prot_H-paniculata_contig13511.2175.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13511.2175.1
Unique Nameprot_H-paniculata_contig13511.2175.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length750
Homology
BLAST of mRNA_H-paniculata_contig13511.2175.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 8.460e-41
Identity = 110/201 (54.73%), Postives = 131/201 (65.17%), Query Frame = 0
Query:  556 VDGEGGL--VRRAMNNLRHTADVALAYDLDVLGGDGLGSHGVAATAAAELDDEEELSAVVGGAILESFLPTEACDSCQVSDAGGAAVNSPHGPGGARARRFRFGGRAERSIHSFSDSR-----SKKEKPISEVAHADQNEFAAGAGAVPVTVTPSELGRARVVGQAGRKFILLRAETGAILCVDQHAADERIKLEELQLQV 749
            V+G GG    R +  +    A  ALAYD DVLGGDGLG  G         ++EEE   V G  +L  FL T   DSC VSDAGGAAV SP GPGG RAR+   GG AE++     DSR      ++E+ I +V  A Q+E  AGAGAV VTVTP EL  A ++GQAGRKFILLRA+TGA+LC+DQHAADER+KLEEL+ QV
Sbjct: 1258 VEGGGGRGGARSSKEDRMRAAGAALAYDQDVLGGDGLGGDG---------EEEEEPDTVDG--VLGKFLATGDYDSCHVSDAGGAAVYSPQGPGGDRARKA--GGEAEKAAPE-KDSRYNPLPGRRERQIPQVLQAGQDEVGAGAGAVAVTVTPEELSEALLIGQAGRKFILLRAKTGAVLCLDQHAADERVKLEELERQV 1444          
BLAST of mRNA_H-paniculata_contig13511.2175.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.900e-18
Identity = 69/144 (47.92%), Postives = 82/144 (56.94%), Query Frame = 0
Query:  574 ADVALAYDLDVLGGDGLGSHGVAATAAAELDDEEELSAVVGGAILESFLPTEACDSCQVSDAGGAAVNSPHGPGGARARRFRFGGRAERSIHSFSDSRS----KKEKPISEVAHADQNEFAAGAGAVPVTVTPSELGRARVVGQ 713
            A  ALAYD DVLGGDGLG               E+   V G  +L  FL T   DSC VSDAGG AV SP GPGG RAR+   GG AE++        +    ++E+ I +V  A Q+E  AGAGAV VTVTP ELG A ++GQ
Sbjct: 1198 AGAALAYDQDVLGGDGLGXX---------XXXXEKPDTVDG--VLGKFLATGGYDSCHVSDAGGRAVYSPQGPGGGRARKA--GGEAEKAAAETDSQHNPLPGRRERQIPQVLQAGQDEVGAGAGAVAVTVTPEELGEALLIGQ 1328          
BLAST of mRNA_H-paniculata_contig13511.2175.1 vs. uniprot
Match: H3HC10_PHYRM (MutL_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HC10_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 4.570e-5
Identity = 26/56 (46.43%), Postives = 41/56 (73.21%), Query Frame = 0
Query:  697 PVTVTPSELGRARVVGQAGRKFILLRAETGA---ILCVDQHAADERIKLEELQLQV 749
            P+ ++ + L   +V+ Q  RKFIL+RA+T     +LC+DQHAADER++LE+L+L +
Sbjct:   42 PIKISKATLANLQVIRQVDRKFILVRADTPRGKLLLCIDQHAADERVRLEKLELDM 97          
BLAST of mRNA_H-paniculata_contig13511.2175.1 vs. uniprot
Match: A0A1X2HC61_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HC61_SYNRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.320e-5
Identity = 59/164 (35.98%), Postives = 81/164 (49.39%), Query Frame = 0
Query:  601 AELDDEE---ELSAVVGGAILESFLPTEACDSCQ-------VSDAGGAAVNSPHGPGGARARRFRFGGRAERSI--HSFSDSRSKKEKPISE---VAHADQNEFAAGAGAV----PVTVTPSELGRARVVGQAGRKFILLRAETGAILCVDQHAADERIKLEEL 745
