prot_H-paniculata_contig13841.2356.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13841.2356.1
Unique Nameprot_H-paniculata_contig13841.2356.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length355
Homology
BLAST of mRNA_H-paniculata_contig13841.2356.1 vs. uniprot
Match: D7FWC6_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC6_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.030e-89
Identity = 202/391 (51.66%), Postives = 244/391 (62.40%), Query Frame = 0
Query:    1 GRRAATRAGTTDTITRK---TGNPMQAATTGDLSDALGVRAMGESAARVVIARMMINRKRRLLRHKEEKGHALQPKRAKADDRNDRPAARRV---------GFSSIKSKGGR----------VFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLRVGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENVDALFCKAVVSAKLGEYFDALKDLSAAISFY----HVQA--SCGVSATK--------AGRKGGYSNRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLDRALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRHAKQQT 355
            GRRAATRAG  D + R+     NP + A+TG+L  ALGV   GE+AAR+VI RM+ NRK R+ +     G     + A A      P ++R            ++ + +GGR             G +   G  SGG  G  +F+TVLSSMAK  +REGL+EI SNP DLLR GF+E++P KHGSTALGCHLI GW EQ  GN+ RA GH+ RAVA+EPENV+ALFCKAV+SA+L E FDALKD SAAISF     H  A    G S TK        +G  G                      ++ V LA LY NRALV+VCLGDD +ALDDLDRA+AR+TRN+TYRSNRALILRRVGDFRGAQQDYSRIRALQ+L+Q  A R A Q+T
Sbjct:  561 GRRAATRAGMFDEVLRRDQTNANPTEMASTGNLRSALGVVVTGEAAARLVIGRMIQNRKARMAKTAMSNGGEDGSRGAGACAYG--PISKRAPRGGLTGGRSMAAGRDRGGRGGSAGALKRKPVKGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGLQEIKSNPLDLLRRGFVEVEPTKHGSTALGCHLIKGWEEQTNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALQQRGASNTKRPSNGVTASGSAGXXXXXXXXXXXXXXXXXXXXXXKSNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQILEQTAADRSATQET 949          
BLAST of mRNA_H-paniculata_contig13841.2356.1 vs. uniprot
Match: A0A6H5K1M1_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M1_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.040e-81
Identity = 194/391 (49.62%), Postives = 231/391 (59.08%), Query Frame = 0
Query:    1 GRRAATRAGTTDTITRKTG---NPMQAATTGDLSDALGVRAMGESAARVVIARMMINRKRRLLRHKEEKGH-----------ALQPKRAKADDRNDRPAAR-RVGFSSIKSKGG-------RVFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLRVGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENVDALFCKAVVSAKLGEYFDALKDLSAAISFY----HVQA--SCGVSATK--------AGRKGGYSNRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLDRALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRHAKQQT 355
            GRRAATRAG  D + R      NP + ATTG+L  ALGV   GE+AAR VI RM+ NRK ++ +    KG                  +K  DR  +   R +V     + +GG       +   G +   G  SGG  G  +F+TVLSSMAK  +REGL EI SNP DLLR GF E++PAKHGSTALGCHLI GW EQ  GN+ RA GH+ RAVA+EPENV+ALFCKAV+SA+L E FDALKD SAAISF     H  A    G S TK        +G   G     R GG  R   G    GE+ V LA LY NRALV+VCLGDD +ALDDLDRA+AR+TRN+T                GAQQDYSRIRALQ+L+Q    R+A Q+T
Sbjct:  226 GRRAATRAGMFDEVLRSDQTNVNPTETATTGNLRSALGVVVTGEAAARAVIGRMIRNRKAKMAKTAMSKGGEDCSSGVTVGACAHGPISKGADRGGKTGGRSKVACGDREGRGGSAGVLKNKPAKGVSISAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGFAEVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALRQSGASNTKRPSNWVTASGNAAGVYTHGRDGGEARTGQGGGTSGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNIT----------------GAQQDYSRIRALQMLEQTATDRNAIQET 600          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13841.2356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWC6_ECTSI1.030e-8951.66Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5K1M1_9PHAE1.040e-8149.62Cyclic nucleotide-binding domain-containing protei... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 310..343
e-value: 290.0
score: 2.1
coord: 276..309
e-value: 0.034
score: 23.3
coord: 200..233
e-value: 19.0
score: 12.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 276..309
score: 8.054
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 271..355
e-value: 3.8E-10
score: 41.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 113..235
e-value: 1.9E-6
score: 29.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 171..340
NoneNo IPR availablePANTHERPTHR44858FAMILY NOT NAMEDcoord: 180..336
NoneNo IPR availablePANTHERPTHR44858:SF1TETRATRICOPEPTIDE REPEAT PROTEIN 6coord: 180..336
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 276..343
score: 10.237
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 166..233
score: 7.307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13841contigH-paniculata_contig13841:3084..6520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13841.2356.1mRNA_H-paniculata_contig13841.2356.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13841 3084..6520 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13841.2356.1 ID=prot_H-paniculata_contig13841.2356.1|Name=mRNA_H-paniculata_contig13841.2356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
GRRAATRAGTTDTITRKTGNPMQAATTGDLSDALGVRAMGESAARVVIAR
MMINRKRRLLRHKEEKGHALQPKRAKADDRNDRPAARRVGFSSIKSKGGR
VFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLR
VGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENV
DALFCKAVVSAKLGEYFDALKDLSAAISFYHVQASCGVSATKAGRKGGYS
NRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLD
RALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRH
AKQQT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom