mRNA_H-paniculata_contig1383.2350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1383.2350.1
Unique NamemRNA_H-paniculata_contig1383.2350.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.710e-36
Identity = 81/156 (51.92%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  284 GFLAITDSKGFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPRKIAS 751
            G LA  D   F I EGWFK K DKG  R+  GS                         +  E  AEM  QA RATGDYHDA+TDKMFM+WLE RL PAFK  + +KKMILVLD  S+HHGYD EVGVPE+NSK YN  LLRK++ + I V R++ S
Sbjct:  317 GALAAVDENNFPIPEGWFKPK-DKGKGRQGAGS-------------------------MGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTS 446          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.150e-31
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  308 KGFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +GF I+EGWFK K ++  K K                    GE D   F++SDE  AE   QA  ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:  248 EGFPIREGWFKAKENRAKKIKP-------------------GEAD---FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 369          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.290e-31
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  308 KGFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +GF I+EGWFK K ++  K K                    GE D   F++SDE  AE   QA  ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:  204 EGFPIREGWFKAKENRAKKIKP-------------------GEAD---FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 325          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.190e-31
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  308 KGFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +GF I+EGWFK K ++  K K                    GE D   F++SDE  AE   QA  ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:  325 EGFPIREGWFKAKENRAKKIKP-------------------GEAD---FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 446          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.830e-31
Identity = 73/144 (50.69%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  308 KGFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +G  I+EGWFK K ++  K K                    GE D   F++SDE  AE   QA  ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:  166 EGLPIREGWFKAKENRAKKIKP-------------------GEAD---FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 287          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 9.310e-31
Identity = 76/146 (52.05%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  311 GFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEM--FPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPRK 742
            GF I+EGWFK+            +G GKK                   K+ DE  AE   QA  A GDYH A+TD MFM+WLEHRL PA+  +  F  KKMILVLD  S+HHG+D EV VPETN+KK+NVDLLRKF AKSI V RK
Sbjct:  361 GFPIEEGWFKE------------TGSGKK-------------------KMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRK 475          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5K9W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.000e-30
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  458 LSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +SDE  AE   Q   ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:    1 MSDEQTAEFLWQVKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 94          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.530e-30
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 2
Query:  458 LSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEM--FPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPRK 742
            + DE  AE   QA  A GDYH A+TD MFM+WLEHRL PA+  +  F  K+MILVLD  S+HHG+D EV VPETN+KK+NVDLLR F AKSI V RK
Sbjct:    1 MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRK 97          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5JRA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.100e-29
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  443 DTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            +  F++SDE  AE   QA  ATGDYH+A+TD MFM WL+HRL PAF   F +KKM LVL+  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:   72 EADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDPQFKNKKMFLVLNNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 170          
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Match: A0A6H5KL68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL68_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.820e-29
Identity = 72/143 (50.35%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  311 GFRIKEGWFKDKTDKGTKRKDKGSGKGKKKSVPTVEHGNAGEQDDTPFKLSDETIAEMF*QAMRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGYDPEVGVPETNSKKYNVDLLRKFEAKSIAVPR 739
            GF I+EGWFK K ++  K K                    GE D   F++SDE  AE   QA  ATG Y++A+TD MFM WL+HRL PAF   F +KKM LVLD  S+HH +D EV VPETNSKKYNV+LLRK+   S  V R
