mRNA_H-paniculata_contig1353.2185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1353.2185.1
Unique NamemRNA_H-paniculata_contig1353.2185.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.360e-68
Identity = 166/324 (51.23%), Postives = 202/324 (62.35%), Query Frame = 1 
Query:   28 ERWQQHAQAVAA----GXXXXXXXXXXXXXXXXXXXXDAKREQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIKITGAAPPEYLPAPV-----VEESEEDASTQEVGDEIIASPENVEIGAVSATVQEQEVEGVEDQA--------PEED---AEHGVSTVGAGAPTTPRATAALGLTGAMVVYGVGDIVEEDAGPRLRRGDEVLLRVSQENVTGKKKGVEISLLKTSKEKRKEEQLQKV 939
            ERWQ+HAQA++      XXXXXX                +REQG VC IKE+FGFVRC+DR GDLFFHLTEAP +IN+GDEVDF +G G RSGKD AL+L++LP GTV ++ +L+  F+GVIERDIRS   +MPS+ RA MMGRSR  + QQ EGLIKITGAAPPE  PA        E   + A   E GD           G  ++   E  V GV+D A        PE +   A        AG     RA A LGL GAMV Y V D +EEDAG R RRGDEV  +VSQE VTG+K+ VE+ L++T++EKR+ EQLQK+
Sbjct:  118 ERWQKHAQALSGRXXXXXXXXXXAQQRHGQQNQRPEAGGEREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNRSGKDCALKLNLLPPGTVSSEIILDASFLGVIERDIRSHPSSMPSTHRANMMGRSRPQESQQSEGLIKITGAAPPEDPPAASDTTAPPEREVQPADATEGGD-----------GTDTSFETEAAVAGVDDAAGTSAPAATPETEEAVAVRSTQPAPAGDGKGDRA-APLGLQGAMVTYLVTDSLEEDAGSRFRRGDEVRFKVSQEKVTGRKRAVELVLVRTNREKREGEQLQKL 429
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: D7FPP6_ECTSI (CSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP6_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 7.730e-67
Identity = 158/321 (49.22%), Postives = 195/321 (60.75%), Query Frame = 1 
Query:   28 ERWQQHAQAVAA---GXXXXXXXXXXXXXXXXXXXXDAKREQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIKITGAAPPEYLPAPVV----EESEEDASTQEVGDEIIASPENVEIGAVSATVQEQEVEGVEDQAPEEDAEHGVSTVGAGAPTTPRATAA----------LGLTGAMVVYGVGDIVEEDAGPRLRRGDEVLLRVSQENVTGKKKGVEISLLKTSKEKRKEEQLQKV 939
            ERWQ+HAQA++     XXXX                  +REQG VC IKE+FGFVRC+DR GDLFFHLTEAP +IN+GDEVDF +G G RSGKD AL+L++LP GTV ++ +L+  F+GVIERDIRS+  +MPS+ RA MMGRSR  ++QQ EGLIKITGAAPPE   A       E   + A   E GD                T  E  V GV+D A               A  + + T A          LGL GAMV Y V D +EEDAG R RRGDEV  +VSQE VTG+K+ VE+ L++T++EKR+ EQLQK+
Sbjct:  120 ERWQKHAQALSGRSXXXXXXYNAQQRHGQQNQRPEASGEREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNRSGKDCALKLNLLPPGTVSSEIILDASFLGVIERDIRSYPSSMPSTHRANMMGRSRPQEYQQSEGLIKITGAAPPEEPAADDTTAPPEGEVQPADATEGGDGTXXXXXXXXXXXSPET--EAAVAGVDDAAGTSAPAXXXXXXXXVAVRSTQPTLAGDDKGDTAAPLGLQGAMVTYLVTDGLEEDAGSRFRRGDEVRFKVSQEKVTGRKRAVEVVLVRTNREKREGEQLQKL 438
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A7S2SQY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.870e-19
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:  136 REQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRS 399
