mRNA_H-paniculata_contig137.2277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig137.2277.1
Unique NamemRNA_H-paniculata_contig137.2277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: D8LF06_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF06_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 1.130e-101
Identity = 163/216 (75.46%), Postives = 183/216 (84.72%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVVRAP------VKGEAGEALVKPV 1463
            MDTLLG+AGEGFVV+AADAQVARSILLY++N+DKI+ L+D+K LA  GPQSDCV+FTEYISKNM LYELNNDVKL TKAAATFIRGELAKALRKGP QT +L+GGVDK+  GK EASL+W+DYLGT  KVPYGAHGYG+ FT SVMDR+YVKGL+LDEA+ IID CI ELHTRFLIAQ NFVIKV+TAEGIKVVR P        G + EA   PV
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVVRGPPTPDLGAAGASAEAAAVPV 216
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A836CPT6_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT6_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.550e-68
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVVR 1418
            MD+L GVAG+GFVV+AADAQVARSILLYQ+++DKI  L   K++A  GPQ+DC  F EYI KNM LYELNND++L+TKAAA +IR ELA ALRKGP Q ++L+GGVD      G A+LYW+DYLGT   V YGA GYG+ FT S++DR Y  G+   +A+ ++  CI  LH RFLIAQ NFVIKV+  +GI+V++
Sbjct:    1 MDSLFGVAGDGFVVLAADAQVARSILLYQNDLDKIKELDSHKMMALAGPQADCNLFGEYIQKNMALYELNNDLRLSTKAAANYIRRELATALRKGPYQVNMLMGGVDA-----GAAALYWLDYLGTLQPVKYGAQGYGAAFTLSLLDRSYRVGMAEADAVELVRSCIAALHKRFLIAQPNFVIKVVDKDGIRVLK 190
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A6U4C0Y9_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C0Y9_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.450e-62
Identity = 106/194 (54.64%), Postives = 145/194 (74.74%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVV 1415
            MD+ +G+ G+GFV++AADA   RSIL+Y+ ++DKI  +S+++++AT GPQ+DC  F EYI KNM LYEL N + L+T  AA FIRGELAKALR+GP Q ++LLGG  K  E    ASL+WMDYLGT  KV YGAHGY SNF  S++D  + KGLT ++A+ ++ KCI EL TRF+IA   + +KV+ +EG++V+
Sbjct:   44 MDSTIGMRGDGFVLLAADANAGRSILIYKQDLDKILPISENQIMATVGPQADCSVFGEYIQKNMRLYELENQINLSTFGAANFIRGELAKALRRGPYQVNLLLGGAAKDEE----ASLFWMDYLGTLQKVNYGAHGYASNFVLSLLDAHWEKGLTEEQAIEVLRKCIKELETRFMIALPKWSVKVVDSEGVRVI 233
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: W7TFQ9_9STRA (Proteasome subunit beta n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFQ9_9STRA)

HSP 1 Score: 216 bits (549), Expect = 5.200e-62
Identity = 109/192 (56.77%), Postives = 145/192 (75.52%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIK 1409
            MDTLLG+ G+GFV+IAADA  ARSIL+++++ DKI+AL   KLLA  GP +DC   TEY+ KNM LYE NND+KL T AAA FIR  LA ALRKGP QT++LLGG D+K +G   A+LY++DYLG+  KV +GA GY SNFT S+ DR+Y +G+TL EA V+++K   EL  RFLI+Q  +++KV+  +G++