Sbjct:  200 GFPIREGWFKAKENRAKKIKP-------------------GEAD---FEMSDEQTAEFLWQAKLATGYYNNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1383.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI5.710e-3651.92Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KP14_9PHAE1.150e-3151.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE1.290e-3151.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX2_9PHAE3.190e-3151.39Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE74_9PHAE5.830e-3150.69Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI9.310e-3152.05DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5K9W3_9PHAE9.000e-3061.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEG4_9PHAE9.530e-3062.89DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JRA8_9PHAE1.100e-2959.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KL68_9PHAE2.820e-2950.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1383contigH-paniculata_contig1383:2996..3963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size968
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1383.2350.1prot_H-paniculata_contig1383.2350.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1383 3492..3842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.296834-UTR-H-paniculata_contig1383:2995..34911622929099.296834-UTR-H-paniculata_contig1383:2995..3491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2996..3491 +
1691480731.0041542-UTR-H-paniculata_contig1383:2995..34911691480731.0041542-UTR-H-paniculata_contig1383:2995..3491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2996..3491 +
1622929099.3307188-UTR-H-paniculata_contig1383:3842..39631622929099.3307188-UTR-H-paniculata_contig1383:3842..3963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 3843..3963 +
1691480731.022525-UTR-H-paniculata_contig1383:3842..39631691480731.022525-UTR-H-paniculata_contig1383:3842..3963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 3843..3963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.3121402-CDS-H-paniculata_contig1383:3491..38421622929099.3121402-CDS-H-paniculata_contig1383:3491..3842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1383 3492..3842 +
1691480731.0129485-CDS-H-paniculata_contig1383:3491..38421691480731.0129485-CDS-H-paniculata_contig1383:3491..3842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1383 3492..3842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1383.2350.1

>prot_H-paniculata_contig1383.2350.1 ID=prot_H-paniculata_contig1383.2350.1|Name=mRNA_H-paniculata_contig1383.2350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MRATGDYHDAVTDKMFMDWLEHRLKPAFKEMFPHKKMILVLDKVSFHHGY
DPEVGVPETNSKKYNVDLLRKFEAKSIAVPRKIASVDKDGKKVDKVVLQI
SRYQRKVRSPTSVVPV*
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mRNA from alignment at H-paniculata_contig1383:2996..3963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1383.2350.1 ID=mRNA_H-paniculata_contig1383.2350.1|Name=mRNA_H-paniculata_contig1383.2350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=968bp|location=Sequence derived from alignment at H-paniculata_contig1383:2996..3963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCAACAGCATGGAGGATTCGGTGACGCAAACGGCAGCAGTCTTGCG CATGAGGATGGCCCGTATTCGCCAGTTTATTGTCGAGAACGATCGCGCAG TCAAACTTGAGGAGAGCGAAACACATGTCCGAGTGTTCATGGATGAATCA TTTTGCAACTAGGTCCATGGTTCGGCGTATTCGTATTTTGGTACGGACAA GGATGGGGTAGTGCAGGACGGCTTTAGTAGAACGTCAGGAAAGGGCTTGC GCATGATCATGGTGAATGCGATCACACGATTTGGGGTTTTTGGCAATCAC AGACAGTAAGGGTTTTCGCATCAAGGAGGGTTGGTTCAAAGATAAGACTG ACAAGGGTACGAAGCGTAAGGATAAGGGTAGCGGTAAGGGTAAGAAGAAG AGTGTCCCCACGGTTGAGCATGGTAACGCAGGCGAGCAAGATGATACGCC TTTCAAACTCAGTGATGAAACGATAGCAGAGATGTTTTGACAGGCCATGA GAGCGACGGGGGATTACCATGATGCCGTGACTGACAAAATGTTTATGGAC TGGCTTGAGCACCGCCTCAAGCCAGCTTTTAAGGAGATGTTCCCACACAA AAAGATGATCCTTGTTCTGGACAAAGTGTCATTTCACCATGGGTACGACC CCGAAGTTGGGGTGCCAGAAACCAACAGCAAGAAATATAACGTCGACCTG TTGCGCAAGTTTGAAGCCAAGTCTATTGCAGTCCCCCGTAAGATCGCGTC CGTAGACAAGGATGGTAAGAAGGTCGACAAGGTCGTTCTTCAGATTTCGA GGTACCAGCGGAAGGTTCGTTCCCCAACAAGTGTGGTGCCGGTCTAAGCA AAGAGGAGGTTGCGGCTGCCACTCCGGCATTCATTCAGGAAAAACACCCT GAAAGGCTTGTTGAGCGTGTGGAAGCATTCATGTCGAAGGAGGGTTGGGA GTTGATTTGGACGCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1383:2996..3963+

>mRNA_H-paniculata_contig1383.2350.1 ID=mRNA_H-paniculata_contig1383.2350.1|Name=mRNA_H-paniculata_contig1383.2350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1383:2996..3963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCGACGGGGGATTACCATGATGCCGTGACTGACAAAATGTTTAT
GGACTGGCTTGAGCACCGCCTCAAGCCAGCTTTTAAGGAGATGTTCCCAC
ACAAAAAGATGATCCTTGTTCTGGACAAAGTGTCATTTCACCATGGGTAC
GACCCCGAAGTTGGGGTGCCAGAAACCAACAGCAAGAAATATAACGTCGA
CCTGTTGCGCAAGTTTGAAGCCAAGTCTATTGCAGTCCCCCGTAAGATCG
CGTCCGTAGACAAGGATGGTAAGAAGGTCGACAAGGTCGTTCTTCAGATT
TCGAGGTACCAGCGGAAGGTTCGTTCCCCAACAAGTGTGGTGCCGGTCTA
AATGAGAGCGACGGGGGATTACCATGATGCCGTGACTGACAAAATGTTTA
TGGACTGGCTTGAGCACCGCCTCAAGCCAGCTTTTAAGGAGATGTTCCCA
CACAAAAAGATGATCCTTGTTCTGGACAAAGTGTCATTTCACCATGGGTA
CGACCCCGAAGTTGGGGTGCCAGAAACCAACAGCAAGAAATATAACGTCG
ACCTGTTGCGCAAGTTTGAAGCCAAGTCTATTGCAGTCCCCCGTAAGATC
GCGTCCGTAGACAAGGATGGTAAGAAGGTCGACAAGGTCGTTCTTCAGAT
TTCGAGGTACCAGCGGAAGGTTCGTTCCCCAACAAGTGTGGTGCCGGTCT
AA
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