mRNA_H-paniculata_contig13513.2177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13513.2177.1
Unique NamemRNA_H-paniculata_contig13513.2177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: D8LTK4_ECTSI (Caffeoyl-CoA O-Methyltransferase (N-terminal region) Caffeoyl-CoA O-Methyltransferase (C-terminal r) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.590e-36
Identity = 71/121 (58.68%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALE-AEDVYGPETEPRNVPTTRGANAAS------DVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWKDGSYP 342
            +RYWDY EK L+ PRPLL+PTG+LLADNVLFH+LVPLAEA+  A    G E  P   P   G  A +        T RR KIA+SL+ FN+RV ED RV+ LMLP+RDGLSVVRW+ G YP
Sbjct:  106 KRYWDYLEKVLSGPRPLLAPTGLLLADNVLFHELVPLAEAMATATTGEGEEISP---PAMGGEGARAVGAGVLAPTSRRMKIAESLDRFNKRVKEDGRVEVLMLPLRDGLSVVRWRAGGYP 223          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A6H5KFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.450e-34
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEAL-EAEDVYGPETEPRNVPTTRGANAASDV---TPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWKDGSYP 342
            +RYWDY+EK L+ PRPLL+PTG+LLADNVLFH+LVP AEA+  A    G E  P ++         + V   TPRR KIA+SL+ FN+RV ED RV+ LMLP+RDGLSVVRW+   +P
Sbjct:  286 KRYWDYFEKVLSGPRPLLAPTGLLLADNVLFHELVPFAEAMGTATTREGEEISPPSMGGEGARAIGAGVLAPTPRRMKIAESLDRFNKRVKEDGRVEVLMLPLRDGLSVVRWRARGFP 403          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A7S4DMY4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMY4_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.710e-12
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVP-LAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            + Y  YYE  LA  + L+   G+++ DNVLF  +V  +A+  EA+    P + P + PT+R          R  KIA++L++FN  VA D+R ++++LPIRDGL+++R K
Sbjct:  191 KMYLRYYEAILA--KKLIKTGGLIIVDNVLFRGMVAEVADETEADAAAIPSS-PSSSPTSR----EEKTRKRHLKIAQALHEFNSAVAADERTESVLLPIRDGLTIIRRK 293          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A7J7IJY6_9RHOD (Rhodanese domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJY6_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRW 324
            R+Y  YYE  L   R LL+P G LL DNVLF  L       + EDV                + A  +  R  K+ +++++FN+ V ED RV  ++LPIRDG+S+++W
Sbjct:  682 RQYIAYYEFILE--RRLLAPHGALLVDNVLFRPLYGKQRHADLEDV-------------ELGDRAERIALRSTKLMQAVHEFNKHVQEDARVTQVILPIRDGVSIIQW 774          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: M1VM75_CYAM1 (Rhodanese domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VM75_CYAM1)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-9
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            RRY  Y++  L     LLSP G LL DNVLF  +    +  + EDV   E              A  +  R  K+  +++ FN+ V ED RV  ++LPIRDGLS+++W+
Sbjct:  679 RRYITYFDFIL--DHRLLSPNGALLVDNVLFRPVYGKQKHAQMEDVEFGEH-------------AERIALRSRKLMDAVHAFNQHVLEDARVTQVILPIRDGLSIIQWR 772          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A7S1U1X2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1X2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.320e-9
Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    1 RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            R Y DY +       PLL P  ++  DN LF  LVP     E      P   P+             +  R  KIA++++ FN  VA +DR +  +LP+RDGL+++R+K
Sbjct:  157 RSYRDYLDMVT----PLLRPNALVFVDNTLFRGLVPFVPDGELPQETNPNPNPK-------------LRARHEKIAEAMHAFNAAVAANDRFEQAILPLRDGLNIIRFK 248          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A7S1FKH6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKH6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.150e-9
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    4 RYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEA-LEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            R  DY E ALA    +L+P G ++ DNVL+   V   +  +E E+V     +PR          A  ++ R  K+A +++ FN  V ED R++ ++LP+RDGLS++R K
Sbjct:   31 RMLDYVE-ALARDDRILAPGGTIVVDNVLWKGGVLNQQGGMEKEEVEEEGADPR----------ARKLSRRAKKLAGAMHRFNAAVVEDKRLEVVLLPLRDGLSIIRKK 128          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A8H7Q3G7_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q3G7_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.820e-7
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    7 YWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            Y +Y+ + ++  R LLS  G++L DNVLF  LVP  +A+E+E       +P+N    R               A+ L+ FN+ + +D RV+ ++LP+ DGLS+++ K
Sbjct:  172 YINYFNQIMS--RSLLSDRGVILVDNVLFRGLVP--QAMESE------IDPQNKGLMR--------------TARQLHAFNQHIKDDPRVEQIILPLYDGLSIIQKK 254          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A448ZGU7_9STRA (Rhodanese domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGU7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-7
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 RYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVRWK 327
            R  +Y E  L + R LL+  G+++ DNVL+  LV   EA   E V   + E       R    A        K+A +++ FN  +A DDRV+ L+LP+RDGLSV+R K
Sbjct:  866 RLLEYVEACLKSDR-LLNRGGLIVVDNVLWKGLV--LEASTGEFVSVSDREDSEKAELRKNRRAR-------KLATTMHRFNSAIAGDDRVEVLVLPMRDGLSVIRKK 963          
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Match: A0A7S4W7P8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W7P8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.620e-7
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    4 RYWDYYEKALAAPRPLLSPTGILLADNVLFHDLV--PLAEALEAEDVYGPETEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIRDGLSVVR 321
            R  DY E  + + R +L   G+++ DNVL+  LV      A+  ED+   E    N    +   A         K+A  ++ FN  + +DDRV+ ++LPIRDGLS++R
Sbjct:  361 RLLDYVEACVGSDR-VLKKGGLIIVDNVLWKGLVLESAGGAMTKEDIDESEKNMDNTEVKKSRRAR--------KLAGKMHIFNSAIVKDDRVEVVVLPIRDGLSIIR 459          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13513.2177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTK4_ECTSI2.590e-3658.68Caffeoyl-CoA O-Methyltransferase (N-terminal regio... [more]
A0A6H5KFJ8_9PHAE3.450e-3456.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DMY4_9EUKA2.710e-1238.18Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7J7IJY6_9RHOD1.180e-1037.04Rhodanese domain-containing protein n=1 Tax=Cyanid... [more]
M1VM75_CYAM11.040e-936.70Rhodanese domain-containing protein n=1 Tax=Cyanid... [more]
A0A7S1U1X2_9STRA3.320e-933.03Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1FKH6_9STRA8.150e-935.78Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8H7Q3G7_9FUNG1.820e-733.64Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A448ZGU7_9STRA2.080e-737.96Rhodanese domain-containing protein n=1 Tax=Pseudo... [more]
A0A7S4W7P8_9STRA2.620e-733.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13513contigH-paniculata_contig13513:238..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D8LTK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.O-methyltransferase activity
EggNOG OGsCOG4122@1,KOG1663@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.525657-CDS-H-paniculata_contig13513:237..4191622929069.525657-CDS-H-paniculata_contig13513:237..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13513 238..419 +
1691480719.9576745-CDS-H-paniculata_contig13513:237..4191691480719.9576745-CDS-H-paniculata_contig13513:237..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13513 238..419 +
1622929069.5421329-CDS-H-paniculata_contig13513:470..6451622929069.5421329-CDS-H-paniculata_contig13513:470..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13513 471..645 +
1691480719.9699564-CDS-H-paniculata_contig13513:470..6451691480719.9699564-CDS-H-paniculata_contig13513:470..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13513 471..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13513.2177.1prot_H-paniculata_contig13513.2177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13513 238..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13513.2177.1

>prot_H-paniculata_contig13513.2177.1 ID=prot_H-paniculata_contig13513.2177.1|Name=mRNA_H-paniculata_contig13513.2177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
RRYWDYYEKALAAPRPLLSPTGILLADNVLFHDLVPLAEALEAEDVYGPE
TEPRNVPTTRGANAASDVTPRRWKIAKSLNDFNRRVAEDDRVQALMLPIR
DGLSVVRWKDGSYPNPSQ*
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mRNA from alignment at H-paniculata_contig13513:238..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13513.2177.1 ID=mRNA_H-paniculata_contig13513.2177.1|Name=mRNA_H-paniculata_contig13513.2177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig13513:238..645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGATATTGGGACTACTACGAAAAGGCACTTGCGGCTCCGAGACCTCT CCTATCGCCAACCGGAATCTTACTTGCAGATAATGTCTTGTTCCACGATT TGGTCCCTCTAGCCGAGGCACTTGAGGCCGAGGATGTTTATGGACCAGAG ACTGAACCAAGGAACGTTCCTACGACTCGCGGGTATGTCGAGGGCAAAGT ACCATCGGGAGCTTCGGCCCGAGAAACGGGGAGTGCGAATGCTGCATCAG ATGTTACTCCTCGACGTTGGAAAATTGCGAAATCTCTGAATGATTTCAAC AGAAGAGTTGCAGAAGATGACAGGGTACAGGCTTTGATGCTCCCGATCAG GGATGGATTGTCGGTAGTCCGGTGGAAGGACGGTTCCTACCCCAACCCAA GCCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13513:238..645+

>mRNA_H-paniculata_contig13513.2177.1 ID=mRNA_H-paniculata_contig13513.2177.1|Name=mRNA_H-paniculata_contig13513.2177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig13513:238..645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGATATTGGGACTACTACGAAAAGGCACTTGCGGCTCCGAGACCTCT
CCTATCGCCAACCGGAATCTTACTTGCAGATAATGTCTTGTTCCACGATT
TGGTCCCTCTAGCCGAGGCACTTGAGGCCGAGGATGTTTATGGACCAGAG
ACTGAACCAAGGAACGTTCCTACGACTCGCGGCGCAGATATTGGGACTAC
TACGAAAAGGCACTTGCGGCTCCGAGACCTCTCCTATCGCCAACCGGAAT
CTTACTTGCAGATAATGTCTTGTTCCACGATTTGGTCCCTCTAGCCGAGG
CACTTGAGGCCGAGGATGTTTATGGACCAGAGACTGAACCAAGGAACGTT
CCTACGACTCGCGGTGCGAATGCTGCATCAGATGTTACTCCTCGACGTTG
GAAAATTGCGAAATCTCTGAATGATTTCAACAGAAGAGTTGCAGAAGATG
ACAGGGTACAGGCTTTGATGCTCCCGATCAGGGATGGATTGTCGGTAGTC
CGGTGGAAGGACGGTTCCTACCCCAACCCAAGCCAATGATGCGAATGCTG
CATCAGATGTTACTCCTCGACGTTGGAAAATTGCGAAATCTCTGAATGAT
TTCAACAGAAGAGTTGCAGAAGATGACAGGGTACAGGCTTTGATGCTCCC
GATCAGGGATGGATTGTCGGTAGTCCGGTGGAAGGACGGTTCCTACCCCA
ACCCAAGCCAATGA
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