mRNA_H-paniculata_contig10014.24.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10014.24.1
Unique NamemRNA_H-paniculata_contig10014.24.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.430e-62
Identity = 111/267 (41.57%), Postives = 146/267 (54.68%), Query Frame = 1
Query:    1 LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHDFDGKIGIWRVCIVREAQRT-------TARRARGG----------------TYEVDITIDAEWYRELYVNDLLPDAKKK----------------------GTPKVLNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLV 666
            L  G   + RW   +  A+   RI PSL    K +R++FI D     +  +    + +H+DE+WFY +REKE+VR F GE+  G  +V H+SH+PK+M I A + P+P HDFDGKIGIWR+C++  AQR+       TA   R G                 YE D TIDAEWY++ Y++ LLP  K+K                      G P++LNS G   GW  +L TQP QSPDLNINDLG F SLK RVWG     +D+LV
Sbjct:   98 LEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.710e-32
Identity = 85/280 (30.36%), Postives = 131/280 (46.79%), Query Frame = 1
Query:   55 RVERRISPSLCFHHKTNRVNFILDHTCRNLRTFTIG-------FDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD------FDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKKKGTPKVLN---------------------STGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEH 792
            R   R+ P L   HK++R+ F+  H    LRT   G        DT+HIDE WFY  ++  R   +  +E V + K + K HI KVM + AV+   P +D      +DG+IG+W     R A R++  R RG       T+  + YR   ++ ++P  + K      N                     + G  GGW+  L +QP QSPDLN+ DLG+F +++S         +DDLV  V   ++  +   L++ + +L K    I +  G NDF++ H
Sbjct:    3 RCTSRLKPMLTDKHKSDRMAFVQRH----LRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVA--RPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVAAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKVMECIFKMGGDNDFKLPH 275          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.440e-32
Identity = 87/290 (30.00%), Postives = 138/290 (47.59%), Query Frame = 1
Query:    7 VGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD----FDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKKK-----GTPKV-----------------LNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEHTG 798
            +  S L R ++   + +      P L   +K  RV +IL+H   N R F   F  IHIDE WFY  R K+     PGE +  S   + K+H+ KVM +CA + P  + +    FDGKIGIW   +   A+R++  R +G        +D E Y+ + +  +LP   +K      TP++                 + +     GW+  ++TQP  SPD+N+ DLGFF S++S  + +    +D L+  V+  +D    +TL  V+ SL       L   G N++++ H G
Sbjct:  212 IPKSSLHRLVRRGDMRKHNGTTKPLLTAKNKLKRVEWILEHIDDNGR-FDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPHKATIREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACMEASLGVDGDNNYKLPHMG 499          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.120e-31
Identity = 91/290 (31.38%), Postives = 136/290 (46.90%), Query Frame = 1
Query:   22 LARWLKLMAVARVERRISPSLCFHHKTNRVNFILD--------HTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD----FDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKKK---------------------GTPKVLNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEH 792
            L R LK   + R    +SPSL    K  R+   L          +C     F    D IH+DE WF+  ++K       GEE + S   +HKSHIPK+M + AV  P  +H     FDGK+GI+   I   A+R++  +A+G    +  T+  + Y +  VN +LP    K                     G P+++ S  + G  + KL TQP  SPDLNI DLGFF ++++  + +    +D+ +D V   +     D L+ VW SL +R   I+   G N  ++EH