            RE G V  +KE FGF+RCV R GDLFFH++EAP+DI +GDEV+F V T  R G+  A  +  LP GTV+ + VLE  +VG+++R IR+
Sbjct:   26 RECGKVKSLKEKFGFIRCVGRPGDLFFHISEAPRDIEVGDEVEFAVDTS-RDGRLCAKAIDTLPRGTVQFEDVLETSYVGIVDRGIRN 112
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: K3WP78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP78_GLOUD)

HSP 1 Score: 99.4 bits (246), Expect = 1.090e-18
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  139 EQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIKITGA 501
            E+G V  IKE+FGFV CVDR GDLFFH+TEAP D+ + DEV+F +    RS KD A QL  LP GT+  + + E  F G++ R +RS      SS  +      +    ++  GLI+I  A
Sbjct:  174 EKGIVVSIKESFGFVSCVDREGDLFFHITEAPVDVQLQDEVEFRIKYNQRSAKDIACQLVTLPKGTIVLEDISEEFFEGIVTRGVRS-----SSSYSSXXYDARQQQQREETHGLIEIAKA 289
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A5D6XH35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH35_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.490e-18
Identity = 94/275 (34.18%), Postives = 129/275 (46.91%), Query Frame = 1 
Query:  136 REQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRS---FHPTMPSSQRAQMMGRSRAHDHQQPEGLIKITGAAPPEYLPAPVVEESEEDASTQE-VGDEIIASPENVEIGAVSATVQEQEVEGVEDQAPEEDAEHGVSTVGAGAPTTPRATAALGLTGAMVVYGVGDIVEEDAGPRLRR--------GDEVLLRVSQENVTGKKKGVEISLLKTSKEKRKEE 924
            +EQG V  IKE+FGFV C+DR GDLFFH+TEAP D+ + DEV+F V    RS ++ A QL  LP G++  + V +    GV+ R +RS   +H    S  R Q      A       GLI++        LP   V     DA+T+E V D   A   +   GA  +  +   V    D   +E      + VG    +   ATAA            GD   E   P+ RR        GDEV  RV+    TG K+ VE+S+  ++K K ++E
Sbjct:  148 KEQGVVIAIKESFGFVSCMDRDGDLFFHITEAPVDVQLHDEVEFRVKFNQRSSREMACQLVALPKGSIVQEDVADEFLDGVVTRALRSAPNYHNA--SDSRPQTQRDDAAF------GLIEVA------TLPDVAV-----DAATRESVADS--ADDSDSATGAAKSAARRNTVRFNADSVAQETTTAAAAAVGDAGDSDNAATAA------------GD---ESGRPKPRRKKAAVPHVGDEVRFRVATHRKTGVKRAVELSVTASAKAKLEKE 386
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A836CJ69_9STRA (CSD_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ69_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.610e-18
Identity = 79/255 (30.98%), Postives = 130/255 (50.98%), Query Frame = 1 
Query:  190 VDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDIRSFHPTMPSSQRAQMMGRSRAHDHQQPE----GLIKITGAAPPEYLPAPVVEESEEDASTQEVGDEIIASPENVEIGAVSATVQEQEVEGVEDQAPEEDAEHGVSTVGAGAPTTPRATAALGLTGAMVVYGVGDIVEEDAGPRLRRGDEVLLRVSQENVTGKKKGVEISLLKTSKEKRKEEQLQKVR 942
            V+R GDLFFHL+EAP+D+ +GDE +FVVG   RS ++ A++L  L  GTVK + V+ G + G+++RDIR   P  PS+ +A+     RA D ++ E    GLI+IT A       AP  EE E +A   E  DE +   E +     S  +                                     + +  A  + G G++ +      L RGDEV ++++++ VTG+ K V   L+ +++ +R++E+L++++