Sbjct:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEK-DG---AALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A7S2FKQ2_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKQ2_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.560e-61
Identity = 107/196 (54.59%), Postives = 142/196 (72.45%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVVRA 1421
            MDT+LG+ G+GF +I AD   ARSI+++    DKI+ L   K++   GPQ D   F EYI KNMTLYELNND+KL+T A A F+R +LA ALRKGP QT++LLGG D   EG G ASLY++D     T V +GAHGY SNF  S+ DR+Y +G++++EA  +IDKCI ELHTRFLI+Q NF+IK++  +G++V+ A
Sbjct:   25 MDTVLGIKGDGFTMIVADRTSARSIMVFNQAEDKITELDSHKIIGQSGPQCDTANFAEYIQKNMTLYELNNDMKLSTFATANFMRRQLATALRKGPYQTNILLGGYD---EGAG-ASLYFLDLYSALTPVNFGAHGYASNFCLSIFDREYKEGMSVEEAKAVIDKCIAELHTRFLISQPNFLIKIVDKDGVRVMEA 216
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: K8ZB45_NANGC (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZB45_NANGC)

HSP 1 Score: 216 bits (549), Expect = 2.390e-60
Identity = 109/192 (56.77%), Postives = 145/192 (75.52%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIK 1409
            MDTLLG+ G+GFV+IAADA  ARSIL+++++ DKI+AL   KLLA  GP +DC   TEY+ KNM LYE NND+KL T AAA FIR  LA ALRKGP QT++LLGG D+K +G   A+LY++DYLG+  KV +GA GY SNFT S+ DR+Y +G+TL EA V+++K   EL  RFLI+Q  +++KV+  +G++
Sbjct:  173 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEK-DG---AALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 360
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A7S2XJE8_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.670e-60
Identity = 112/194 (57.73%), Postives = 137/194 (70.62%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNND-VKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKV 1412
            MDT+ GV+ EG VVIAAD   ARSIL YQSN+DK++ LS    +   GP SD V FT+YI+KN  LYEL+ND ++L+T A A F RGELA ALRKGP Q +VLLGG D+   G    SLY++DY+G   KVPYG  GY   F  SVMDR + KGL   EA+ I++KCI EL TRFLI+Q NF+IKVI  +G+KV
Sbjct:    1 MDTVFGVSYEGGVVIAADQSNARSILTYQSNLDKVTELSSHSAMGVAGPNSDLVNFTQYIAKNFKLYELSNDGMQLSTAAQANFCRGELATALRKGPFQVNVLLGGFDEGVGG----SLYFLDYMGAMQKVPYGCQGYAGAFCLSVMDRQWTKGLDEAEAVAIVEKCIQELKTRFLISQPNFMIKVINKDGVKV 190
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A6V1PTT6_HETAK (Proteasome subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTT6_HETAK)

HSP 1 Score: 204 bits (520), Expect = 2.170e-58
Identity = 106/192 (55.21%), Postives = 136/192 (70.83%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIK 1409
            MD L G+ G+G+V++AADA   RSI++Y+S+ DKI  L  +KLLA  GP +D V F EYI KN+ LYEL ND+KLNT A A FIR  LA ALRKGP QT++LLGG D   EGK +  LYWMDYLG   K+ +GAHGYGS+FT S+ D ++ +GL+  E + II  CI EL TRFLI+   FV K++ A G++
Sbjct:    1 MDALFGLKGDGYVMLAADANQGRSIIVYKSDYDKIMPLDSNKLLAQAGPNADTVNFGEYIQKNLALYELTNDLKLNTSATAHFIRRTLADALRKGPYQTNLLLGGKD---EGK-DPELYWMDYLGAMHKLNFGAHGYGSSFTLSIFDSEWREGLSEAEGLEIIRHCIAELRTRFLISMPKFVCKIVDANGMR 188
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: B7FVS5_PHATC (Proteasome subunit beta n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVS5_PHATC)

HSP 1 Score: 204 bits (519), Expect = 3.800e-58
Identity = 101/192 (52.60%), Postives = 135/192 (70.31%), Query Frame = 3 
Query:  834 MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIK 1409
            MDT+ GV  EG V++AAD   ARSILLYQ+N+DK+  L+    +   GP  D V F E+++KN+ LYEL+ND+KL+T A A F RGELA ALRKGP Q + LLGG D K      ASLY++DY+    KV YG+ GY SNF  S+MD++Y   L   +A+ I+++CIHELHTRFLI+Q NF+IKV+  +G++
Sbjct:    1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVG----ASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVR 188
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BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Match: A0A7S1Y0C9_9STRA (Proteasome subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y0C9_9STRA)

HSP 1 Score: 204 bits (519), Expect = 7.660e-58
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 3 
Query:  828 IRMDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQSDCVAFTEYISKNMTLYELNND-VKLNTKAAATFIRGELAKALRKGPVQTSVLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDYVKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVVRA 1421
            ++MDT+LG+  EG VV+A D   ARSI+ Y +N+DKI AL+    +   GP  D V FTEYI KN+ LYEL N+  KL+T+A A F R ELA ALRKGP Q +VLLGG D+K      ASLY++DYL    K+ YGA GY S F +S+MD++Y KG T  EA+ IID CI+E+HTRFLI Q NF+IKVI  +G++ V A
Sbjct:   19 LKMDTVLGIQYEGGVVLATDQSNARSIVSYLTNLDKIKALTSHSAMGVSGPNCDMVNFTEYIEKNLKLYELRNEGTKLSTRAQANFCRNELAVALRKGPYQVNVLLGGYDEKTSS---ASLYFLDYLAALQKLQYGAQGYASMFCTSIMDKEYRKGCTEAEALKIIDHCINEIHTRFLINQPNFIIKVIDKDGVRTVSA 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig137.2277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF06_ECTSI1.130e-10175.46Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CPT6_9STRA2.550e-6860.00Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A6U4C0Y9_9STRA1.450e-6254.64Proteasome subunit beta n=2 Tax=Phaeomonas parva T... [more]
W7TFQ9_9STRA5.200e-6256.77Proteasome subunit beta n=1 Tax=Nannochloropsis ga... [more]
A0A7S2FKQ2_9STRA1.560e-6154.59Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
K8ZB45_NANGC2.390e-6056.77Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2XJE8_9STRA3.670e-6057.73Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
A0A6V1PTT6_HETAK2.170e-5855.21Proteasome subunit beta n=1 Tax=Heterosigma akashi... [more]
B7FVS5_PHATC3.800e-5852.60Proteasome subunit beta n=2 Tax=Phaeodactylum tric... [more]
A0A7S1Y0C9_9STRA7.660e-5854.27Proteasome subunit beta n=1 Tax=Grammatophora ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig137contigH-paniculata_contig137:4239..9402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.2
Seed ortholog evalue1.2e-83
