mRNA_H-paniculata_contig1355.2195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1355.2195.1
Unique NamemRNA_H-paniculata_contig1355.2195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: D7FYU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU6_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 7.310e-51
Identity = 80/124 (64.52%), Postives = 105/124 (84.68%), Query Frame = 1 
Query:   82 PAAAAA---KKRSMKVQFVQETPGGFITVVEVKNPKGMTQHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQYCKDEPNL 444
            PAAAAA   KKRS+ VQFVQETP G+I+VV+VKN K  T HRIV+ K+Q+  YSE+AGK+V V DL+ YV+K+M+DKG+ LDNTEGMI+++VFPVNYFTLKQL+Y+H+DV+EK++  CK+ P+L
Sbjct:    8 PAAAAAPIKKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVALCKEAPDL 131
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: A0A835YV54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV54_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.300e-24
Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   91 AAAKKRSMKVQFVQETPGGFITVVEVKNPKGMTQHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQ 420
            AA     +K+  +QET GGFI+ +EV   + +T H+I++ K  ++  SE  GK V V+ ++ ++V+FM+DK M LDNTEGMID+ VFPVNYFT  QL  +H ++ +KL +
Sbjct:   61 AAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 170
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: A0A7S1K9Y0_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9Y0_9ALVE)

HSP 1 Score: 90.1 bits (222), Expect = 4.390e-19
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:  112 MKVQFVQETPGGFITVVEVKNPKGMT-QHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQYCKDE 435
            +KV++V E  GG+++ V +    G T +H + VG          A +EV  + LV Y+ KFM+D+ MS+DNTEGMIDS+VFPVNYF+  Q+ Y HED  ++L    +++
Sbjct:  146 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVENQ 254
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: A0A0G4H3W5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3W5_VITBC)

HSP 1 Score: 90.1 bits (222), Expect = 4.020e-18
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:  112 MKVQFVQETPGGFITVVEVKNPKGMT-QHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQYCKDE 435
            +KV++V E  GG+++ V +    G T +H + VG          A +EV  + LV Y+ KFM+D+ MS+DNTEGMIDS+VFPVNYF+  Q+ Y HED  ++L    +++
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVENQ 573
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: A0A1X6NLW3_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLW3_PORUM)

HSP 1 Score: 84.0 bits (206), Expect = 2.420e-17
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:   88 AAAAKKRSMKVQFVQETPGGFITVVEVKN--PKGMTQHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQYCKDE 435
            AAAA +R   ++ V ET GG+I  +   N   K  T+H I++ K+ +   +   G  VA + L  Y++ ++M  G S  NTEGMI+S +FPVNYF ++Q  YY+ + + K+I+    +
Sbjct:   65 AAAAVQRFSDIKSVNETGGGWIVQLVATNGAKKPPTRHTIIISKEAMTRMTA-DGTPVAPEQLAKYIMSYLMTSGFSTTNTEGMIESDIFPVNYFAIRQFLYYYPEAEAKIIEMINSQ 181
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BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Match: A0A7S2SS57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS57_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-5
Identity = 40/141 (28.37%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:   55 WLSM-VEKAAPAAAAAKKRS-------------MKVQFVQETPGGFITVVEVKNPK-GMTQ--HRIVVGKDQVEHYSEIA--GKEVAVKDLVMYVVKFMMDKGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQ 420
            W+SM V + APAA+ + +R              + +  V ET GGFI  V++++   G ++  H + + KD++   + +   G E         V+KF+     S+ NTEG +D A FP+NYF+++Q+ ++  +    L++
Sbjct:   70 WVSMSVAEPAPAASPSPQRGGSRRSSRANRQSQVFIDDVVETRGGFI--VDLRHTSFGSSESWHSLTMSKDKLSELTALLPEGMEARPDMFAAAVIKFLASNLPSVANTEGTLDPAQFPINYFSVRQVWHFFPEATPALVE 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1355.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FYU6_ECTSI7.310e-5164.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV54_9STRA1.300e-2445.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1K9Y0_9ALVE4.390e-1942.20Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H3W5_VITBC4.020e-1842.20Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1X6NLW3_PORUM2.420e-1736.44Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A7S2SS57_9STRA1.190e-528.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1355contigH-paniculata_contig1355:24141..25728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002530.1
Exons4
Model size459
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1355.2195.1prot_H-paniculata_contig1355.2195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1355 24141..25728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.0939002-CDS-H-paniculata_contig1355:24140..242211622929072.0939002-CDS-H-paniculata_contig1355:24140..24221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 24141..24221 -
1691480720.9766877-CDS-H-paniculata_contig1355:24140..242211691480720.9766877-CDS-H-paniculata_contig1355:24140..24221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 24141..24221 -
1622929072.110092-CDS-H-paniculata_contig1355:24468..246421622929072.110092-CDS-H-paniculata_contig1355:24468..24642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 24469..24642 -
1691480720.9890025-CDS-H-paniculata_contig1355:24468..246421691480720.9890025-CDS-H-paniculata_contig1355:24468..24642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 24469..24642 -
1622929072.124377-CDS-H-paniculata_contig1355:25190..252961622929072.124377-CDS-H-paniculata_contig1355:25190..25296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 25191..25296 -
1691480720.9990482-CDS-H-paniculata_contig1355:25190..252961691480720.9990482-CDS-H-paniculata_contig1355:25190..25296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 25191..25296 -
1622929072.1451194-CDS-H-paniculata_contig1355:25630..257281622929072.1451194-CDS-H-paniculata_contig1355:25630..25728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 25631..25728 -
1691480721.0076692-CDS-H-paniculata_contig1355:25630..257281691480721.0076692-CDS-H-paniculata_contig1355:25630..25728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1355 25631..25728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1355.2195.1

>prot_H-paniculata_contig1355.2195.1 ID=prot_H-paniculata_contig1355.2195.1|Name=mRNA_H-paniculata_contig1355.2195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
VAGPVKLSSRQAGPQRSRWLSMVEKAAPAAAAAKKRSMKVQFVQETPGGF
ITVVEVKNPKGMTQHRIVVGKDQVEHYSEIAGKEVAVKDLVMYVVKFMMD
KGMSLDNTEGMIDSAVFPVNYFTLKQLTYYHEDVDEKLIQYCKDEPNLLG
EL*
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mRNA from alignment at H-paniculata_contig1355:24141..25728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1355.2195.1 ID=mRNA_H-paniculata_contig1355.2195.1|Name=mRNA_H-paniculata_contig1355.2195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-paniculata_contig1355:24141..25728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGGCCCTGTGAAACTCAGCTCGCGGCAAGCCGGGCCGCAACGAAG
CCGATGGTTGTCCATGGTGGAGAAGGCAGCTCCTGCCGCTGCAGCAGCGT
GAGTCGGGGTATTGTAAATGGTAGTAAATTCTCGTCGTATGACTAAAGGA
TCGACCGGAAACTATACGCATCGGCACTGGCCTTCATAATACTGAAATCG
TTTCGTCAGATATACTGTAGCGGTTCGCTGAGAGCCTTTTACCTGTTGTT
CAGCTTGTTCGGTCTCATAACTGCTTTTACCACCAAGCATCCGATCCGCT
GCCCAACATGCACAGAAGCTCCGAATGGTCCAACAAGGTACAGATTTAAC
AGTTTTAATATACCTTTGGCATTCCAACACAGATGATCCGAAGCGCTGCC
TCCCCTCCCCCTCCCCATATTGCTCGTTTCAGAAAGAAGCGGTCAATGAA
AGTGCAATTCGTCCAGGAGACTCCTGGAGGATTTATCACGGTGGTCGAGG
TCAAAAATCCCAAGGGAATGACGCAGCATCGTATCGTGGTGAGGCACCTT
GCTGAGTGATGAGGACTTGCACTTTCTATTACCACAGCATGTCCCTACAC
CATGCTGAGCGCTTCAATATTTCCAAGACATGTCCGAATCTTGTGTTTCT
TTGGTATGGAGGAGTGACACTGTTAACGTGGAATTTTTTGGCCCAGGAGT
TGCAGCTAGAATGAAAATAACTTGGCCAGTCCTCGGATGATGCTGACAGT
TATTTTGAACTTGGGGGTCAATTTGACTTGTCTTTTGGAGCTGGAGAAAA
TCCCGTTGCACGTGTATCACCCCCTTTTGTACGGATTTATCCTCCCCCAG
CCCCCTCCCTCCCCTCTTGGTTTTAAAACGTGAACTCTGCATGCACACAT
GAAAAGTTTAAAATGCAGTCACTTCAACCGTAATGTTTCCTTTCTGTCCA
GTTGGAGGTATCGTGTGTTGACCAGCAGTTTCCAAGCACGTCTGTGTCGA
ATGCTTTCATTACTCAGCGCATGCCTGTCATTCACACGCGTATTCTCTCG
ATGGCAATAATGCATCCATTTTTGTACTTGAGTCAGGTGGGCAAAGATCA
AGTCGAACACTACTCCGAGATTGCTGGAAAAGAGGTGGCGGTCAAGGACT
TGGTTATGTATGTTGTCAAGTTCATGATGGACAAAGGGATGTCCCTGGAT
AATACCGAGGGAATGATAGACTCCGCTGTGTTTCCGGTGAATTACTTCAC
TCTCAAGCAGGTATGAGGATTTCCGGCAGCGTCGTTTGGCGAGCTTCATT
CACCATCATCAACGATATCGTCATCGGCACACATGATATTCACGTAGTTT
ACGTTTGGTAGGTGTGTCAAGAGGGATGTTGGAGGTATTACCGCAGGATA
ATGCATCATTTTTTGTTTCACGCAACCGAAACGATAATTGCAGGCTGGTG
TATTCTCAAGTAAATTTTTCGTTCCTCTCCTTACGTGCTCCTGCTGTTGT
TGTGCAGCTAACATACTATCATGAAGACGTGGACGAGAAGCTCATACAGT
ACTGCAAGGACGAGCCGAATTTATTGGGGGAGTTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1355:24141..25728-