Sbjct:   24 VERAGDLFFHLSEAPRDVQVGDEFEFVVGINERSNRECAVRLEKLAPGTVKFERVIPGWWAGIVDRDIRV--PGGPSAYQARKSHPDRAADFRRIETAYDGLIRITSAV----AAAPAAEEKEGEA--MEGQDEEVVEQERIVNRMASFAL-------------------------------------VCVLPAPALDGSGEVDQ-----LLSRGDEVEVQLAEDKVTGRLKTVAARLVMSARIRREQEELKRLK 228
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: G4Z9V3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z9V3_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 1.510e-17
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:  139 EQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDI-RSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIKITGAAPPEYLPAPVVEESEEDASTQEVGDEIIASP 594
            +QG+V  IKENFGFV C++R GDLFFH++EAP D+ + DEV+F V    RS K+ A QL  LP GT+K + V + LF GV+ + + R  H       R     R      ++  GLI++  A  PE       EE+      ++  +E  ASP
Sbjct:  166 KQGFVVSIKENFGFVSCLERDGDLFFHISEAPVDVQLQDEVEFRVKYNQRSDKEMACQLVALPKGTIKVEEVSDELFDGVVTKSLPRGGH----GGGRGFFNNRDDDRHQREEHGLIEVKKA--PEQGEDAKAEETAATGDEEQTQEEADASP 312
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A329RLV6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RLV6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.410e-17
Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:    1 EEGGLPMASERWQQHAQAVAAGXXXXXXXXXXXXXXXXXXXXDAKREQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDI 393
            E GG    S RW  +A     G                    D   EQG++  IKENFGFV C+ R GDLFFH++EAP D+ + DEV+F V    RS K+ A QL  LP GT+K + V E  + GV+ + +
Sbjct:  149 EGGGRADTSSRWGHNADRRGGGAGR-----------------DMPMEQGFIVSIKENFGFVSCMGRDGDLFFHISEAPVDVQLQDEVEFRVKYNQRSDKEMACQLVALPKGTIKVEEVSEEFYDGVVTKSL 262
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A3M6V819_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V819_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.560e-16
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:  139 EQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDI--------RSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIKI 492
            EQG+V  IKENFGFV C++R GDLFFH++EAP  + + DEV+F V    RS K+ A QL  LP GT+K + V + L  G++ + +        R F+      +          H H++  GLI++
Sbjct:  204 EQGFVVSIKENFGFVSCMERDGDLFFHISEAPVGVQLQDEVEFRVSFNQRSDKEMACQLVALPKGTIKVEEVADELLDGIVTKSLPRGGHGNGRGFYNNRDDDR----------HQHREEYGLIEV 319
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BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Match: A0A662X4D1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4D1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.870e-16
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:  139 EQGYVCFIKENFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLHVLPTGTVKTDTVLEGLFVGVIERDI-RSFHPTMPSSQRAQMMGRSRAHDHQQPEGLIK 489
            E+G+V  IKENFGFV C++R GDLFFH+TEAP D+ + DEV+F V    RS K+ A QL  LP GT+  + V E  F GV+ + + R  + +  S  R      +R     +P GLI+