Seed eggNOG ortholog2880.D8LF06
Preferred namePSMB2
KEGG koko:K02734,ko:K08471,ko:K12847,ko:K18626
KEGG Pathwayko03040,ko03050,map03040,map03050
KEGG ModuleM00337,M00340,M00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0003674,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0014070,GO:0016020,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0177@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_006230.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04030,ko04812
Exons5
Model size2038
Cds size645
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.2484577-UTR-H-paniculata_contig137:4238..47981622929087.2484577-UTR-H-paniculata_contig137:4238..4798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig137 4239..4798 -
1691480726.2741628-UTR-H-paniculata_contig137:4238..47981691480726.2741628-UTR-H-paniculata_contig137:4238..4798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig137 4239..4798 -
1622929087.4328232-UTR-H-paniculata_contig137:8569..94021622929087.4328232-UTR-H-paniculata_contig137:8569..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig137 8570..9402 -
1691480726.3313437-UTR-H-paniculata_contig137:8569..94021691480726.3313437-UTR-H-paniculata_contig137:8569..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig137 8570..9402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.3586512-CDS-H-paniculata_contig137:4798..48911622929087.3586512-CDS-H-paniculata_contig137:4798..4891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 4799..4891 -
1691480726.2845092-CDS-H-paniculata_contig137:4798..48911691480726.2845092-CDS-H-paniculata_contig137:4798..4891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 4799..4891 -
1622929087.3760545-CDS-H-paniculata_contig137:5904..60691622929087.3760545-CDS-H-paniculata_contig137:5904..6069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 5905..6069 -
1691480726.2923667-CDS-H-paniculata_contig137:5904..60691691480726.2923667-CDS-H-paniculata_contig137:5904..6069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 5905..6069 -
1622929087.3892314-CDS-H-paniculata_contig137:6611..67371622929087.3892314-CDS-H-paniculata_contig137:6611..6737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 6612..6737 -
1691480726.3007166-CDS-H-paniculata_contig137:6611..67371691480726.3007166-CDS-H-paniculata_contig137:6611..6737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 6612..6737 -
1622929087.4027767-CDS-H-paniculata_contig137:7113..73421622929087.4027767-CDS-H-paniculata_contig137:7113..7342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 7114..7342 -
1691480726.3096032-CDS-H-paniculata_contig137:7113..73421691480726.3096032-CDS-H-paniculata_contig137:7113..7342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 7114..7342 -