>mRNA_H-paniculata_contig1355.2195.1 ID=mRNA_H-paniculata_contig1355.2195.1|Name=mRNA_H-paniculata_contig1355.2195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig1355:24141..25728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGGCCCTGTGAAACTCAGCTCGCGGCAAGCCGGGCCGCAACGAAG
CCGATGGTTGTCCATGGTGGAGAAGGCAGCTCCTGCCGCTGCAGCAGCGT
TGCTGGCCCTGTGAAACTCAGCTCGCGGCAAGCCGGGCCGCAACGAAGCC
GATGGTTGTCCATGGTGGAGAAGGCAGCTCCTGCCGCTGCAGCAGCAAAG
AAGCGGTCAATGAAAGTGCAATTCGTCCAGGAGACTCCTGGAGGATTTAT
CACGGTGGTCGAGGTCAAAAATCCCAAGGGAATGACGCAGCATCGTATCG
TGAAAGAAGCGGTCAATGAAAGTGCAATTCGTCCAGGAGACTCCTGGAGG
ATTTATCACGGTGGTCGAGGTCAAAAATCCCAAGGGAATGACGCAGCATC
GTATCGTGGTGGGCAAAGATCAAGTCGAACACTACTCCGAGATTGCTGGA
AAAGAGGTGGCGGTCAAGGACTTGGTTATGTATGTTGTCAAGTTCATGAT
GGACAAAGGGATGTCCCTGGATAATACCGAGGGAATGATAGACTCCGCTG
TGTTTCCGGTGAATTACTTCACTCTCAAGCAGGTGGGCAAAGATCAAGTC
GAACACTACTCCGAGATTGCTGGAAAAGAGGTGGCGGTCAAGGACTTGGT
TATGTATGTTGTCAAGTTCATGATGGACAAAGGGATGTCCCTGGATAATA
CCGAGGGAATGATAGACTCCGCTGTGTTTCCGGTGAATTACTTCACTCTC
AAGCAGCTAACATACTATCATGAAGACGTGGACGAGAAGCTCATACAGTA
CTGCAAGGACGAGCCGAATTTATTGGGGGAGTTGTGACTAACATACTATC
ATGAAGACGTGGACGAGAAGCTCATACAGTACTGCAAGGACGAGCCGAAT
TTATTGGGGGAGTTGTGA
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