Sbjct:  293 ERGFVVSIKENFGFVSCMEREGDLFFHITEAPVDVQLQDEVEFRVKYNQRSDKEMACQLVGLPKGTIVVEDVSEEFFDGVVTKSLPRGGNNSYNSYNRDD----TRHSQRDEPHGLIE 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1353.2185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q3_9PHAE1.360e-6851.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP6_ECTSI7.730e-6749.22CSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2SQY9_9STRA4.870e-1953.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K3WP78_GLOUD1.090e-1843.80Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XH35_9STRA2.490e-1834.18Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A836CJ69_9STRA5.610e-1830.98CSD_1 domain-containing protein n=1 Tax=Tribonema ... [more]
G4Z9V3_PHYSP1.510e-1739.22Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A329RLV6_9STRA6.410e-1739.69Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3M6V819_9STRA1.560e-1638.89Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662X4D1_9STRA2.870e-1644.07Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1353contigH-paniculata_contig1353:14655..19294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue3.1e-62
Seed eggNOG ortholog2880.D7FPP6
Preferred nameCSDE1
KEGG koko:K19721
KEGG Pathwayko04974,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000956,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009047,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0040029,GO:0042714,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046700,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070937,GO:0070966,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, no-go decay
EggNOG OGs28K4H@1,2QSJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons7
Model size1201
Cds size1056
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.6057336-UTR-H-paniculata_contig1353:14654..147811622929070.6057336-UTR-H-paniculata_contig1353:14654..14781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 14655..14781 -
1691480720.2866406-UTR-H-paniculata_contig1353:14654..147811691480720.2866406-UTR-H-paniculata_contig1353:14654..14781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 14655..14781 -
1622929070.7440677-UTR-H-paniculata_contig1353:19276..192941622929070.7440677-UTR-H-paniculata_contig1353:19276..19294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 19277..19294 -
1691480720.3651297-UTR-H-paniculata_contig1353:19276..192941691480720.3651297-UTR-H-paniculata_contig1353:19276..19294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 19277..19294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.6273398-CDS-H-paniculata_contig1353:14781..150101622929070.6273398-CDS-H-paniculata_contig1353:14781..15010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 14782..15010 -
1691480720.2969103-CDS-H-paniculata_contig1353:14781..150101691480720.2969103-CDS-H-paniculata_contig1353:14781..15010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 14782..15010 -
1622929070.6479757-CDS-H-paniculata_contig1353:15464..156461622929070.6479757-CDS-H-paniculata_contig1353:15464..15646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 15465..15646 -
1691480720.3069146-CDS-H-paniculata_contig1353:15464..156461691480720.3069146-CDS-H-paniculata_contig1353:15464..15646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 15465..15646 -
1622929070.6640263-CDS-H-paniculata_contig1353:16046..162201622929070.6640263-CDS-H-paniculata_contig1353:16046..16220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 16047..16220 -
1691480720.3169365-CDS-H-paniculata_contig1353:16046..162201691480720.3169365-CDS-H-paniculata_contig1353:16046..16220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 16047..16220 -
1622929070.6830409-CDS-H-paniculata_contig1353:16936..170641622929070.6830409-CDS-H-paniculata_contig1353:16936..17064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 16937..17064 -
1691480720.3259137-CDS-H-paniculata_contig1353:16936..170641691480720.3259137-CDS-H-paniculata_contig1353:16936..17064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 16937..17064 -
1622929070.6987307-CDS-H-paniculata_contig1353:17526..176001622929070.6987307-CDS-H-paniculata_contig1353:17526..17600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 17527..17600 -
1691480720.3378096-CDS-H-paniculata_contig1353:17526..176001691480720.3378096-CDS-H-paniculata_contig1353:17526..17600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 17527..17600 -
1622929070.715134-CDS-H-paniculata_contig1353:18529..187001622929070.715134-CDS-H-paniculata_contig1353:18529..18700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 18530..18700 -
1691480720.3483179-CDS-H-paniculata_contig1353:18529..187001691480720.3483179-CDS-H-paniculata_contig1353:18529..18700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 18530..18700 -
1622929070.7299397-CDS-H-paniculata_contig1353:19178..192761622929070.7299397-CDS-H-paniculata_contig1353:19178..19276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 19179..19276 -
1691480720.3577154-CDS-H-paniculata_contig1353:19178..192761691480720.3577154-CDS-H-paniculata_contig1353:19178..19276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 19179..19276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1353.2185.1prot_H-paniculata_contig1353.2185.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1353 14782..19276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1353.2185.1