1622929087.418317-CDS-H-paniculata_contig137:8537..85691622929087.418317-CDS-H-paniculata_contig137:8537..8569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 8538..8569 -
1691480726.3200083-CDS-H-paniculata_contig137:8537..85691691480726.3200083-CDS-H-paniculata_contig137:8537..8569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 8538..8569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig137.2277.1prot_H-paniculata_contig137.2277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig137 4799..8569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig137.2277.1

>prot_H-paniculata_contig137.2277.1 ID=prot_H-paniculata_contig137.2277.1|Name=mRNA_H-paniculata_contig137.2277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MDTLLGVAGEGFVVIAADAQVARSILLYQSNVDKISALSDDKLLATGGPQ
SDCVAFTEYISKNMTLYELNNDVKLNTKAAATFIRGELAKALRKGPVQTS
VLLGGVDKKAEGKGEASLYWMDYLGTQTKVPYGAHGYGSNFTSSVMDRDY
VKGLTLDEAMVIIDKCIHELHTRFLIAQTNFVIKVITAEGIKVVRAPVKG
EAGEALVKPVPVAA*
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mRNA from alignment at H-paniculata_contig137:4239..9402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig137.2277.1 ID=mRNA_H-paniculata_contig137.2277.1|Name=mRNA_H-paniculata_contig137.2277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5164bp|location=Sequence derived from alignment at H-paniculata_contig137:4239..9402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGAGCCAAGAGTACCGGTACTCAAACTTGAGTCATCTTTGTGGGCGCC
GCTACATGAACGTGGCATGGCTCATTCAATCAGCAATTGTTGGCAATTTC
ACAGGCTAGTCTTGCCACAGTAGCCCCACCCCACGAGCAAGGCACATATA
CTGTACTACTGACTACTGACTACTGACTACTGACTACTGACTACTGACTA
CTGGTTAGGAGGGATCGAAAAGAATTTAAGCATGCTCTTGGGTGTCATGT
CGCATGAGCTCTTCCAAAACATTCAATGAAGTATAGACAAATAGCGGAGG
AATACATTCAGCTACGTTCATGTACTGTCCGTCTGTCACTCACCAAAGGC
TGGGACGTGGAAACAGCAGCATGAGTACCAAGAACAGGGGAACGTCGAGA
TTGAAACCCTAGCTTATTGCTTCTGTCTACGACCATCTTATTCCTGGCCT
CAGTGCTGAGGAAACTGCTGTCTGTTCGCCGGTGACAAAGTGGATCGGAA
ACTAACCCGCCCGATTTCTTCAAGGGGAATCTTATTAGACGGTAGGATGA
TGACCAAAATATTGAGCTTTTGGATAACGACATTTGTAGCGTCACGAAAA
CGTATTGTGTAGGCGAAGAAATCTATTGCAGTCAAGTCGGTACGAGCAGT
TCTCCACTAGAATATTTCCTCTGCCTGAAGCCTTTGCAGTGTGTACGGGG
GAACAGGATTAAGCTGTTGGTGCCATAGCTGCAGTTTTTTCTGTACAGAT
TTTCTGGAAGACACCAAACATTTTTCTTGGGGCAGTGAGGGCTGGAAGCA
ACGCGGAAGGCAGCTACAGCATATTAGATCAGGATGGACACTTTGCTCGG
CGTTGCTGGGGAAGGGTGAGCTCTGCTGTGATTCAAGTGAACTTGCTGTA
TTGGAGGATATAATTGCCAGGAGTTGAATGCTTTGACCTTTTCTGGCTGT
GCCCTGCAGCACTTGCCAATGGTAGGAACTCTTCTTGTGTTACCTGTGGC
CAAATGTGAAAATACTACTGGAATTCTCATGGGCGTTTTCTCTCGTGTTC
TCAGCCGCCACAATTTGTAGACCTGAGACTGGCGGGGTCGCTTCCCTACC
GAAGACTGGACAGCTGCACAGATAACATCCATGTCACTCTATAGAATACA
AGGGGCTGCGATCTAGCACTCTAGTCAGGGGAAGTCCCTCAGGATCTCTA
CAGACTTGACGTGGGCGTTTTGCTGCATTTTGCATTTCAACCGCTGCTGT
TACCAGTGAGCACGGCCTACACAGGCACAGCAGTACCTGGTAAACTTGAG
ACTGTATAATAGACGTAAAATTCCACTGAGTGTACTGTATCTGTGCTATG
