mRNA_H-paniculata_contig1393.2409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1393.2409.1
Unique NamemRNA_H-paniculata_contig1393.2409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1393.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1393contigH-paniculata_contig1393:21239..21911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1393.2409.1prot_H-paniculata_contig1393.2409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1393 21378..21737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.5128613-UTR-H-paniculata_contig1393:21238..213771622929106.5128613-UTR-H-paniculata_contig1393:21238..21377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1393 21239..21377 +
1691480733.7899468-UTR-H-paniculata_contig1393:21238..213771691480733.7899468-UTR-H-paniculata_contig1393:21238..21377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1393 21239..21377 +
1622929106.5399494-UTR-H-paniculata_contig1393:21737..219111622929106.5399494-UTR-H-paniculata_contig1393:21737..21911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1393 21738..21911 +
1691480733.8203788-UTR-H-paniculata_contig1393:21737..219111691480733.8203788-UTR-H-paniculata_contig1393:21737..21911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1393 21738..21911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.525628-CDS-H-paniculata_contig1393:21377..217371622929106.525628-CDS-H-paniculata_contig1393:21377..21737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1393 21378..21737 +
1691480733.8105814-CDS-H-paniculata_contig1393:21377..217371691480733.8105814-CDS-H-paniculata_contig1393:21377..21737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1393 21378..21737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1393.2409.1

>prot_H-paniculata_contig1393.2409.1 ID=prot_H-paniculata_contig1393.2409.1|Name=mRNA_H-paniculata_contig1393.2409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MRLSCRRDGREKEPAPPPLTVGVATGAAEGAAPGSAIRPQPGATPAAVPG
PQPRPRPRPRPEMRSRPVCGVKSRSWWHTGARVKVDDAPAPRKEDDVLLA
VERGNSAVRGGRLAKRWRR*
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mRNA from alignment at H-paniculata_contig1393:21239..21911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1393.2409.1 ID=mRNA_H-paniculata_contig1393.2409.1|Name=mRNA_H-paniculata_contig1393.2409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=673bp|location=Sequence derived from alignment at H-paniculata_contig1393:21239..21911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAGAAAGGTTCGCCTGGATTGCGTATTCCGATACGTACGCCTCTATT
ACACTCCTGTGCGCCGGGTAAATGTCTGTGTGGACGTGCTCGCTGGAAAC
GTGACGGAGAACTACACCCGTGTGCCGTTGACGGGGTCAATGCGGTTATC
CTGTCGTCGTGACGGACGGGAGAAGGAGCCGGCGCCGCCTCCGCTCACGG
TCGGAGTCGCCACCGGAGCCGCCGAGGGAGCGGCACCTGGATCAGCGATA
CGACCCCAACCAGGAGCGACACCAGCGGCGGTGCCCGGACCTCAGCCGCG
GCCACGCCCTCGCCCTCGGCCCGAAATGCGATCGAGGCCCGTCTGTGGCG
TCAAATCCAGGAGCTGGTGGCACACGGGTGCAAGGGTTAAAGTAGATGAC
GCACCTGCTCCGCGAAAGGAGGATGATGTACTCCTGGCGGTGGAAAGGGG
AAACTCCGCGGTGCGCGGCGGACGGCTGGCAAAGCGCTGGCGAAGATGAG
ATGTTGCAGTGGGCGCAGCAATGGACGAGAGGAGGGCGCGTGCGGCAGCA
GGCGGCGCCGACGAAGGTTGAGGATGGAGGTGATCGATCTGGTCGGTCGC
GAACCGCCGTGGAAAAACTGGCCCGCGCACGATGGCCGATGACGTCGTAC
GGTCTGAACAGATGGAGCTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1393:21239..21911+

>mRNA_H-paniculata_contig1393.2409.1 ID=mRNA_H-paniculata_contig1393.2409.1|Name=mRNA_H-paniculata_contig1393.2409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig1393:21239..21911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTTATCCTGTCGTCGTGACGGACGGGAGAAGGAGCCGGCGCCGCC
TCCGCTCACGGTCGGAGTCGCCACCGGAGCCGCCGAGGGAGCGGCACCTG
GATCAGCGATACGACCCCAACCAGGAGCGACACCAGCGGCGGTGCCCGGA
CCTCAGCCGCGGCCACGCCCTCGCCCTCGGCCCGAAATGCGATCGAGGCC
CGTCTGTGGCGTCAAATCCAGGAGCTGGTGGCACACGGGTGCAAGGGTTA
AAGTAGATGACGCACCTGCTCCGCGAAAGGAGGATGATGTACTCCTGGCG
GTGGAAAGGGGAAACTCCGCGGTGCGCGGCGGACGGCTGGCAAAGCGCTG
GCGAAGATGAATGCGGTTATCCTGTCGTCGTGACGGACGGGAGAAGGAGC
CGGCGCCGCCTCCGCTCACGGTCGGAGTCGCCACCGGAGCCGCCGAGGGA
GCGGCACCTGGATCAGCGATACGACCCCAACCAGGAGCGACACCAGCGGC
GGTGCCCGGACCTCAGCCGCGGCCACGCCCTCGCCCTCGGCCCGAAATGC
GATCGAGGCCCGTCTGTGGCGTCAAATCCAGGAGCTGGTGGCACACGGGT
GCAAGGGTTAAAGTAGATGACGCACCTGCTCCGCGAAAGGAGGATGATGT
ACTCCTGGCGGTGGAAAGGGGAAACTCCGCGGTGCGCGGCGGACGGCTGG
CAAAGCGCTGGCGAAGATGA
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