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Homology
BLAST of mRNA_H-paniculata_contig1336.2103.1 vs. uniprot
Match: D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI) HSP 1 Score: 130 bits (327), Expect = 8.430e-29 Identity = 133/386 (34.46%), Postives = 177/386 (45.85%), Query Frame = 3
Query: 600 WLLTAYVDFVLWWKLIPCAVGVGSSAGRSC----GVGRTIMSHPRQFAVFHVLLALALVSHMMVMAADPGFILSEALLPVHGTKSLEGPQPWCDRCKAFKPFRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQFLLLLLYSGACAAHALALLRQFFWSRFASPNISLLCGYSPFASIAGLDHRVGDDGIGDLEGFPSGILLYSGFAAVVLTWLIALFIAQCHGIAVEAGTVDRMQQARSRGRTPEQQTSVTR---DKQSSLALLGSLSTMSASPL---------RTRKAADDAPTLRHTVRVNR------------LEMAIS--QGTHSWRDSDSS---------ILRAWWKALREEILGEGSWMMWFLPTRAELSPQAASRVY 1640
W+ ++ LWW+ CA + + + V + + ++ F FHVLL LAL+SH+ DPGF + L G G WC C+A+KP RAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQ LL L+YS ACA HA F + R LC F +LL + +WL+ L +Q HGI V AGTVDRMQ A R Q ++ D + G L T P R D+ T + + E+A+S + T D++ ++R W+ + +EILGEG+W++WF+PT A LSP+ RVY
Sbjct: 119 WIFALEAEYFLWWRG-GCAAPIERPSWCTIPALGSVVKVVHAYGWHFVCFHVLLCLALLSHVAATVTDPGFFSRGSHLL--GRAQERGSGRWCSHCEAYKPPRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLFLVYSAACAVHA-----AFLFCR--------LC-----------------------NAFLMAVLLVG-----IFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRVY 460
BLAST of mRNA_H-paniculata_contig1336.2103.1 vs. uniprot
Match: A0A7S3PAG9_9STRA (Palmitoyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PAG9_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 7.950e-6 Identity = 35/109 (32.11%), Postives = 52/109 (47.71%), Query Frame = 3
Query: 735 FHVLLALALVSHMMVMAADPGFILSEALLPVHGTKSLEGPQP----WCDRCKAFKPFRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQFLLLLLYSGACAAHALALL 1049
F ++ALA++SH+ M DPG + +A P+ + +LE C +C +FKP R HHC G GNHK FLL L+Y + +AL ++
Sbjct: 82 FSTIVALAILSHLKAMTTDPGAVPRDAR-PLDHSDTLENANKKNYRMCLKCNSFKPGRTHHCSICRRCVVKMDHHCPWVNNCVGLGNHKFFLLFLMYVFTASIYALTII 189
BLAST of mRNA_H-paniculata_contig1336.2103.1 vs. uniprot
Match: A0A7K7NQ94_HALAL (Palmitoyltransferase (Fragment) n=2 Tax=Accipitrinae TaxID=8955 RepID=A0A7K7NQ94_HALAL) HSP 1 Score: 56.6 bits (135), Expect = 2.350e-5 Identity = 35/115 (30.43%), Postives = 52/115 (45.22%), Query Frame = 3
Query: 717 PRQFAVFHVLLALALVSHMMVMAADPGFI-LSEALLPVHG--TKSLEGPQPW--CDRCKAFKPFRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQFLLLLLYSGACAAHALAL 1046
P A F++++ L L H + ADPG + L + + T S + + W CDRC+A++P RAHHCR G N K F+ L Y+G + +A L
Sbjct: 51 PFHAAAFNLIVLLLLACHARAVLADPGVVPLPDTAIDFSDLRTPSQQSQEDWTVCDRCEAYRPPRAHHCRICHRCVRRMDHHCPWINNCVGELNQKYFIQFLFYAGVASLYAAGL 165
BLAST of mRNA_H-paniculata_contig1336.2103.1 vs. uniprot
Match: A0A1Y3EYV0_9BILA (Palmitoyltransferase n=5 Tax=Trichinella TaxID=6333 RepID=A0A1Y3EYV0_9BILA) HSP 1 Score: 55.8 bits (133), Expect = 8.030e-5 Identity = 53/108 (49.07%), Postives = 62/108 (57.41%), Query Frame = 3
Query: 729 AVFHVLLALALVSHMMVMAADPGFI----LSEALLPVHGTKSLEGPQPWCDRCKAFKPFRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQFLLLLLYSGACAAHAL 1040
AVFHVLL LAL+SH+ M DPG I SE + + K E C +C + KP RAHH XXXXXXXXXXXXXXX G GN K F+L Y + HA+
Sbjct: 62 AVFHVLLVLALISHVKTMLTDPGAIPKGNASEESMQLLNLKRGETVYK-CGKCYSIKPERAHHXXXXXXXXXXXXXXXXXVNNCVGEGNQKFFVLFTFYIALISCHAI 168