GGCCTCTCTCGAGAACCCTTGTCCCTCCTGTGTACTGTACTGTTGCAGGT
ACAAGTGCAACTGCATGGTGTCGTCAGTTCCACTAAAAGAGAACAAGAGG
GAGTAATGTAGAAGGTGGTGTAGCGATGTTGCAATACACGAGTTTCGTGA
TGCGAATGGCCAGGCAATCTTGGAGGCGTCGCTGGATATTCAAGGTTGAA
AGCAGCACTGGCCCTGCTAAGCTTTATCACTAGATCACAAACTCAGATAT
ACATGAATCCGCAGGTTGCATAACCTCTGTTTAGTGCTCGCATGCTCCAC
CGTCGATTAGACCTTTGCTGTTGCTGAACAATACTTTCAAGACCAGTTGG
TATGCTTGTACTAGGAAGTATGCTGACTTTTTTTAGACCTGCATTGCTCT
CTATCGTCACGTCGGCAGCTTACCCACCGGTAACCCCAAGTCCGATTTTC
GATTTGTTGACCGAACGTGGAACCGAAAATTTGAACACATGGTACGTGTT
CACTGGTTGGTATCCTAGCTCTTCAGAGCAGTAAGATCAGACAAAAAAAA
CACGAGAGAAATCGAACTGGTCACCAGTCATGTTCCAGCGACGACGATTA
TACAAGACATGAACCGAGCGATCAAATATTTGCTGGCATTCGCAATGTCT
CTTTTTGATAATGTCTTCTCAATTCGACGCACCTCACACGCGGTCCACGT
GATTATGCAGGTTCGTGGTGATAGCGGCTGACGCCCAGGTGGCCCGTTCT
ATCCTTCTCTACCAGAGCAACGTGGACAAAATCAGCGCATTGAGCGATGA
TAAGCTGCTCGCCACCGGCGGCCCCCAGTCCGATTGCGTAGCCTTCACGG
AGTACATATCCAAAAACATGACTCTCTACGAGCTGAATAACGATGTCAAG
CTCAATACCAAGGCGGCCGCCACTTTCATCAGGGGCGAGGTGAGTGACAA
CTAAGGCCGACTGCAGCTTGATGACCAGGAACCAAAGAATATCGCGTCGT
TCATTTTGGGTGGTGCTACATGGGCCATTTGGTTGCACCAGAAAGTACAT
TCGTACCGTGAGGGTCTCCCTTGCATTGCGTTGTCCCTCCTCATAAAACC
ACGCTTTTTCAACCTTCATAGCCAAAACCGCGTGAATCTCTGCACCTTTT
TTTTCACTAGTATTGGTGATTGTGAAATTGTTGAGAGGCCCGCTCACAAT
TATGACCATGAAAGCCAAAGGGAGATGTGTTCCTTGTAAGAGATGCCAAC
GTCGATTCTTGATCGTCGAATGTGGTTGTTGCCATGATGGTTTTGCTTGT
CGTGCATCTCGATAGCTGGCTAAAGCGCTCCGAAAGGGTCCAGTGCAAAC
GTCAGTGCTGCTCGGGGGTGTGGACAAGAAAGCGGAGGGCAAGGGTGAGG
CGTCCTTGTACTGGATGGACTACCTCGGGACACAGACCAAGGTAGGACAC
ATACTATTGCGTGTTGTCGTTTGCTCAGTAGCCAGCTGTAAGGTACGCGT
GGAGACAACGAATCTACGGAACTACCTGTGATCCCGCAAATTACCTTTAC
GTATAGAAGACTACTTTATCGCGTCGAGGTTACGCAGTTAGAGGGGTGTG
ATGATCTGCTCTTTTCTCTTCATCTGTTTGAGAGAGACGAAAGTACCTCA
AAAAGCGTTTGAAAGTCTGGCGTGCGCCTTGAATAGTGCCAATCTTACTG
ATACCGGATCGAAGATGACTCTCCAAACACGGGACTTGCACCCAGCCCAT
GCTATATTGCCTGGCTATTAGCTTCGTAGGCTCGGTAGAGCTCGTGCACT
GCTTGAGGAATGCCTGCGAAGTCATTATAACCAGTGACGTATTCCATCGA
TCCACATGCCCCACTTACGCTTATGCTTTGGGATGTATTATATCGGCGGG
TCTTTCTTGGAAATCTGTCGTAATGACCTGTTTGACTGATGAAAACCCGC
GCATTTCGCTGGCGTGCTGCGTGTGCTTCACAGGTGCCATACGGCGCACA
TGGATACGGCTCGAATTTCACGTCGTCAGTTATGGACCGGGATTACGTCA
AAGGGCTTACGTTGGACGAGGCGATGGTGATCATTGACAAGTGCATCCAT
GAGCTACACACGCGGTTTCTCATCGCTCAGACAAACTTCGTTATCAAGGT
GTGTGTATGATCTAGAGAGGTGTATAGTGGTAGGCTGCGCCCATCTGCGC
TTTATTGTATGGGACTTGCCAATGTACGCATACTATCCGCGTTTTCCCAA
GAATCCGTTCAATTTTATTGGGGTCATTTTTGGAGCCACTCTTCTCCCGA
AAGTGGCTGCCATGACACATTGTGACTGAGTCAACTCTGCGATCTCTTTT
ATCTCTTGTTGCGATATGCACTACATCGAGGGATCTATTGCTGCATGTAC
ACCATCCAATTGATGCCAACCCCAAGAAAAGTGTAGCTCAATGTTTCGTA
TGTGGAGAAAAGGGTTACGTATCCTCCACCGTAAGAAGCGGGTAAGATGC
TATCGTGTTCAGTCTGGTGTCAGCGCACACGCCGACCATCAACAGGCCAC
ATCTCCTGTCTCTCACACCTCAGCTACGCTGTTAGAGTAGAATATATAGA
GGACGAGGAACCATCAGTTGTAGGGTCCTGGTGTGCTATGATCTGGCATT
GTCAACCCAGGAGTCGGGTCGTAGTTGCCTATCTTGTAGTGAGAGAATAT
