prot_H-paniculata_contig13661.2250.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13661.2250.1
Unique Nameprot_H-paniculata_contig13661.2250.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length937
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13661.2250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 797..936
e-value: 1.4E-13
score: 53.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 307..525
e-value: 2.8E-37
score: 130.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 164..306
e-value: 4.2E-34
score: 119.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 402..425
e-value: 0.82
score: 10.1
coord: 368..395
e-value: 5.6E-4
score: 20.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 367..399
e-value: 4.1E-5
score: 21.5
coord: 262..295
e-value: 2.8E-6
score: 25.2
coord: 331..364
e-value: 2.4E-6
score: 25.3
coord: 227..260
e-value: 9.4E-7
score: 26.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 283..342
e-value: 9.0E-7
score: 28.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 226..273
e-value: 3.7E-11
score: 43.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 900..934
score: 8.583
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 260..294
score: 12.112
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 295..328
score: 7.443
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 434..468
score: 6.456
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..429
score: 7.629
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 832..866
score: 8.298
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 225..259
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 329..363
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 9.482
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 197..305
coord: 306..475
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..936
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..11

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13661contigH-paniculata_contig13661:625..5971 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13661.2250.1mRNA_H-paniculata_contig13661.2250.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13661 625..6112 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13661.2250.1 ID=prot_H-paniculata_contig13661.2250.1|Name=mRNA_H-paniculata_contig13661.2250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=937bp
MLSGAAVSLAGRVARASNQSVSSRSRSTRRLLGDSSFRSLQSSARLLENL
QLDRAPGEVGLPYDHTTATSLAEERGGRKSGVIDYSKSKRADADGYGSYP
KRDWDRRPSLRKRDMGDRDNHNNDYYYKGSRRTAGVRGRGGGDDHPRNSM
SRNPDEEGEYDDGAERRTTKRRAPKRLPQHLRRKDSTTASVKFVEHITAM
GKKGQWFKAKRAYDEAMANPEVETTVYMFNATISALAKSGRWSEALAVVE
DMRASGHTPDRYTYNAIIQACVKGGEAERALALFDGMQYAGVMPDAFTYN
HLVTGCKDGAWQRALNLVQRMDEAGLEVSSVTFNGVIVACGNGGQLDKAL
EMLQVMRKRGITLTEGSFAAVISAHGKAGHWERAVALLDEMENDNLTANS
YCYNAAIQACLSAERWQDAVEVLRRALTDPEAVDRINFKQTLVSCARVGE
IELAHQLREEVEEVGRVVPRSTLTYIEYAERVFCKHGVQQATGNRKSAVT
ASTPTVLASSLKKGDLDEANDKDFSRPEQQRALTDEESETISFAATTEEA
VGAEQVEGGEEELNKYGNVWRGTASQFQGETPSSRGFPVARSPLEEELCA
AAAGSSSSSSSMSSSSDCGNLPLSEFPNLTAAVRSPLDEAQVGTAGTSWS
RAVSAEKTLSAGLTYERTLAAGEATTSPDSSAQVVANETLDQGGEGRIAH
FLASAATGGLGATEITAGGEKGSEHAQIPTCRAFDADEENASSTANTVAE
KKRSLRSDEDDDVVNDDDDGHYDDGRQNPPAASRNSPRVVWEPPYSSKKF
ELCAKHLTNEGDARGAVRFLRNAIDNPAAKVTMLMYEAGIKSAARGGLLD
EAMNVLGWIRKAGLRPSSTCLVWAIRACGRAPVVNVPLALALLKEMDPPD
IWGYSAALSTCARGGQWETNLSLLEAMPSAGLRANV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat