prot_H-paniculata_contig1382.2345.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1382.2345.1
Unique Nameprot_H-paniculata_contig1382.2345.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length461
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1382.2345.1 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.330e-23
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:  361 SKEFPQNLECAMCLGPIAIVAVFACGHEACWKCAHEWCRQGTTPTMDCPTCRAPVPRNDFRRCVILDENMPLAYSERSKRNGKERKKFDAPVRLITDA 458
            S+E P+ LECA+C  P+A+ A+FACGH +CW+CAH+WC + T+ TMDCPTC   VPR+DFRRCV+LDE +  A +     + + R + +   +L  +A
Sbjct:  297 SQELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREA 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1382.2345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I3_9PHAE2.330e-2347.96RING-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 358..451
e-value: 1.8E-12
score: 48.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 370..412
score: 10.822
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 363..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1382contigH-paniculata_contig1382:1051..7204 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1382.2345.1mRNA_H-paniculata_contig1382.2345.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1382 1001..7482 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1382.2345.1 ID=prot_H-paniculata_contig1382.2345.1|Name=mRNA_H-paniculata_contig1382.2345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=461bp
MEELWTDALNLNAGESSGEVMSYGHERGCVNDGSSDDEEEEDEGRPPKRR
RGKQPLAHLRQSMRYHHNTADNGSNNGMHNDQQHLSDPAAVAPAAAAAAV
TAARTATGSSDEDEDPGDEGGSEDGGGDDDEELDDDAKSTLSSSVSQNPN
EIIEILSEEEEVEEDEGDDEDEEEEDGEEDDIDMHPRHSSTPASLNLSDV
ALTANSGNNSNNNSLVVSSARGTPAPGAVRRCWETGLGGQDSWSAVPAAS
AAAASAGGPSSVDRKTRCSRNNSADDDGDHQCHNQHRGEAGVAAAAEGNR
IRSRATLRLSAPSPAGGGKDGGKMSPEEKRAMTEAEQLAASSGAASGMKS
KDQVVGGGGMSKEFPQNLECAMCLGPIAIVAVFACGHEACWKCAHEWCRQ
GTTPTMDCPTCRAPVPRNDFRRCVILDENMPLAYSERSKRNGKERKKFDA
PVRLITDALL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING