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Homology
BLAST of mRNA_H-paniculata_contig13554.2198.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.080e-27 Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 46 MGQGTVQGWVGLDPVEEASIVMKHKPHQKEDEMESCRLQCLAQRLLSTFREAVTVSLESTMLSAAPSDVDLDAGVQWLPDSALTPP 303
M QG +QGWVGLDPVEE I K + D +ESCRLQCLAQRLL+TFREAVTV LE TMLSAAP+DVD+DAGVQWLPDSAL PP
Sbjct: 1 MEQGVIQGWVGLDPVEEGVIAASPK---QGDVVESCRLQCLAQRLLTTFREAVTVGLEGTMLSAAPTDVDVDAGVQWLPDSALAPP 83
BLAST of mRNA_H-paniculata_contig13554.2198.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.460e-21 Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 1
Query: 1 QLLGSETARASLLYSMGQGTVQGWVGLDPVEEASIVMKHKPHQKEDEMESCRLQCLAQRLLSTFREAVTVSLESTMLSAAPS 246
QLLGSETARA+LL+SM QG +QGWVGLDPVEE + + K + D ES RLQCLAQRLL+TFREAVTV LE TMLSAAP+
Sbjct: 3248 QLLGSETARATLLFSMEQGVIQGWVGLDPVEEGVVAARLK---QGDVAESYRLQCLAQRLLTTFREAVTVGLEGTMLSAAPT 3326
BLAST of mRNA_H-paniculata_contig13554.2198.1 vs. uniprot
Match: A0A835Z2Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Z4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.700e-18 Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 1 QLLGSETARASLLYSMGQGTVQGWVGLDPVEEASIVMKHKPHQKEDEMESCRLQCLAQRLLSTFREAVTVSLESTMLSAAPSDVDLDAGVQWLPDSALT 297
QLL + +++S+++S+ G VQGWVGLDP P D RLQCLAQRLL+TF E +T++++ M+SAAP+DVD+ AGV WLP+SALT
Sbjct: 1444 QLLDEDVSKSSVIFSLEHGAVQGWVGLDP---------GAPPCAADAQRRRRLQCLAQRLLTTFEETITIAVQGVMISAAPTDVDVGAGVTWLPESALT 1533
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 1150 |
Cds size | 1149 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13554.2198.1 >prot_H-paniculata_contig13554.2198.1 ID=prot_H-paniculata_contig13554.2198.1|Name=mRNA_H-paniculata_contig13554.2198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=383bp
QLLGSETARASLLYSMGQGTVQGWVGLDPVEEASIVMKHKPHQKEDEMES CRLQCLAQRLLSTFREAVTVSLESTMLSAAPSDVDLDAGVQWLPDSALTP PQPRCPPPPPRSTAKTTTAKARTPKRTNRKPRVARSRSPVNNVPRVDDRK TTATSTAAAPAAIALAATTGRVRPSGGDLDGAVSQGVTAPAMAGAARMAE NGCSVAESSGASGQLYYEARSEEEQLENDRIRSHRLAREKAIDDDNDDDS IVFTPALTMLSSSDYSSPPSARRAPSPVFGTGEWAAAGGGGDGGENDSGF GGDSFDHLSHHSMTHGGTIPLEFDMQPADFSSLRVDINADTAVGSGGGGG GRDRDGRGRDGLSMRELFLHDGYSQGNCSGGGG back to topmRNA from alignment at H-paniculata_contig13554:1818..6747- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig13554.2198.1 ID=mRNA_H-paniculata_contig13554.2198.1|Name=mRNA_H-paniculata_contig13554.2198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4930bp|location=Sequence derived from alignment at H-paniculata_contig13554:1818..6747- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGCTCCTAGGATCCGAGACAGCGAGAGCCAGCCTTCTGTACTCCATGGG
TCAGGGCACCGTGCAGGGCTGGGTGGGCCTGGACCCCGTCGAAGAGGCGT
CAATAGTGATGAAGCACAAGCCTCACCAGAAGGTAAAGGACAAGTTGTGT
GGTATACTTTTGTGCAGAGATATCTGGGCCAACGAAAGACAATCAGTTGG
TGGTATGTCGACGATGTTGATCGTTGTATCAGCTGGTAGGACCTCCAAGT
TTCTTGCCGAATATTGAGTGCCGGAAAATAGTCGATGCAATGGCTTGTAC
TCAACGCTTCGGAAAATGGGATTCACAGAAAAAAAAGCGTGGTAAACCAA
TTTCCTGCTGTTGAGTTATGCCATGTTGATGTTTATACTGTCCGGAAGGC
CTTGAACAAATTGTGGCGTATATATTTCCAAACGTTGTGTACTTAGAGGC
GGTAGTGTATTAGAAATATCGCTTTTGTAACTTCGTTGCTTTTTTTATAA
TTCATTAAACACGCTATGGTGCAACTGCATCGGGAGTGCGAAGGCTTCAC
GTAAAAAATTGCACAGTTGAACCATATACGGAGGCCTCAAGTTACTCCCA
ATTGTCGAGTATTTTTACGTGGGGCTGCAGCACTCAAAAATCTGTGTGGC
CCTTGTGCGAGTGTCAATATCGCGTCCGCGACTGCGAATATTAAAAAATG
AGGAACATTTCGATTTTGCTTCGTATTCCAATTCTTAGGTTCTTTCCAAA
TTGGGTTGTACATCCTGATTTTCGAAATCCAATTCCAGCTATAATCTGTT
CTTCAAGAAACACGTTCTGTAATCACTTTTTTTGCTTCATTCTCCCTCGT
TCCTTTCTTCACCCGCCGAAGGTAAGTCACCACTAACATCGTCGGAAAAT
GTGTCATCGTCACCTTCACGGCGACACCGACTGCTTCACAGCAACTCTTC
AAACGCAACGCATGTATTGTGCACACTACGCTTTGCAAAATACCAAAAAA
ACGCACCCGGCGATATATATATATATATGATTTTTTTATTTTTTAAACGT
AATAAACGTTTTTTTAGTAGGATTGAAGGCTATGGCGGGAATCCATTCAC
GAGTTTTACCATTTTGTTAATTGCGATGGTCGAGGTGTGTACAAAGTCAG
CATATATTTGGCGATACCATGACAAATGAAGTCACGCCGACGTCACGCCC
CGAATGACCCACAGGTCTCGGAAACCTGTTTTTGCTCGCGGACGAGGGCG
AACTTTACCAGCTCATAGTATACATGCCGAGGGGTATGTGTGAGCGTTAG
CGTTATACTAGGGGTAGGTAGCAATAATGCGGGCGTTGTTTCCGATCGCG
CTTGCTGCACAACAAAGCGTCAACCATGAAAAACATACTCAAAGATCAAC
CTTGGCATTCGGGAAAGTGGCAAAGTGGAAACTTCACGAAGTCCCAAGCA
TGTCAGGTTTCATTCTCTTGGATAGCAGTAGTTTCTACCATCGGCGAGAA
TATCAATGCAAATCGACCCTGATTTGGAGACCAAGGAGGAAATGACGCTT
GTTTCTCCGGTCGATACTGTAATGAATGAGGCATGTTTTTTTGCCCTAGT
TTATACCGCGTAGAGTATTGGGCACGCTTGCTGCTCTCCTGGGTCGCGCA
TGTTAGTATATGCAGTAGCGCCAATCTGTGCTGTCCTGGGATGTAGGGAT
GTATGCGACATAGCGTTATGCGGGGGGATCGAACAGAGATGGGTTTGAGA
TTCAGGCAAATGAAGTCATAATAAATGAATGGATTGATGAATGAAGCAAC
GATTTCATTTATGTAATGGAAGAATGAAATGAGCTGACAGCGAATGGATG
CGTGGAGAAAGGAAGCCACGAAGGTACGGTTGAATGAGCCGTCAAATGGA
TGGATAAATCACTGAGTAGATCGCGGGATGACCAAGGAAGGAGCGAATAA
GTGAGTACGTGAATCAACAAGTGAATTGATGAATTGGTGACTACATCAGT
TCATGAGTGAATTAAGATTGTATGGAGTGAAACGATAGTTTACTGATGAG
TCAAAGGGTGAGTGATCGAATGGTTGAATTAACTAGATGAAGCTGAGGAG
AAATGAAGTTTGAATTTATAAACCTATCCGTGCGTTGAGTTAATAAATGA
ATTCATGCATAACTGAATGAAACATGTTTGTGCTTTGCACCCGTTCCTGT
GCACACGGGAAGGGGAGAGTTCTTAAGTCGAGACATCGCACATTGCCCTT
TCTCGTACAGTCGGCGGCCCTCTTCAAGGCAGGTATATGTCAGCCGAAAT
AAGCGCCTAGCACATAATGCGTTGTAGCCAGCTATTCGCTGTACGCATGG
TGCTGGATCGTCACCCGAACAAAGTACGAAGGCCACGGGAGAGTAGTGGT
TGCTCGTGTTGTTGCATTGTTGATCTAACATTGACAGTACGTAGCGCTTA
CTGCTGCCACAAGTGCTTGACTGCCATCGGCAAGGTCGGATTGTGAAGGA
CCGAGAAAATAACATGCATTTCTTGTAGCAAGGCAAAAAATATCCACCGA
GATACGATCCATGAACAACTTGAGATCCCAAAACAACAACGGCGTTTTTA
TCTCAACAAAGACACGCGGTGGAAGAAGCAGCATGAAGTGAAAAAAAAGG
GTTAAGATTACGTAGCATAGGCCTGTATGCAGCACATACGAAAGATCGCC
CCGCATGACCATTCGAATATAGCAAACGCACAAAAAACAATATTTTCCCA
CTGTAAGGCCGCACCGGCCATAAGTCGTGTCCTAAAAATTGACCGGCCTC
AATGGGGGCTACCCTCTGGGCTTTCTTCTGCGTATCAACAAGTCGAATAT
GTTCCCCCGGTTTCTTGTGCATAGTCCAGAACAGCATCTGCAGCACGGCG
CAATACTACTGAGGCTTGGTGTCCGCCATAAGAGTTCAAGAGATTACAAT
GCTGAAGTTTCAGGAATGCTCAGCAAAACTTGCGTGTTTAAAGCTTTTCG
TCAGCGGCAGTGTGCCCTTGCCAAGAAGCGTCGATGGAGCCATACCGTAA
CAACACCCTTTGAATCGCACTCCCTGGTATATTTTTTCTAATTCAACTTT
TCTCCCCAATGGAAGCGCTCATGACATCGATAGCGGTACCGTTGAAAAGA
TCCCGTTGACGTATTTCGATAGGTTCGTTTTTTCCATTGTGCAGACTCTT
GCTTGCTTCTTGAAAAAAGCGGGTTTGGAAAATAGTATCAGGGGGTGCGA
TATCAAACCGTGTTACGGCGTAACGCTGGATGCACCGTCCGGAGATCGCG
AGTTATCGTCCCCGACAGGTTAAGGACGACATGCGACCTTAACGCGCGGT
CGGGTGTGGCTCACTTTTTTTTTCTTATTTATTTCGCCGCTCGCCTGGTG
TATACGCGTATGGATGTGCGCCTTCGTACTTTATGTTTTCCGTATCGATT
TTGACACGAATGAAAATAGGAGGATGAGATGGAGAGCTGTAGGTTGCAGT
GCCTGGCGCAGCGCCTCCTATCGACGTTCCGCGAGGCTGTGACCGTGAGC
TTAGAGAGCACCATGCTCTCTGCCGCCCCGTCTGGTGAGTCTTACTGACA
GCACCCTAAGTGCATATTGTATGTTGGATGATGCCATAGATGAAAATATG
ACCGAAAAAAACGCATGGTGGCGTCTCGAAGACTCGTTGTTCCCCACTTT
AATAATGGTATCATGATGGTTAGGACGCCACCTGAATGTTCTCATTGTGC
TAAATAATGCTCAGTCAGTATGTACACATACATTTCGGACACAGCGAAAA
CCAGGTGGCTACAGTGGTTAATGAGGATCTGTAAGTGATATCATATGGAA
GGTACATCACGATGTCTATGCTCCTTGTACATAGCGAGAGGTGCGGATTC
GCCCCCCTTCCTTTCCTGCCCCCGCGCATGCTCCCCTGACCCTTGCGCCG
GGATATCCCTTTGGCACATGGAAATTTACATACTACCTGCCGCCTGCCCC
CATTCGTTCGTCGCACCATGACCTCAGACGTCGACCTGGACGCCGGGGTT
CAGTGGCTACCGGATTCCGCGCTCACTCCGCCCCAGCCTCGTTGTCCTCC
TCCTCCTCCTCGTTCCACTGCCAAGACCACCACGGCGAAGGCACGAACGC
CAAAGCGGACTAATCGAAAGCCGAGAGTTGCACGTTCGAGATCTCCTGTT
AACAACGTCCCTCGTGTCGACGACCGCAAAACGACAGCTACATCGACGGC
GGCAGCGCCCGCCGCCATCGCCCTCGCTGCCACCACCGGGCGAGTCAGGC
CATCGGGCGGGGACTTGGACGGGGCGGTGTCTCAGGGGGTAACGGCACCG
GCGATGGCTGGTGCAGCGAGAATGGCGGAGAACGGTTGTTCGGTCGCCGA
GTCTTCCGGTGCGTCTGGTCAGCTGTACTACGAGGCGCGCTCGGAAGAGG
AGCAGTTGGAAAATGACCGCATAAGATCGCACAGGTTGGCACGGGAGAAG
GCGATAGATGATGACAACGATGATGATTCTATAGTCTTTACACCAGCACT
CACGATGCTGAGCTCTTCAGACTACTCCTCACCCCCCTCGGCAAGAAGAG
CGCCGTCGCCTGTGTTCGGTACCGGTGAATGGGCAGCGGCTGGCGGGGGT
GGGGACGGAGGCGAAAACGACAGCGGCTTTGGTGGAGATAGTTTTGACCA
CCTCTCCCACCACTCAATGACGCACGGCGGGACAATCCCTCTAGAATTTG
ATATGCAGCCCGCTGATTTTTCTTCTCTACGGGTAGATATCAATGCAGAT
ACCGCTGTCGGCAGTGGCGGCGGCGGGGGTGGCCGTGACCGTGACGGTCG
CGGCCGTGATGGTCTAAGTATGCGGGAGTTGTTTTTGCATGATGGTTATT
CGCAAGGCAACTGCAGCGGCGGGGGCGGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig13554:1818..6747- >mRNA_H-paniculata_contig13554.2198.1 ID=mRNA_H-paniculata_contig13554.2198.1|Name=mRNA_H-paniculata_contig13554.2198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2298bp|location=Sequence derived from alignment at H-paniculata_contig13554:1818..6747- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGCTCCTAGGATCCGAGACAGCGAGAGCCAGCCTTCTGTACTCCATGGG TCAGGGCACCGTGCAGGGCTGGGTGGGCCTGGACCCCGTCGAAGAGGCGT CAATAGTGATGAAGCACAAGCCTCACCAGAAGCAGCTCCTAGGATCCGAG ACAGCGAGAGCCAGCCTTCTGTACTCCATGGGTCAGGGCACCGTGCAGGG CTGGGTGGGCCTGGACCCCGTCGAAGAGGCGTCAATAGTGATGAAGCACA AGCCTCACCAGAAGGAGGATGAGATGGAGAGCTGTAGGTTGCAGTGCCTG