mRNA_H-paniculata_contig1352.2182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1352.2182.1
Unique NamemRNA_H-paniculata_contig1352.2182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1352.2182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1352contigH-paniculata_contig1352:10902..11949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1048
Cds size1047
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.766528-CDS-H-paniculata_contig1352:10901..119481622929069.766528-CDS-H-paniculata_contig1352:10901..11948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1352 10902..11948 +
1691480720.0682142-CDS-H-paniculata_contig1352:10901..119481691480720.0682142-CDS-H-paniculata_contig1352:10901..11948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1352 10902..11948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1352.2182.1prot_H-paniculata_contig1352.2182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1352 10902..11948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1352.2182.1

>prot_H-paniculata_contig1352.2182.1 ID=prot_H-paniculata_contig1352.2182.1|Name=mRNA_H-paniculata_contig1352.2182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=349bp
GEGEQERVSVLLTQGSLSSSRSSLCSSSSGGGMEAGRRTASVEKGSGDVS
AAAAAAATIFGVQCDSGHDPGWKGKSQSIATAAAAASAASGGGADAVLRG
DGSKAAGVVRVRDRDRDRDRDRDRDRDRDKDKSRNGNGNGNENGDPMVVV
PDGEGDERNALPRPKSAIGTTGMIRERKRKRDDDGDGDGDVRGGQNDGEE
GAGGDGVGSTDGAGTGASVSDSSLRIRAPVGGTDQHPSRSRRRGPVVARK
LWDAVLQLAVFDVGLGGGGDSSNGDERTGSSGTGASSGAATGAATTASDG
PGGARAATAAQGTTASERSGEGGVNSEGKAGSGSEGVPENVPESDSEMG
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mRNA from alignment at H-paniculata_contig1352:10902..11949+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1352.2182.1 ID=mRNA_H-paniculata_contig1352.2182.1|Name=mRNA_H-paniculata_contig1352.2182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-paniculata_contig1352:10902..11949+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGGGGAGCAAGAGAGAGTAAGTGTTCTTCTTACCCAGGGTAGTCT
TAGTAGCAGTCGTAGTAGTCTTTGTAGTAGTAGTAGTGGTGGTGGTATGG
AGGCGGGGCGCCGAACTGCCAGCGTAGAGAAAGGCAGCGGGGATGTTAGT
GCAGCGGCGGCGGCGGCGGCAACCATTTTCGGCGTCCAATGTGATAGTGG
TCATGACCCAGGATGGAAAGGGAAAAGCCAATCCATCGCCACAGCAGCAG
CAGCAGCAAGCGCGGCTTCCGGCGGTGGCGCCGACGCTGTTCTCCGAGGT
GATGGAAGCAAAGCAGCCGGGGTAGTCAGAGTCAGAGACAGAGACAGAGA
CAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAAAGACAAAAGTC
GAAACGGGAACGGGAACGGGAACGAGAACGGAGATCCAATGGTTGTTGTC
CCTGATGGCGAAGGAGACGAACGAAATGCGCTCCCCCGACCAAAGAGCGC
AATAGGCACAACGGGGATGATAAGAGAGAGGAAGCGCAAACGTGACGATG
ATGGTGATGGTGATGGCGATGTTCGAGGTGGACAGAACGACGGGGAAGAG
GGCGCCGGAGGCGACGGAGTCGGTAGCACTGACGGCGCTGGCACCGGCGC
TAGCGTCTCAGATAGCAGTCTACGGATACGAGCCCCCGTCGGCGGAACGG
ACCAGCATCCTTCGAGGTCGAGACGCAGGGGACCGGTCGTAGCCCGGAAG
CTCTGGGATGCTGTCTTACAACTCGCTGTGTTCGACGTGGGGCTCGGCGG
AGGGGGGGACAGCAGCAACGGAGACGAGAGAACCGGTTCTTCCGGAACCG
GTGCTAGCTCGGGAGCGGCAACCGGAGCGGCAACGACGGCTTCGGATGGA
CCCGGTGGCGCACGGGCGGCTACTGCTGCTCAGGGCACAACTGCCAGCGA
AAGGTCCGGTGAAGGTGGAGTCAACAGTGAAGGCAAAGCCGGTTCCGGTT
CGGAGGGCGTCCCGGAGAATGTCCCCGAAAGTGACTCGGAGATGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1352:10902..11949+

>mRNA_H-paniculata_contig1352.2182.1 ID=mRNA_H-paniculata_contig1352.2182.1|Name=mRNA_H-paniculata_contig1352.2182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2094bp|location=Sequence derived from alignment at H-paniculata_contig1352:10902..11949+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGGGGAGCAAGAGAGAGTAAGTGTTCTTCTTACCCAGGGTAGTCT
TAGTAGCAGTCGTAGTAGTCTTTGTAGTAGTAGTAGTGGTGGTGGTATGG
AGGCGGGGCGCCGAACTGCCAGCGTAGAGAAAGGCAGCGGGGATGTTAGT
GCAGCGGCGGCGGCGGCGGCAACCATTTTCGGCGTCCAATGTGATAGTGG
TCATGACCCAGGATGGAAAGGGAAAAGCCAATCCATCGCCACAGCAGCAG
CAGCAGCAAGCGCGGCTTCCGGCGGTGGCGCCGACGCTGTTCTCCGAGGT
GATGGAAGCAAAGCAGCCGGGGTAGTCAGAGTCAGAGACAGAGACAGAGA
CAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAAAGACAAAAGTC
GAAACGGGAACGGGAACGGGAACGAGAACGGAGATCCAATGGTTGTTGTC
CCTGATGGCGAAGGAGACGAACGAAATGCGCTCCCCCGACCAAAGAGCGC
AATAGGCACAACGGGGATGATAAGAGAGAGGAAGCGCAAACGTGACGATG
ATGGTGATGGTGATGGCGATGTTCGAGGTGGACAGAACGACGGGGAAGAG
GGCGCCGGAGGCGACGGAGTCGGTAGCACTGACGGCGCTGGCACCGGCGC
TAGCGTCTCAGATAGCAGTCTACGGATACGAGCCCCCGTCGGCGGAACGG
ACCAGCATCCTTCGAGGTCGAGACGCAGGGGACCGGTCGTAGCCCGGAAG
CTCTGGGATGCTGTCTTACAACTCGCTGTGTTCGACGTGGGGCTCGGCGG
AGGGGGGGACAGCAGCAACGGAGACGAGAGAACCGGTTCTTCCGGAACCG
GTGCTAGCTCGGGAGCGGCAACCGGAGCGGCAACGACGGCTTCGGATGGA
CCCGGTGGCGCACGGGCGGCTACTGCTGCTCAGGGCACAACTGCCAGCGA
AAGGTCCGGTGAAGGTGGAGTCAACAGTGAAGGCAAAGCCGGTTCCGGTT
CGGAGGGCGTCCCGGAGAATGTCCCCGAAAGTGACTCGGAGATGGGGGGG
GAGGGGGAGCAAGAGAGAGTAAGTGTTCTTCTTACCCAGGGTAGTCTTAG
TAGCAGTCGTAGTAGTCTTTGTAGTAGTAGTAGTGGTGGTGGTATGGAGG
CGGGGCGCCGAACTGCCAGCGTAGAGAAAGGCAGCGGGGATGTTAGTGCA
GCGGCGGCGGCGGCGGCAACCATTTTCGGCGTCCAATGTGATAGTGGTCA
TGACCCAGGATGGAAAGGGAAAAGCCAATCCATCGCCACAGCAGCAGCAG
CAGCAAGCGCGGCTTCCGGCGGTGGCGCCGACGCTGTTCTCCGAGGTGAT
GGAAGCAAAGCAGCCGGGGTAGTCAGAGTCAGAGACAGAGACAGAGACAG
AGACAGAGACAGAGACAGAGACAGAGACAGAGACAAAGACAAAAGTCGAA
ACGGGAACGGGAACGGGAACGAGAACGGAGATCCAATGGTTGTTGTCCCT
GATGGCGAAGGAGACGAACGAAATGCGCTCCCCCGACCAAAGAGCGCAAT
AGGCACAACGGGGATGATAAGAGAGAGGAAGCGCAAACGTGACGATGATG
GTGATGGTGATGGCGATGTTCGAGGTGGACAGAACGACGGGGAAGAGGGC
GCCGGAGGCGACGGAGTCGGTAGCACTGACGGCGCTGGCACCGGCGCTAG
CGTCTCAGATAGCAGTCTACGGATACGAGCCCCCGTCGGCGGAACGGACC
AGCATCCTTCGAGGTCGAGACGCAGGGGACCGGTCGTAGCCCGGAAGCTC
TGGGATGCTGTCTTACAACTCGCTGTGTTCGACGTGGGGCTCGGCGGAGG
GGGGGACAGCAGCAACGGAGACGAGAGAACCGGTTCTTCCGGAACCGGTG
CTAGCTCGGGAGCGGCAACCGGAGCGGCAACGACGGCTTCGGATGGACCC
GGTGGCGCACGGGCGGCTACTGCTGCTCAGGGCACAACTGCCAGCGAAAG
GTCCGGTGAAGGTGGAGTCAACAGTGAAGGCAAAGCCGGTTCCGGTTCGG
AGGGCGTCCCGGAGAATGTCCCCGAAAGTGACTCGGAGATGGGG
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