>prot_H-paniculata_contig1353.2185.1 ID=prot_H-paniculata_contig1353.2185.1|Name=mRNA_H-paniculata_contig1353.2185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp
MASERWQQHAQAVAAGRGGGGGFHQRHGRSQSQPDPDAKREQGYVCFIKE
NFGFVRCVDRTGDLFFHLTEAPQDINIGDEVDFVVGTGGRSGKDFALQLH
VLPTGTVKTDTVLEGLFVGVIERDIRSFHPTMPSSQRAQMMGRSRAHDHQ
QPEGLIKITGAAPPEYLPAPVVEESEEDASTQEVGDEIIASPENVEIGAV
SATVQEQEVEGVEDQAPEEDAEHGVSTVGAGAPTTPRATAALGLTGAMVV
YGVGDIVEEDAGPRLRRGDEVLLRVSQENVTGKKKGVEISLLKTSKEKRK
EEQLQKVRASYGEPWFRRSVTAPLIILPRGSQACSTHSIQTRSRICGRIC
Y*
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mRNA from alignment at H-paniculata_contig1353:14655..19294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1353.2185.1 ID=mRNA_H-paniculata_contig1353.2185.1|Name=mRNA_H-paniculata_contig1353.2185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4640bp|location=Sequence derived from alignment at H-paniculata_contig1353:14655..19294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGGGGGGCTGCCGATGGCGAGTGAGCGGTGGCAGCAGCACGCGCA
GGCTGTAGCAGCAGGGCGAGGTGGTGGCGGTGGGTTTCATCAGCGTCACG
GGCGCAGCCAGTCGCAGTGAGTAGCTGTTACTGAGTGAATTTTCTGGATG
CTTCATAACTGTTCTAAAACGTTTGTATTTCCCCTTCATCCCCTGTTTTT
TTCTCGATGGATATTTTCTTGTATCCTAACATGCTAGCGTAATCAACGAC
GGAACTATTATGAACGCTGTAACCCCAACCTGCACTACCTTGAGCCATTG
TGTGCGTCCACAGAATTCCAATCGCTAATTGAAGCGTGCTACGCATGCAC
CAGAACGGCTCCGAGGACAGTGATTTCATGATGGCCCTTTTTTAGTTTAT
AATATGCTGAATCTGCACAGTCAACGACTATTTTCTCGGCCAATTGGTAA
TCGATGAAACACTTGTGACTTACGAACACGGTCTTGAAAATTGTTTTGAA
ATGACCATGACCTACGATATGTGCGTCACCATGTTGGCGTGTTGAATAAC
AACAATACTCCTTTCGATTATCTGCAAACGCATTTATTGGGTAGGCCGGA
CCCTGATGCAAAGCGCGAACAGGGCTACGTGTGCTTCATCAAGGAGAACT
TTGGGTTCGTCCGTTGCGTGGATAGAACCGGAGATCTTTTCTTTCATCTG
ACAGAGGCACCTCAAGATATCAACATTGGGGACGAGGTTGACTTCGTGGT
TGGCACAGGCGGCAGGTATTTACTAATGGCTTTTTCGTGAAATCGAGAGG
TATCGCACCAGAGTGCGAATACTTTTCAAATGCGCTTACTTCGAAAATCA
CGGCGTTACCGAAAGCCACTAGTGTGCCTCTGCAAAGATCTCGCGGATAC
TTGTCGATTGAGGTGTTCGTTCGAACGCGTAAGATCTGATATCGAGATAG
TTGCGTTTGAAGAAAGTTCGCACTGCGGTGCGATTTTCTGTGGGTTTTTC
ATTTTCAGTATGAGTGGATTGATCGACGATAGCGCACAGACCTTTACACG
GTGAGATTTTCGTTTAGGTCTATAAAAGATTGTTGTTTGTATGCACGACT
GTTTGGTTCTTGCACTCGAAACTTGAATTTTCACTTGATTTCTACTCTGT
ACAGTAAGCTTTTGGAAAGGAATCAGGTGGCGTCAAAAGTTATTAAAGTT
TTTGACGCCTGTGGCAGATGACTGAACTGTCTGTTTGTTTCCCATTTCGT
GTAGAAGGCCGTTGGAATGGTAGTGGTGCTTTGTTACGGCATTGCATAAA
CCTAAAATCTATTTACAAATGTCAGGTTGCTCCTCCATTATTAGGAACTC
GTTAATTTTGGTTGGTTCATTTAAAACTCGTCAGTTCATTCATAGGCTTT
TAACATACTTACTACATGGTCATTTCTCACTATGGCAAGGTGAAGATGAT
TTCTTCCCTCCGGAGCAGCTTTTCAAGTCTGTACTGATTGAAGTATCCTC
TCAAAAGCGAATCCTGATGCGAGCTCAGCAAGTCCGTGGTTTGAGGACGG
GCACGATCTGCATGGGCGCAGCAGTTGCCATACTTTGGTACTAGTATATC
AATGTTTTGGTCGTGATAACTAGTCTTCCTCGCAGTCCTGTCTATACGTT
ACGCCGTCTTGTTACACTATCCGTGGCGCATCCCTCCTCTGCAGAAGCGG
CAAAGATTTCGCCCTCCAGCTTCATGTCCTTCCCACTGGAACGGTGAAGA