GCGCAGCGCCTCCTATCGACGTTCCGCGAGGCTGTGACCGTGAGCTTAGA GAGCACCATGCTCTCTGCCGCCCCGTCTGGAGGATGAGATGGAGAGCTGT AGGTTGCAGTGCCTGGCGCAGCGCCTCCTATCGACGTTCCGCGAGGCTGT GACCGTGAGCTTAGAGAGCACCATGCTCTCTGCCGCCCCGTCTGACGTCG ACCTGGACGCCGGGGTTCAGTGGCTACCGGATTCCGCGCTCACTCCGCCC CAGCCTCGTTGTCCTCCTCCTCCTCCTCGTTCCACTGCCAAGACCACCAC GGCGAAGGCACGAACGCCAAAGCGGACTAATCGAAAGCCGAGAGTTGCAC GTTCGAGATCTCCTGTTAACAACGTCCCTCGTGTCGACGACCGCAAAACG ACAGCTACATCGACGGCGGCAGCGCCCGCCGCCATCGCCCTCGCTGCCAC CACCGGGCGAGTCAGGCCATCGGGCGGGGACTTGGACGGGGCGGTGTCTC AGGGGGTAACGGCACCGGCGATGGCTGGTGCAGCGAGAATGGCGGAGAAC GGTTGTTCGGTCGCCGAGTCTTCCGGTGCGTCTGGTCAGCTGTACTACGA GGCGCGCTCGGAAGAGGAGCAGTTGGAAAATGACCGCATAAGATCGCACA GGTTGGCACGGGAGAAGGCGATAGATGATGACAACGATGATGATTCTATA GTCTTTACACCAGCACTCACGATGCTGAGCTCTTCAGACTACTCCTCACC CCCCTCGGCAAGAAGAGCGCCGTCGCCTGTGTTCGGTACCGGTGAATGGG CAGCGGCTGGCGGGGGTGGGGACGGAGGCGAAAACGACAGCGGCTTTGGT GGAGATAGTTTTGACCACCTCTCCCACCACTCAATGACGCACGGCGGGAC AATCCCTCTAGAATTTGATATGCAGCCCGCTGATTTTTCTTCTCTACGGG TAGATATCAATGCAGATACCGCTGTCGGCAGTGGCGGCGGCGGGGGTGGC CGTGACCGTGACGGTCGCGGCCGTGATGGTCTAAGTATGCGGGAGTTGTT TTTGCATGATGGTTATTCGCAAGGCAACTGCAGCGGCGGGGGCGGGACGT CGACCTGGACGCCGGGGTTCAGTGGCTACCGGATTCCGCGCTCACTCCGC CCCAGCCTCGTTGTCCTCCTCCTCCTCCTCGTTCCACTGCCAAGACCACC ACGGCGAAGGCACGAACGCCAAAGCGGACTAATCGAAAGCCGAGAGTTGC ACGTTCGAGATCTCCTGTTAACAACGTCCCTCGTGTCGACGACCGCAAAA CGACAGCTACATCGACGGCGGCAGCGCCCGCCGCCATCGCCCTCGCTGCC ACCACCGGGCGAGTCAGGCCATCGGGCGGGGACTTGGACGGGGCGGTGTC TCAGGGGGTAACGGCACCGGCGATGGCTGGTGCAGCGAGAATGGCGGAGA ACGGTTGTTCGGTCGCCGAGTCTTCCGGTGCGTCTGGTCAGCTGTACTAC GAGGCGCGCTCGGAAGAGGAGCAGTTGGAAAATGACCGCATAAGATCGCA CAGGTTGGCACGGGAGAAGGCGATAGATGATGACAACGATGATGATTCTA TAGTCTTTACACCAGCACTCACGATGCTGAGCTCTTCAGACTACTCCTCA CCCCCCTCGGCAAGAAGAGCGCCGTCGCCTGTGTTCGGTACCGGTGAATG GGCAGCGGCTGGCGGGGGTGGGGACGGAGGCGAAAACGACAGCGGCTTTG GTGGAGATAGTTTTGACCACCTCTCCCACCACTCAATGACGCACGGCGGG ACAATCCCTCTAGAATTTGATATGCAGCCCGCTGATTTTTCTTCTCTACG GGTAGATATCAATGCAGATACCGCTGTCGGCAGTGGCGGCGGCGGGGGTG GCCGTGACCGTGACGGTCGCGGCCGTGATGGTCTAAGTATGCGGGAGTTG TTTTTGCATGATGGTTATTCGCAAGGCAACTGCAGCGGCGGGGGCGGG back to top
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