mRNA_H-paniculata_contig13460.2156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13460.2156.1
Unique NamemRNA_H-paniculata_contig13460.2156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13460.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13460contigH-paniculata_contig13460:3111..3566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13460.2156.1prot_H-paniculata_contig13460.2156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13460 3138..3566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.1950421-UTR-H-paniculata_contig13460:3110..31371622929067.1950421-UTR-H-paniculata_contig13460:3110..3137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13460 3111..3137 +
1691480718.8132448-UTR-H-paniculata_contig13460:3110..31371691480718.8132448-UTR-H-paniculata_contig13460:3110..3137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13460 3111..3137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.2088017-CDS-H-paniculata_contig13460:3137..34191622929067.2088017-CDS-H-paniculata_contig13460:3137..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13460 3138..3419 +
1691480718.8236403-CDS-H-paniculata_contig13460:3137..34191691480718.8236403-CDS-H-paniculata_contig13460:3137..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13460 3138..3419 +
1622929067.2237368-CDS-H-paniculata_contig13460:3503..35661622929067.2237368-CDS-H-paniculata_contig13460:3503..3566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13460 3504..3566 +
1691480718.8439429-CDS-H-paniculata_contig13460:3503..35661691480718.8439429-CDS-H-paniculata_contig13460:3503..3566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13460 3504..3566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13460.2156.1

>prot_H-paniculata_contig13460.2156.1 ID=prot_H-paniculata_contig13460.2156.1|Name=mRNA_H-paniculata_contig13460.2156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MEPGEESTKFLLRVDRVPNDLERLGKTVDEDGRNLAIVNGLSPEYDIERR
MIESSDDTPNIARIETIIVNQYNRLQQQKAETGAKALAVTMKGTKTFDSN
CSHCRKHGHRGEDCW
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mRNA from alignment at H-paniculata_contig13460:3111..3566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13460.2156.1 ID=mRNA_H-paniculata_contig13460.2156.1|Name=mRNA_H-paniculata_contig13460.2156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig13460:3111..3566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGCGCGAATTTCAGTTCCTCAGGATGGAGCCCGGGGAAGAATCCAC
AAAATTCCTTTTGCGGGTGGACCGGGTCCCCAATGACTTAGAGCGGCTTG
GGAAGACCGTCGACGAAGATGGCAGGAATCTGGCGATAGTGAACGGGCTA
TCACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACAC
GCCAAATATAGCGCGCATCGAAACGATCATCGTAAACCAGTACAATAGGC
TTCAGCAGCAGAAAGCCGAGACCGGAGCGAAGGCACTGGCGGTCACGATG
AAAGGTACAGTGGACACTTGCCAGTTGTCCTACAAGCTTGGGCTCACAGC
TACTCAATGCAGGGGGGGTCGAAGGACATCCTCGAACATCAAGAAAACGT
TCGACAGCAATTGCAGCCACTGCAGGAAACATGGACATCGCGGTGAGGAC
TGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13460:3111..3566+

>mRNA_H-paniculata_contig13460.2156.1 ID=mRNA_H-paniculata_contig13460.2156.1|Name=mRNA_H-paniculata_contig13460.2156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig13460:3111..3566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCCGGGGAAGAATCCACAAAATTCCTTTTGCGGGTGGACCGGGT
CCCCAATGACTTAGAGCGGCTTGGGAAGACCGTCGACGAAGATGGCAGGA
ATCTGGCGATAGTGAACGGGCTATCACCAGAGTATGACATTGAGAGGAGA
ATGATCGAGAGCAGCGATGACACGCCAAATATAGCGCGCATCGAAACGAT
CATCGTAAACCAGTACAATAGGCTTCAGCAGCAGAAAGCCGAGACCGGAG
CGAAGGCACTGGCGGTCACGATGAAAGGTACAATGGAGCCCGGGGAAGAA
TCCACAAAATTCCTTTTGCGGGTGGACCGGGTCCCCAATGACTTAGAGCG
GCTTGGGAAGACCGTCGACGAAGATGGCAGGAATCTGGCGATAGTGAACG
GGCTATCACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGAT
GACACGCCAAATATAGCGCGCATCGAAACGATCATCGTAAACCAGTACAA
TAGGCTTCAGCAGCAGAAAGCCGAGACCGGAGCGAAGGCACTGGCGGTCA
CGATGAAAGGTACAAAAACGTTCGACAGCAATTGCAGCCACTGCAGGAAA
CATGGACATCGCGGTGAGGACTGCTGGAAAACGTTCGACAGCAATTGCAG
CCACTGCAGGAAACATGGACATCGCGGTGAGGACTGCTGG
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