Sbjct:   95 LFRKLKAGVIRRATSTLSPSLTDACKYKRLLHCLSFLRLSKTTRSCPAAFKFHAMLDWIHLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRWKTLYIQQDGARPHCTDGCPELVASAASFG-LNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEH 382          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 121 bits (304), Expect = 8.460e-29
Identity = 84/276 (30.43%), Postives = 123/276 (44.57%), Query Frame = 1
Query:   76 PSLCFHHKTNRVNFILDHTCRNLR---TFTIGFDTIHIDEAWFYPIREKERVRRFPGE-----EKVGSIKVQHKSHIPKVMCICAVSCPNPEHDFDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKKK-----------------------GTPKVLNS------TGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEH 792
            P L   HKT+R+ + L H  ++      F   +DT+H+DE WFY  +  ++V    G+     E      VQ K HI KVM +CAV+   P  ++DGK+G+W V      QR +  R  G      I++  E YR + + D++P  K K                         P VL         G  GGWS     QP QSPDLN+ D GFF +++S          +DL+  V+  + +    TL + + S+      I+R  GGN F + H
Sbjct:   20 PLLTEKHKTDRLKWCLLHVTQSTDRQPVFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVA--RPRGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREVYRRMLLEDVIPAIKAKWEWVRDEGLGVPLVSPIWVQQDNAKPHVLPDDPEVLVAGCAGGWSILFRNQPAQSPDLNVLDCGFFNAIQSLQSVTVPRTAEDLISEVERAFASTTTTTLNKTFLSVQLIMQSIMRHNGGNAFGLSH 293          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A485L7X2_9STRA (Aste57867_17524 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7X2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.100e-28
Identity = 77/289 (26.64%), Postives = 140/289 (48.44%), Query Frame = 1
Query:    1 LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHT--CRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPN----PEHDFDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKKK---------------GTPKV--LNSTGTGG----GWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEV 786
            L++  S L  + K   +A+    + PSL   +K  R+ + +DH       + F   +DT+H+DE WF+  R +++V   PGE K+     + K H+ KVM + AV+ P      +  FDGK+G W    +  AQR + RR  G      + +  + YR + V++++P  + K                 P V  L++         GW  ++  QP  SPD+N+ DLGFF ++++         ++++V   +  + A ++ TL + + +L +   +++   GGND++V
Sbjct:  111 LSIPKSTLHCYFKRGIIAKYSSVVKPSLTDSNKVCRLKWAMDHVQDIDGAKFFDDMYDTVHVDEKWFFMTRLQKKVYGAPGE-KIKQRSCKSKRHLLKVMFLSAVARPRWDEAKQEWFDGKVGTWHFTEIVPAQRRSRRRDAGTLVMKTVPVTRDAYRAMLVDNVIPAIRSKWPADETKRVKIQQDNARPHVPPLDANVIAACKEEGWEMQIVCQPPNSPDMNVLDLGFFRAIQTLQAERYSSTLEEIVSATEEAWAAVNMSTLNKNFVTLQRCLQEVILNKGGNDYKV 398          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: W2QKX2_PHYPN (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QKX2_PHYPN)

HSP 1 Score: 119 bits (297), Expect = 2.580e-27
Identity = 91/287 (31.71%), Postives = 133/287 (46.34%), Query Frame = 1
Query:    1 LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNL---RTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCP----NPEHDFDGKIGIWRVC------IVREAQRTTARRARGGTYEVDI--TIDAEWYRE-----LYVN-DLLPDAKKKGTPKVLNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEHTG 798
            L V ++ + R LK  A  R    + P+L   ++  RV F L HT R       F   FD +HIDE  F    +++       EE+    + Q K  I K M I AV+ P    + +  FDG IGIW         IV     +  R A   T   DI   I A+W R      +Y+  D          P ++ + G  GGW  ++  QP+ SPDLN+ DLG+F S++S  +      V+ L+D V S + A   DTL +++ +L      I+RA GGN+++  H G
Sbjct:  106 LGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKRFNEDTDRKCYYLDANEEEPVRQR-QSKRFICKTMFIAAVARPRYDAHRKQAFDGTIGIWAFAEEPKGIIVLRNVESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIM-AAGRSGGWDIRMRCQPLNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDAVNSAFSAMKADTLNKIFMTLQTCMECIIRANGGNNYKTPHRG 390          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 119 bits (297), Expect = 6.610e-27
Identity = 82/291 (28.18%), Postives = 130/291 (44.67%), Query Frame = 1
Query:    7 VGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD----FDGKIGIWRVCIVREAQRTTARRARGGTYEVDI-TIDAEWYRELYVNDLLPDAKKK----------------GTPKVLNSTGT------GGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEHTG 798
            +  + L  ++K   + R    + P L   +K  RV F L    +    F   +DTIHIDE WFY     ++     GE +  S   + K  I KVM +CAV+ P  + D    FDGKIGIW   +   AQR +  R RG     +I +++A  Y+++ +  +LP  ++K                  P  L S           GW+  + TQP  SPD N+ DLGFF S+++  + +    +D L+  V+          L  ++ SL     + ++  G N +++ H G
Sbjct:  179 IARTTLGNYVKKGQILRHSGAVKPFLTEKNKKARVEFALS-LIKPDGKFEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSRAAVREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANVEEALVETSTIALNSIFLSLQCALEESIKVQGNNSYKLRHMG 467          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: A0A1R3I5M9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I5M9_9ROSI)

HSP 1 Score: 118 bits (295), Expect = 7.050e-27
Identity = 84/293 (28.67%), Postives = 137/293 (46.76%), Query Frame = 1
Query:    1 LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD----FDGKIGIWRVCIVREAQRTTARRARGGTYEVD--ITIDAEWYRELYVNDLLPDAKKK----------------GTPKV------LNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKS-RVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEH 792
            L +  S L R LK+ A+ R    + P+L F +K  R+ F L     N  TF   +DTIHIDE WFY IR+       P EE+      + K+ IPKVM + AV+ P  +      F GKIG++ +     A+R++  R   GT E     T++ +  +   +N ++P  ++K                  P V              G++  L  QP  SPDLN+ DLGFF +++S +        +DDL+  V++ ++ +     ++ + SL     +I++  G N +++ H
Sbjct:  116 LKISKSTLHRLLKIGAILRHSSPLRPNLTFENKIARLRFCLKMLESNDSTFKGMYDTIHIDEKWFYLIRKSVNYYLLPDEEEPHRT-CKSKNFIPKVMFLAAVARPRFDTAGNVLFSGKIGVFPLVTKEPAKRSSVNR-HAGTLETKPITTVNKDVMKTFLINKVIPTIREKWPRDNMRSPIYIQQDNARPHVKFDDADFKKATKENGFNVILTNQPANSPDLNVLDLGFFCAIQSLQQQAAAPKTIDDLIMAVENSFEEFSPVDSDKFFLSLQTCMREIMKVKGCNKYKILH 406          
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN)

HSP 1 Score: 119 bits (299), Expect = 7.550e-27
Identity = 77/291 (26.46%), Postives = 132/291 (45.36%), Query Frame = 1
Query:    1 LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNF---ILDHTCRNLRTFTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCICAVSCPNPEHD----FDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEWYRELYVNDLLPDAKK--------------------KGTPKVLNSTGTGGGWSEKLETQPVQSPDLNINDLGFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQILRAMGGNDFEVEH 792
            L +  S L  +    A  R   R+ P L   H+ +R+ F    +    RN R F    + +H+DE WFY  +E +       EE    + V++K++I KVM + AV+ P  +      +DGKIG+W   +   A+R++  R  G        +D + YR+     ++P  K                        P+V+ +  + GGW   ++  P  SPD N+NDLGFF S++S    +    ++DLV+ V+  Y   +  T+++V+ +L       +   G N +++ H
Sbjct:   98 LGIAKSSLHDYFLAGAFRRHTTRLKPLLSDQHRADRLKFAYGFVHRGPRNTRVFDSFMNYVHLDEKWFYLKKENQGFYLGTHEEP-PHLTVKNKNYIVKVMFLVAVARPRWDSKRHRIWDGKIGLWPFVVYEPAERSSKNRPAGTLELKTYNVDKDVYRQALCRMVIPSVKAVWPSGKRVFLQHDNAKPHVAADDPEVVAAC-SDGGWDMSIKPPPANSPDFNVNDLGFFTSIQSLQHKKKARTIEDLVNNVEEAYSQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPH 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10014.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.430e-6241.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4Z9D8_9STRA1.710e-3230.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A448ZNT1_9STRA2.440e-3230.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6G0X8U9_9STRA1.120e-3131.38Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0W8C4B7_PHYNI8.460e-2930.43Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A485L7X2_9STRA1.100e-2826.64Aste57867_17524 protein n=2 Tax=Aphanomyces stella... [more]
W2QKX2_PHYPN2.580e-2731.71HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
I6THG9_PSEMU6.610e-2728.18Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A1R3I5M9_9ROSI7.050e-2728.67Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
W2R9B9_PHYPN7.550e-2726.46DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10014contigH-paniculata_contig10014:758..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue9.1e-25
Seed eggNOG ortholog653948.CCA27213
Hectar predicted targeting categorymitochondrion
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size828
Cds size828
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.3330317-CDS-H-paniculata_contig10014:757..12551622928709.3330317-CDS-H-paniculata_contig10014:757..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10014 758..1255 +
1691480587.1598759-CDS-H-paniculata_contig10014:757..12551691480587.1598759-CDS-H-paniculata_contig10014:757..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10014 758..1255 +
1622928709.348776-CDS-H-paniculata_contig10014:1321..16511622928709.348776-CDS-H-paniculata_contig10014:1321..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10014 1322..1651 +
1691480587.1925027-CDS-H-paniculata_contig10014:1321..16511691480587.1925027-CDS-H-paniculata_contig10014:1321..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10014 1322..1651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10014.24.1prot_H-paniculata_contig10014.24.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10014 758..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10014.24.1

>prot_H-paniculata_contig10014.24.1 ID=prot_H-paniculata_contig10014.24.1|Name=mRNA_H-paniculata_contig10014.24.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
LTVGSSKLARWLKLMAVARVERRISPSLCFHHKTNRVNFILDHTCRNLRT
FTIGFDTIHIDEAWFYPIREKERVRRFPGEEKVGSIKVQHKSHIPKVMCI
CAVSCPNPEHDFDGKIGIWRVCIVREAQRTTARRARGGTYEVDITIDAEW
YRELYVNDLLPDAKKKGTPKVLNSTGTGGGWSEKLETQPVQSPDLNINDL
GFFVSLKSRVWGEGYGRVDDLVDGVKSMYDAYDVDTLERVWHSLFKRYNQ
ILRAMGGNDFEVEHTGTKPGSGKRG*
