mRNA_H-paniculata_contig1380.2333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1380.2333.1
Unique NamemRNA_H-paniculata_contig1380.2333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1380.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1380contigH-paniculata_contig1380:19136..19773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size178
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.3461905-CDS-H-paniculata_contig1380:19136..192231622929097.3461905-CDS-H-paniculata_contig1380:19136..19223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1380 19137..19223 -
1691480730.2130957-CDS-H-paniculata_contig1380:19136..192231691480730.2130957-CDS-H-paniculata_contig1380:19136..19223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1380 19137..19223 -
1622929097.3618736-CDS-H-paniculata_contig1380:19683..197731622929097.3618736-CDS-H-paniculata_contig1380:19683..19773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1380 19684..19773 -
1691480730.22578-CDS-H-paniculata_contig1380:19683..197731691480730.22578-CDS-H-paniculata_contig1380:19683..19773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1380 19684..19773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1380.2333.1prot_H-paniculata_contig1380.2333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1380 19137..19773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1380.2333.1

>prot_H-paniculata_contig1380.2333.1 ID=prot_H-paniculata_contig1380.2333.1|Name=mRNA_H-paniculata_contig1380.2333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
GGIEVERVDHAVPVVLAAIQFLRESVWKQQVRDHMIAKDSWGRTAVAHAV
LSRRPQVFD
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mRNA from alignment at H-paniculata_contig1380:19136..19773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1380.2333.1 ID=mRNA_H-paniculata_contig1380.2333.1|Name=mRNA_H-paniculata_contig1380.2333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at H-paniculata_contig1380:19136..19773- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGCATTGAAGTGGAGAGAGTAGATCATGCCGTGCCTGTCGTCCTCGC
GGCCATCCAGTTTTTGAGAGAAAGCGTATGGAAGCAACAGGTTAAGTTAG
AGGACAGCAGCGTATTTCCGCTTGATTTATCCCAACTAAAATTTTATGCG
CTGCCACTTTTTCGATCTGTGGGGTATGGTCGGCTTCTCCTTCATGCCAG
AACGCTGATTAAGCTTGGGCTCGGAGAGGAGTTCCTTAGTGACCATATCG
CATACTCAAATCACACAATTGATGGATTATCCCACATAGTCAAGCTGGAC
TTCTCATACGGGAGTCGCTATTCGCGCTATGCGCTTCCTCAACGATTCCC
AGTTGCTGTGATGCCCCGCTTAACGTTGATGTATAATGATATTTTTCGCT
GTTGGGGACAATTCCGCTGTGGCGTGGGCTGATTCTCATAACATGGACGC
AAACATAACCATCGATACCCGGGTCACCATGTCCCTCTCACTATTTGACA
AAATTGTACTTATATGCTATCTTGGTTTTGACGGGATGTTGATTTCGCAG
GTACGGGACCATATGATAGCAAAGGACTCATGGGGCAGAACTGCGGTGGC
ACATGCGGTCTTATCCAGACGGCCTCAAGTATTCGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1380:19136..19773-

>mRNA_H-paniculata_contig1380.2333.1 ID=mRNA_H-paniculata_contig1380.2333.1|Name=mRNA_H-paniculata_contig1380.2333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig1380:19136..19773- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGCATTGAAGTGGAGAGAGTAGATCATGCCGTGCCTGTCGTCCTCGC
GGCCATCCAGTTTTTGAGAGAAAGCGTATGGAAGCAACAGGGAGGCATTG
AAGTGGAGAGAGTAGATCATGCCGTGCCTGTCGTCCTCGCGGCCATCCAG
TTTTTGAGAGAAAGCGTATGGAAGCAACAGGTACGGGACCATATGATAGC
AAAGGACTCATGGGGCAGAACTGCGGTGGCACATGCGGTCTTATCCAGAC
GGCCTCAAGTATTCGACGTACGGGACCATATGATAGCAAAGGACTCATGG
GGCAGAACTGCGGTGGCACATGCGGTCTTATCCAGACGGCCTCAAGTATT
CGAC
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