CCAAACGCGCCTGGTGGTGAAGTACTTTATTTTTTTCATAGGCGTATTCT
AATAATCATGATCTCCACTATTCCTGTCGTGGGCCGTGCAGTAGTGTTCG
TTACCTTTCCCTCTCAAACTGCGCCACGTGTATGTCTGTAGCGTAGGAAC
TCCTCACACACTTTACAGGATGAGATGCGCTCTTTTTAATGATCAAATGT
AGATTGTACATGCTTTCTCTTGTATGTCGCTTATGATGCCGGTGAAAATG
AGTAGAGTGATACTGATCATGAACAATGAGGATATGACCACGTCTGAATA
ATTATTCAACACCTTGTATATATATCTTTTTCGAGAGAAAATATATATGA
ACACCCTGCAAGATGAAAATCTACTGAAAAATTAGTCCGAGGTGATACAC
CTTTACCTTACTACAACTTTGAAAAACATTTTGTACTTATATTTTATTTT
GTTCTGTTCAGGTGATTACGGCCGAGGGTATCAAAGTCGTACGGGCGCCT
GTGAAGGGGGAGGCGGGAGAGGCGCTCGTGAAGCCAGTGCCCGTTGCAGC
TTGAGAAATGTCTGACGGAGAGTGTTATCGTTGTCAAATACATATTTTCC
CTGGAATTGTTGTTATCAACGCTCTTACGAACAAGCGGAAAAACCATTAG
ATGTGGTTAATAATGCCATTTGTTCACGTTTCCCCCGGAATGGTAACATG
TGGAGCTGTGGCAGTTGAAGAGCAAGCAGCAAATAAATCCTGCTGAATAT
CATGAACGTTACCTTGGCGACGTTGGTACAGATGAAGCGAAACGATTGTC
GACATGTCTCTGTCCCATTTGGGGCGATGGTTCTGCAAGTGGGGAAGAAA
GGGGAAGTGGTAGGTAGTTGCAGTGTTGATCACTTGTCTTTATTCATAGT
TTGTCACAGACGTAATTTTATCGTCGGGTTATAACATCTTGACCTGCCCC
CAGAGTGCAATTTGGAGCTGAGGATGTTGTGTCCCCTTCGCGGAATTCAT
GATGAAAAAGATATTCTGTTGAATAACTTGTTGATATATGGGTTGAAAAA
AAAAGGTTCTTTTTTATCGGCTTTTTCCTCGATCAGTTTGATAGGAAAAG
AAACTTTGGCAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig137:4239..9402-

>mRNA_H-paniculata_contig137.2277.1 ID=mRNA_H-paniculata_contig137.2277.1|Name=mRNA_H-paniculata_contig137.2277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig137:4239..9402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACTTTGCTCGGCGTTGCTGGGGAAGGATGGACACTTTGCTCGGC
GTTGCTGGGGAAGGGTTCGTGGTGATAGCGGCTGACGCCCAGGTGGCCCG
TTCTATCCTTCTCTACCAGAGCAACGTGGACAAAATCAGCGCATTGAGCG
ATGATAAGCTGCTCGCCACCGGCGGCCCCCAGTCCGATTGCGTAGCCTTC
ACGGAGTACATATCCAAAAACATGACTCTCTACGAGCTGAATAACGATGT
CAAGCTCAATACCAAGGCGGCCGCCACTTTCATCAGGGGCGAGGTTCGTG
GTGATAGCGGCTGACGCCCAGGTGGCCCGTTCTATCCTTCTCTACCAGAG
CAACGTGGACAAAATCAGCGCATTGAGCGATGATAAGCTGCTCGCCACCG
GCGGCCCCCAGTCCGATTGCGTAGCCTTCACGGAGTACATATCCAAAAAC
ATGACTCTCTACGAGCTGAATAACGATGTCAAGCTCAATACCAAGGCGGC
CGCCACTTTCATCAGGGGCGAGCTGGCTAAAGCGCTCCGAAAGGGTCCAG
TGCAAACGTCAGTGCTGCTCGGGGGTGTGGACAAGAAAGCGGAGGGCAAG
GGTGAGGCGTCCTTGTACTGGATGGACTACCTCGGGACACAGACCAAGCT
GGCTAAAGCGCTCCGAAAGGGTCCAGTGCAAACGTCAGTGCTGCTCGGGG
GTGTGGACAAGAAAGCGGAGGGCAAGGGTGAGGCGTCCTTGTACTGGATG
GACTACCTCGGGACACAGACCAAGGTGCCATACGGCGCACATGGATACGG
CTCGAATTTCACGTCGTCAGTTATGGACCGGGATTACGTCAAAGGGCTTA
CGTTGGACGAGGCGATGGTGATCATTGACAAGTGCATCCATGAGCTACAC
ACGCGGTTTCTCATCGCTCAGACAAACTTCGTTATCAAGGTGCCATACGG
CGCACATGGATACGGCTCGAATTTCACGTCGTCAGTTATGGACCGGGATT
ACGTCAAAGGGCTTACGTTGGACGAGGCGATGGTGATCATTGACAAGTGC
ATCCATGAGCTACACACGCGGTTTCTCATCGCTCAGACAAACTTCGTTAT
CAAGGTGATTACGGCCGAGGGTATCAAAGTCGTACGGGCGCCTGTGAAGG
GGGAGGCGGGAGAGGCGCTCGTGAAGCCAGTGCCCGTTGCAGCTTGAGTG
ATTACGGCCGAGGGTATCAAAGTCGTACGGGCGCCTGTGAAGGGGGAGGC
GGGAGAGGCGCTCGTGAAGCCAGTGCCCGTTGCAGCTTGA
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