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mRNA from alignment at H-paniculata_contig10014:758..1651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10014.24.1 ID=mRNA_H-paniculata_contig10014.24.1|Name=mRNA_H-paniculata_contig10014.24.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at H-paniculata_contig10014:758..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACCGTCGGCAGCAGCAAGCTTGCTCGCTGGCTCAAACTCATGGCGGT AGCGAGGGTTGAGCGACGGATAAGCCCCTCGCTTTGTTTCCATCACAAAA CAAACCGCGTGAACTTCATCCTCGACCACACTTGCCGCAATCTCAGAACG TTCACGATAGGCTTCGACACAATTCACATTGACGAGGCGTGGTTCTACCC CATTCGCGAAAAGGAAAGGGTGCGAAGGTTCCCCGGGGAAGAAAAAGTTG GCTCGATCAAGGTGCAACACAAGAGTCACATCCCCAAAGTGATGTGTATC TGCGCCGTTTCGTGCCCCAATCCTGAACACGACTTCGACGGAAAGATCGG AATCTGGCGCGTTTGCATCGTTAGAGAGGCACAAAGGACTACCGCGCGGC GCGCCAGGGGCGGCACGTACGAGGTCGACATCACCATCGACGCAGAATGG TACCGGGAGTTGTACGTCAACGACCTCTTGCCAGACGCTAAGAAGAAGGT GTGGTGACTCCAGGGGTAGGAGGTCATCGCGCATTAAGACGGCGCGACGC TCCAAACGGACAAGGGTACGCCAAAGGTCTTAAACAGCACGGGGACGGGG GGGGGGTGGAGTGAGAAGCTAGAAACGCAGCCTGTGCAATCGCCGGATCT CAACATCAACGATTTGGGGTTTTTTGTGTCTCTGAAAAGTAGGGTATGGG GAGAGGGTTACGGCAGGGTCGACGACCTTGTAGATGGAGTGAAGAGCATG TACGACGCCTACGATGTAGACACGTTAGAGAGAGTATGGCATAGTCTGTT CAAGAGGTACAATCAGATTTTGCGAGCCATGGGAGGGAACGATTTCGAGG TAGAGCACACGGGCACAAAACCAGGCAGCGGGAAGAGGGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10014:758..1651+

>mRNA_H-paniculata_contig10014.24.1 ID=mRNA_H-paniculata_contig10014.24.1|Name=mRNA_H-paniculata_contig10014.24.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig10014:758..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACCGTCGGCAGCAGCAAGCTTGCTCGCTGGCTCAAACTCATGGCGGT
AGCGAGGGTTGAGCGACGGATAAGCCCCTCGCTTTGTTTCCATCACAAAA
CAAACCGCGTGAACTTCATCCTCGACCACACTTGCCGCAATCTCAGAACG
TTCACGATAGGCTTCGACACAATTCACATTGACGAGGCGTGGTTCTACCC
CATTCGCGAAAAGGAAAGGGTGCGAAGGTTCCCCGGGGAAGAAAAAGTTG
GCTCGATCAAGGTGCAACACAAGAGTCACATCCCCAAAGTGATGTGTATC
TGCGCCGTTTCGTGCCCCAATCCTGAACACGACTTCGACGGAAAGATCGG
AATCTGGCGCGTTTGCATCGTTAGAGAGGCACAAAGGACTACCGCGCGGC
GCGCCAGGGGCGGCACGTACGAGGTCGACATCACCATCGACGCAGAATGG
TACCGGGAGTTGTACGTCAACGACCTCTTGCCAGACGCTAAGAAGAAGCT
TACCGTCGGCAGCAGCAAGCTTGCTCGCTGGCTCAAACTCATGGCGGTAG
CGAGGGTTGAGCGACGGATAAGCCCCTCGCTTTGTTTCCATCACAAAACA
AACCGCGTGAACTTCATCCTCGACCACACTTGCCGCAATCTCAGAACGTT
CACGATAGGCTTCGACACAATTCACATTGACGAGGCGTGGTTCTACCCCA
TTCGCGAAAAGGAAAGGGTGCGAAGGTTCCCCGGGGAAGAAAAAGTTGGC
TCGATCAAGGTGCAACACAAGAGTCACATCCCCAAAGTGATGTGTATCTG
CGCCGTTTCGTGCCCCAATCCTGAACACGACTTCGACGGAAAGATCGGAA
TCTGGCGCGTTTGCATCGTTAGAGAGGCACAAAGGACTACCGCGCGGCGC
GCCAGGGGCGGCACGTACGAGGTCGACATCACCATCGACGCAGAATGGTA
CCGGGAGTTGTACGTCAACGACCTCTTGCCAGACGCTAAGAAGAAGGGTA
CGCCAAAGGTCTTAAACAGCACGGGGACGGGGGGGGGGTGGAGTGAGAAG
CTAGAAACGCAGCCTGTGCAATCGCCGGATCTCAACATCAACGATTTGGG
GTTTTTTGTGTCTCTGAAAAGTAGGGTATGGGGAGAGGGTTACGGCAGGG
TCGACGACCTTGTAGATGGAGTGAAGAGCATGTACGACGCCTACGATGTA
GACACGTTAGAGAGAGTATGGCATAGTCTGTTCAAGAGGTACAATCAGAT
TTTGCGAGCCATGGGAGGGAACGATTTCGAGGTAGAGCACACGGGCACAA
AACCAGGCAGCGGGAAGAGGGGTTAGGGTACGCCAAAGGTCTTAAACAGC
ACGGGGACGGGGGGGGGGTGGAGTGAGAAGCTAGAAACGCAGCCTGTGCA
ATCGCCGGATCTCAACATCAACGATTTGGGGTTTTTTGTGTCTCTGAAAA
GTAGGGTATGGGGAGAGGGTTACGGCAGGGTCGACGACCTTGTAGATGGA
GTGAAGAGCATGTACGACGCCTACGATGTAGACACGTTAGAGAGAGTATG
GCATAGTCTGTTCAAGAGGTACAATCAGATTTTGCGAGCCATGGGAGGGA
ACGATTTCGAGGTAGAGCACACGGGCACAAAACCAGGCAGCGGGAAGAGG
GGTTAG
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