CCGACACTGTTCTGGAAGGTCTGTACATAACATTAAGTCCATTGAGGCCT
GTTCATACCACTTGGACAAAAAGAGTGGTACATGGAATTTTCTTTGCTCT
CAACGAGTCAGCTTTGTTGTGTCCCGACAAAGGCAGAATCAACGCTGTAA
CTAACGATACCGGAACTATTTCTCGTAACGCTACCCTAGGTCAAGTGTGC
GTTGGGCAGAGCTCAAATTGTAAGTACGCAAATGGCGTGCTGCACATACG
GCAGGACGATCCAGAACGGTGCCGTTGTCATTGTGTCACATTGACTGGTG
CGCAGGGCGATATGACAAGTTTGTGTCGTCATATCATTATTTTTGACACC
ATGGTTTGCGTCGAGTTTGGCCTCCTAGTACATTGCATCGAAAAAAGCCC
TGGAATTCTGATTTTTTGAACGAACCGTACACCGCCCTGCGAATCACACT
TTGTCGCTGTTTGTGGCACTTCGTTGACAGGGTTGTTCGTGGGGGTGATT
GAGCGAGATATTCGCTCCTTCCATCCGACGATGCCCAGCTCGCAGCGCGC
GCAGATGATGGGTAGGTCGCGAGCTCATGATCACCAGCAGCCTGAAGGCC
TTATAAAGGTGTGTGCTCGTGCGGAAAACGGCCATAAAAAATAAATTACG
GGACTCGTATGGTGAACGCATGTGAACGCTAATATAGGATTTTTGTACCT
CCATATACCTGGAGCTCCCAGGAGCCCAAATGAGGCAATTTGCACAAAGT
CTGGCTATAGTAATAATGACCCTTGAACATCACACACCAAGATGTCGGGA
AAGAGCAGAGGGAGGGTGTGAATTATTGCCCCATGTCGAGATACAACTAC
CCTGTCGAGGTTATGCCTCCAAATCATACATGCCAACACAGTAAAAACTG
GAAGATGGCCTCAGGGAAGAATCAGCAAACCACACATACCAAGTATTCAG
TTGGTAGTTGATTTAGCCGTTCCATCGGTTTGGAAGAGGCTATTTCACAA
CAAATAAGACATCTGACAACCAATGTCGAGCTCAGCAGTCTACCTGAACA
GTGCCTCACCAACTCTCTCTCTCTGCTGTATGTATATTCCAGGGCTCACC
ACAGGACCAGACGGAGGTCTGATGCAAGTACTGGCTGCTTAAGGAGCACA
TAGTTTTGTAAGGTCGTTCTTTGGAGGGGATGGGGGTTGGGCTAGTTGTA
AGTTGCTTCAAACGTGAATACAATATATGTCAACGCTTCTAAATACAGTG
GTGTACAAATTTAGCACGTTCATCATTCGCGTTTCGCCGTATTTTTTTAT
CTCTCGCCCGCTGAACACAACCAGATCACAGGAGCTGCGCCTCCCGAGTA
CCTTCCTGCACCCGTAGTGGAAGAAAGTGAGGAAGATGCCTCAACTCAAG
AGGTAGGGGATGAGATTATAGCGTCCCCTGAAAATGTCGAGATAGGGGCT
GTTAGCGCAACGGTCCAAGAGCAAGAGGTGGAGGGCGTCGAAGACCAGGT
GATGTGCGCTGGTTCACGCAGCGTCCTGTTGGGTGGCATATACTCGTTGA
TTTATACGGAAGTCAGCATGAACCTGGCGGGAAAGTTCACCGTGTCCGAA
GTGTTTTCTGTGAGTTTCTCATAAAACAGAAGAGTTCGAGTCTGAGGTCA
GGTTACGTCACTGGTGTTGTGTCGCCATGGTCTATCTACCAGTACGTAGT
ATTGCCCGGGCTACGGTTACACATGCAGGCAATATTCTAGTGTTGTACTC
GACCCATTCCCAACGGCTCGCTACGCTAGAATACTGTTCCTTTTTCAGAT
TTCTTACAAAGTGGAAGTCTTTTTTCGAAATGACAACGATGATGACCGCC
TTACCGCAGTATTGAAGGATGTAGATATTTTTCGCCTTATTCTTTCAGGC
TCCCGAAGAGGACGCTGAACATGGCGTTTCTACCGTGGGTGCTGGTGCAC
CGACGACCCCGCGTGCCACCGCGGCACTCGGCTTGACGGGAGCAATGGTA
GTATACGGGGTAGGAGACATCGTAGAAGAGGATGCGGGACCTCGGCTCAG
GAGGGGGGACGAGGTTCTGCTAAGGGTGAGGCATGTACTGCTCCACTTAC
AGCCATATGGTGTTCTACACATATTTTTGAGTTCCTGTAGGTAGTTCAAC
ATATGGTGGGGATGTTGTTAGCGGGAGCAGACTAAGGCGTCATTCAATCA
AGTACATGTACACTTAATTTACGCTAGAAATAAAGTCGCCGATTTCTAAC
GGCCCATATCTTTGGACATTTGTGTCGTTCAACATAGTAATATATTGTGC
TCTAGTAGTGGTGAAGCGACGGCGATTATTCATGCAGTTCCCGCGCTGTG
CTCAAGACCCTGCTCTAACTGTGGTTCGCTATGCTTGCAAGCAGGCATGC
TGTCTACGATATGATTTTTTACTCTATCCAGAGTTCCTGTATGTAGTACA
GAGTGGAAATTCAAGGTTGGAAGCGATGACAATCTTACGAAGTAATGAAG
GATTTGTGTCATATCTTGTTTGCACGCAGGTGAGTCAGGAAAATGTCACC
GGTAAAAAGAAGGGAGTGGAGATTTCTCTCCTCAAGACTAGCAAGGAAAA
GCGTAAGGAAGAGCAGCTTCAGAAGGTACGTGCTTCGTATGGTGAGCCAT