            A LDD E    L+A V  A+  SFL  ++C S           D+   + + P  P   R+     G  A R    H+   ++ ++  P+S    V       FAAG  A     P  +T S+L RA VV Q  RKFILLR +T  +L VDQHAADER++LE++
Sbjct:  323 ATLDDSEFGIRLAARVRRAVA-SFLRLQSCISTAHYRQFTTQEDSERFSSSQPTPPAHVRSPIRAAGSSAARMFLEHATPAAKRRRPTPVSNDDGVPSKQLTPFAAGGTAGDLPWPHQLTKSDLARAEVVSQVDRKFILLRLDT-LLLLVDQHAADERVRLEQM 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13511.2175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G9D8_ECTSI8.460e-4154.73MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWV7_9PHAE5.900e-1847.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3HC10_PHYRM4.570e-546.43MutL_C domain-containing protein n=1 Tax=Phytophth... [more]
A0A1X2HC61_SYNRA5.320e-535.98Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 305..327
IPR014790MutL, C-terminal, dimerisationPFAMPF08676MutL_Ccoord: 709..748
e-value: 2.6E-5
score: 24.0
IPR042120MutL, C-terminal domain, dimerisation subdomainGENE3D2.30.42.20coord: 702..750
e-value: 1.4E-5
score: 26.8
IPR038973DNA mismatch repair protein MutL/Mlh/PmsPANTHERPTHR10073DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTLcoord: 299..745
IPR028830DNA mismatch repair protein Mlh3PANTHERPTHR10073:SF47DNA MISMATCH REPAIR PROTEIN MLH3coord: 299..745

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13511contigH-paniculata_contig13511:3072..7114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13511.2175.1mRNA_H-paniculata_contig13511.2175.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13511 2526..7114 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13511.2175.1 ID=prot_H-paniculata_contig13511.2175.1|Name=mRNA_H-paniculata_contig13511.2175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=750bp
MEATKAAAGGITPMVAAVMTGEAVEIAQPRKRALLESGRGEGPGLWFDEK
SAPSRRPVAGATVRRPPSPKFDFFAAETEASAPTLSSISSRIHDGDGRRE
MHSPPALRQKQEENRGGDEALVATDEVQGKSRSPAHEPRGSSSNSSSPIA
SERLLLGRKRDGFSRFAPPLSGADIVSEMSGESRQVDDGHPPVLATVTQA
TASHESYRTGKANDASRLASTSPRALFARKRARPTSDACIDDAPASAGSS
SSYSPPSCPPPNRRQRRHSPLVLERSTRASTNEDEKATARLPSRGGHGIQ
ASTPRTEEQEEAKEEEEEEDQEDQERVILGNGWLGKRANSPRRCRQGRWN
GQGLTGSGRGSPRDLAGGAVNEASSSGGGNDDHVRGTTSAIDEGVEPSAE
ASVASEETSGEPRVHGGWERHRNSEREGDSERVTGSEDDGQSEGGNRLPS
GDKQLAPAMQVDVGESHTSSPEEVQGAHRMQSFKSKEQGGTHSEDVRRQL
QQRETGALPEAENTATVDVPSFETSFDATAQAPGRSSSTGGRSSDESAKS
DRGRGVDGEGGLVRRAMNNLRHTADVALAYDLDVLGGDGLGSHGVAATAA
AELDDEEELSAVVGGAILESFLPTEACDSCQVSDAGGAAVNSPHGPGGAR
ARRFRFGGRAERSIHSFSDSRSKKEKPISEVAHADQNEFAAGAGAVPVTV
TPSELGRARVVGQAGRKFILLRAETGAILCVDQHAADERIKLEELQLQVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014790MutL_C
IPR042120MutL_C_dimsub
IPR038973MutL/Mlh/Pms
IPR028830Mlh3