCAACACAACCAAGGCATGGACAACAGATTGAG
CTACCACGTTTGTTGATGGAAATCAGTATGCTACGGCGTCGCTCAGTTGA
GCAATGAGGTTGAGAACGGGCGTTCGATACAAAACTTACCTGTGTGAAGT
TACAAGAAAAACACGCCTATTTCTCTCCCTTGGTGTGTTTTGGAGACAGA
TAAATGGCACGCTTGCCGTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1393:1337..6707+ >mRNA_H-paniculata_contig1393.2406.1 ID=mRNA_H-paniculata_contig1393.2406.1|Name=mRNA_H-paniculata_contig1393.2406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2304bp|location=Sequence derived from alignment at H-paniculata_contig1393:1337..6707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTGCACCCAGTTGGTCTGGCTTGTTCGTGCGGTTGAAGGACCTAG
TGTACTACGTAGACCATGTCGTGCACCCAGTTGGTCTGGCTTGTTCGTGC
GGTTGAAGGACCTAGTGTACTACGTAGACCTTGTATTCGTCAAGCAAATA
GAACATCGGCTGGCGACGGCCACCACCTTATCCTCCTGCGGGCCGGTTGC
ATACAGCCTGCCGTGCAGCGTTTATACCAGACGGAAGAGGTGGGCCTCCG
GCGAGCGGTGACACTGACAGAGAATGCTGTTGGGAGCGATCTGGACTCAG
TTGTATTCGTCAAGCAAATAGAACATCGGCTGGCGACGGCCACCACCTTA
TCCTCCTGCGGGCCGGTTGCATACAGCCTGCCGTGCAGCGTTTATACCAG
ACGGAAGAGGTGGGCCTCCGGCGAGCGGTGACACTGACAGAGAATGCTGT
TGGGAGCGATCTGGACTCAGGGGTCTCTGAGTGGGGTTCCGATGACGATG
GTGAAACCGCTGCCTTTGAGATGCTCTTGGCGGAGCAGACGCGGATGAGC
CGCCAGCTTTGGACCTCCCCCCCGTCTACGCCAACTAGCAGTGCAACCGA
CAGTCCACCTCATCGGTCTCATCGATCTCGCCGGTCGGTGCGATTGAGAA
GGGGTCTCTGAGTGGGGTTCCGATGACGATGGTGAAACCGCTGCCTTTGA
GATGCTCTTGGCGGAGCAGACGCGGATGAGCCGCCAGCTTTGGACCTCCC
CCCCGTCTACGCCAACTAGCAGTGCAACCGACAGTCCACCTCATCGGTCT
CATCGATCTCGCCGGTCGGTGCGATTGAGAAGACGACAATCTGGCGTTGA
GGGCGCTCAATCTACAACACTTCAGGAAGACAAGTCTTCGTGTAAAACGA
CCGCAGACGAACGCTCTGCGGTGGCCCCTCTTTCCGTTAATGACAACGAA
AACAACCCAGAGAATACAACGCTGTATCCGCAACCGCCGCTTGTAGCGAG
GGAAGCGGGCCCGCAAGTTCCGCTCGACGTCAGGTATTGCTCACCGTAAC
GACAATCTGGCGTTGAGGGCGCTCAATCTACAACACTTCAGGAAGACAAG
TCTTCGTGTAAAACGACCGCAGACGAACGCTCTGCGGTGGCCCCTCTTTC
CGTTAATGACAACGAAAACAACCCAGAGAATACAACGCTGTATCCGCAAC
CGCCGCTTGTAGCGAGGGAAGCGGGCCCGCAAGTTCCGCTCGACGTCAGG
TATTGCTCACCGTATAGGACCGGTGCAACAGAAAAGCGGAGCCAAGGTGC
TCAGTGCACTTCGCCACCGGTCGACAAAAGCATCCAGTAGGACCGGTGCA
ACAGAAAAGCGGAGCCAAGGTGCTCAGTGCACTTCGCCACCGGTCGACAA
AAGCATCCAGACGACGGGTCTTCGACTGCCACGAAAGAGTGCCTACTCAA
GAGACCGCATTCTTCATCCGCGTCCAGCTGTTAATACGGTTCCCATAGCT
TTCGCGCAAACGGAAGTTCACCGCAATTCTCACCCTCGCTATTCCCAAGC
AAAGACAGCGACAGCCGCTGCGGACGCCATTGGGGAGACGGGGGCAGAGA
TGGGGGAACCAACTTATCCAGGTAGCGAGATTGAGGATATAAATGGGACA
ACGGTCGAGAAAGGAATGAGAGGCTCAAAGGACGAGAAGGTTCGAAGCGG
GGAGGCAGCTGGGCGAGTGCACGTTCGACTGGGGGGCGAGATTCTTGGGC
ACGCAAAGTTCGGGCAACTTCCGACTGTGTGGGCTGTGTCTAGAAGAAAA
CCAGAAGACCGCTGTGGGTGGAAAAAAACGTTTGGGAGCTGGGGCGACGT
TATGTAGACGACGGGTCTTCGACTGCCACGAAAGAGTGCCTACTCAAGAG
ACCGCATTCTTCATCCGCGTCCAGCTGTTAATACGGTTCCCATAGCTTTC
GCGCAAACGGAAGTTCACCGCAATTCTCACCCTCGCTATTCCCAAGCAAA
GACAGCGACAGCCGCTGCGGACGCCATTGGGGAGACGGGGGCAGAGATGG
GGGAACCAACTTATCCAGGTAGCGAGATTGAGGATATAAATGGGACAACG
GTCGAGAAAGGAATGAGAGGCTCAAAGGACGAGAAGGTTCGAAGCGGGGA
GGCAGCTGGGCGAGTGCACGTTCGACTGGGGGGCGAGATTCTTGGGCACG
CAAAGTTCGGGCAACTTCCGACTGTGTGGGCTGTGTCTAGAAGAAAACCA
GAAGACCGCTGTGGGTGGAAAAAAACGTTTGGGAGCTGGGGCGACGTTAT
GTAG back to top
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