GGTTTAGGCGGAGCGTTACGGCACCGTTGATAATTTTGCCAAGGGGGTCC
CAAGCATGTTCCACACATTCGATCCAGACACGCTCCAGAATATGTGGCAG
AATCTGTTATTGAAGTGCAATCGGATGTCACGGGCGCTGGAGGTGAAGCA
CCCCGGGTCCAAAGAAAGGCAGCGGGGGGCGGGTTGGCTAGGTCGGTTGA
CGTAAACCTGAGCAGCCTCTGTGGCGGCCCTGAAATTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1353:14655..19294-

>mRNA_H-paniculata_contig1353.2185.1 ID=mRNA_H-paniculata_contig1353.2185.1|Name=mRNA_H-paniculata_contig1353.2185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig1353:14655..19294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGTGAGCGGTGGCAGCAGCACGCGCAGGCTGTAGCAGCAGGGCG
AGGTGGTGGCGGTGGGTTTCATCAGCGTCACGGGCGCAGCCAGTCGCAAT
GGCGAGTGAGCGGTGGCAGCAGCACGCGCAGGCTGTAGCAGCAGGGCGAG
GTGGTGGCGGTGGGTTTCATCAGCGTCACGGGCGCAGCCAGTCGCAGCCG
GACCCTGATGCAAAGCGCGAACAGGGCTACGTGTGCTTCATCAAGGAGAA
CTTTGGGTTCGTCCGTTGCGTGGATAGAACCGGAGATCTTTTCTTTCATC
TGACAGAGGCACCTCAAGATATCAACATTGGGGACGAGGTTGACTTCGTG
GTTGGCACAGGCGGCAGGCCGGACCCTGATGCAAAGCGCGAACAGGGCTA
CGTGTGCTTCATCAAGGAGAACTTTGGGTTCGTCCGTTGCGTGGATAGAA
CCGGAGATCTTTTCTTTCATCTGACAGAGGCACCTCAAGATATCAACATT
GGGGACGAGGTTGACTTCGTGGTTGGCACAGGCGGCAGAAGCGGCAAAGA
TTTCGCCCTCCAGCTTCATGTCCTTCCCACTGGAACGGTGAAGACCGACA
CTGTTCTGGAAGAAGCGGCAAAGATTTCGCCCTCCAGCTTCATGTCCTTC
CCACTGGAACGGTGAAGACCGACACTGTTCTGGAAGGGTTGTTCGTGGGG
GTGATTGAGCGAGATATTCGCTCCTTCCATCCGACGATGCCCAGCTCGCA
GCGCGCGCAGATGATGGGTAGGTCGCGAGCTCATGATCACCAGCAGCCTG
AAGGCCTTATAAAGGGTTGTTCGTGGGGGTGATTGAGCGAGATATTCGCT
CCTTCCATCCGACGATGCCCAGCTCGCAGCGCGCGCAGATGATGGGTAGG
TCGCGAGCTCATGATCACCAGCAGCCTGAAGGCCTTATAAAGATCACAGG
AGCTGCGCCTCCCGAGTACCTTCCTGCACCCGTAGTGGAAGAAAGTGAGG
AAGATGCCTCAACTCAAGAGGTAGGGGATGAGATTATAGCGTCCCCTGAA
AATGTCGAGATAGGGGCTGTTAGCGCAACGGTCCAAGAGCAAGAGGTGGA
GGGCGTCGAAGACCAGATCACAGGAGCTGCGCCTCCCGAGTACCTTCCTG
CACCCGTAGTGGAAGAAAGTGAGGAAGATGCCTCAACTCAAGAGGTAGGG
GATGAGATTATAGCGTCCCCTGAAAATGTCGAGATAGGGGCTGTTAGCGC
AACGGTCCAAGAGCAAGAGGTGGAGGGCGTCGAAGACCAGGCTCCCGAAG
AGGACGCTGAACATGGCGTTTCTACCGTGGGTGCTGGTGCACCGACGACC
CCGCGTGCCACCGCGGCACTCGGCTTGACGGGAGCAATGGTAGTATACGG
GGTAGGAGACATCGTAGAAGAGGATGCGGGACCTCGGCTCAGGAGGGGGG
ACGAGGTTCTGCTAAGGGTGAGGCTCCCGAAGAGGACGCTGAACATGGCG
TTTCTACCGTGGGTGCTGGTGCACCGACGACCCCGCGTGCCACCGCGGCA
CTCGGCTTGACGGGAGCAATGGTAGTATACGGGGTAGGAGACATCGTAGA
AGAGGATGCGGGACCTCGGCTCAGGAGGGGGGACGAGGTTCTGCTAAGGG
TGAGTCAGGAAAATGTCACCGGTAAAAAGAAGGGAGTGGAGATTTCTCTC
CTCAAGACTAGCAAGGAAAAGCGTAAGGAAGAGCAGCTTCAGAAGGTACG
TGCTTCGTATGGTGAGCCATGGTTTAGGCGGAGCGTTACGGCACCGTTGA
TAATTTTGCCAAGGGGGTCCCAAGCATGTTCCACACATTCGATCCAGACA
CGCTCCAGAATATGTGGCAGAATCTGTTATTGATCAGGAAAATGTCACCG
GTAAAAAGAAGGGAGTGGAGATTTCTCTCCTCAAGACTAGCAAGGAAAAG
CGTAAGGAAGAGCAGCTTCAGAAGGTACGTGCTTCGTATGGTGAGCCATG
GTTTAGGCGGAGCGTTACGGCACCGTTGATAATTTTGCCAAGGGGGTCCC
AAGCATGTTCCACACATTCGATCCAGACACGCTCCAGAATATGTGGCAGA
ATCTGTTATTGA
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