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 121.3 |
| Seed ortholog evalue | 8.1e-25 |
| Seed eggNOG ortholog | 2880.D8LB50 |
| Hectar predicted targeting category | signal peptide |
| EggNOG free text desc. | protein-cysteine S-palmitoyltransferase activity |
| EggNOG OGs | COG5273@1,KOG1311@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 1865 |
| Cds size | 963 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1336.2103.1 >prot_H-paniculata_contig1336.2103.1 ID=prot_H-paniculata_contig1336.2103.1|Name=mRNA_H-paniculata_contig1336.2103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=321bp
MSHPRQFAVFHVLLALALVSHMMVMAADPGFILSEALLPVHGTKSLEGPQ
PWCDRCKAFKPFRAHHCRRCGACVARMDHHCIYAANCVGAGNHKQFLLLL
LYSGACAAHALALLRQFFWSRFASPNISLLCGYSPFASIAGLDHRVGDDG
IGDLEGFPSGILLYSGFAAVVLTWLIALFIAQCHGIAVEAGTVDRMQQAR
SRGRTPEQQTSVTRDKQSSLALLGSLSTMSASPLRTRKAADDAPTLRHTV
RVNRLEMAISQGTHSWRDSDSSILRAWWKALREEILGEGSWMMWFLPTRA
ELSPQAASRVYCGADEPPLN* back to topmRNA from alignment at H-paniculata_contig1336:12413..16882- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1336.2103.1 ID=mRNA_H-paniculata_contig1336.2103.1|Name=mRNA_H-paniculata_contig1336.2103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4470bp|location=Sequence derived from alignment at H-paniculata_contig1336:12413..16882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGACATCAGCCTTATTTGCTTTCGTTTGGGGTATCTTCGTGCATTTT
TGACATCGTGGCAACGAGTTTGGTTGCCGCTGTCGAAAACGTTGAAGCGA
TGAAACATTACAGGTGATCAACGCTACAGATACAATCTTGTCAGACAGTA
AAAATTGGCAGTAGAGTAAATTACAGACAGTATTTACTGCCATATGCATT
AGGGTAAATTACAGACGGCACATATATGCACATCGTACCGCATACCGAAC
ATGCTTTCATGGGTCAAACCAGGTAAGCTGCAACTTGCCCAGTCAGTCAG
GTGTCACGTTGTTTGGTTTCATATTTATACATACAACATTTTTTTCTGTC
ATCTCAGTCATAAGTTGCTGAACAAAATGAAGCAGGTGACAGCCACGCTG
CTTTATTTCGCGTTTCTGTCCCCATGGTGGATATGATACGTGTTAACGTA
TGAACGAATTGAGCCTCGGCAAACTATATGATATACTGTAGATGCGATAG
GCCCCCAAGTGCGATCCCATGTGTTTTTCTCACCACTGGAGAGTCATGTA
CAGTATCTCTTGCTCTTCGTGCAAAGTGATATTAATAGTAAAATTCAGCA
GCCGCGAGTATTGTTCGGTATTTCGTGGCCTCGACATGTTTTCTTTCTTT
CTATCCCAGACACAAAAAAAAAAATCTGTATCAGCAGCATCGAGAGGGGC
TTCCACGTGTTTGGATTTGTAACGCGTGTGTAAAGACTAGAGTCTTGGAT
CTCTTACTAGGGTGAAGACGTGGCAGATAGGGGGGGGGGGTATTGACTCA
CTCAGTCCTTGCCTCCAATCAATCCGTAACAAGAAGCAGAGTCGAACCAG
ATTCTACGTAGATTCGAACCGGATTCATATCAAGAAACAAGAACCAGAAC
AAAAACTCCGAGAAAACCCCAGGAATGTTCGCAATCGTTATGCCAATACA
GCCAGTATCACATGGATAATTACCCTCAAAGGATCCAGACTGGAAAACCA
CCTAACGCGCGAAGAATCTAAAAAGTACACCGTTTTGAGCGATTTGTTCG
GAGGTAACCTCATGCCCCTACCCCAAACCGTCTTCACACTTATTACTGTA
TCTTCAGTCTTCGGGATTAACAAGAGTGAACGGACACCCAGTTTGTGCTC
AAGATAGGCAGCGAGAAAGACGCATCCCCGGAACGAATCCGTCGGCGTCC
AAGCAACCGTGTCGATACCTGAAGCTTGGCACGCGTGACTCAATCGCTCG
TGCTTCCGATCCAGTATATTTGGCGACATGAGAAATCTTCGGAGACTGCA
ACAGCAGCTGGTCGTGGTGCTGGCCACCATTGCTCGTCCTTGCTCCCTAC
CCCTAGTGCACGCGCTCCAACAACATGCCTCGACATTCCCTCGTTTCGGG
AGCCAGGTTGCTTCCACATCCTCTCGGATATGGCTACCAGCAGAAATAAC
ATCAAAGTGTATTCTTAGAACCGATGATGGGCAAGGCGCCGTTGAGGGCG
CAAGTTGTCCGGTTGGTAGACGCGGCGGTTTGGCTGCCTTGGCAGCTTTA
AGGGGTGGCGTTCGAGAGCGACGCCGGCGTGCGAAGAGGCCATTGGTGAG
CTTTGTTGCTCCTGGAATCGTTTGGTAAGTGAGTGAGCCTTGGAGCCTCG
GGAAAAGCCTCATTTGTGCACGTATACCGCAGCGTAGATCGGCGTACCTT
TGGAAAGATGCTGATAATGCGCCGGGTTCCCGAATTTCCTGCGGTGCTCT
ACCCTTGCGCCTGCAACTGCGTTTCAGAATCCTGGAGGTGATATTGGGTG
CCAACTGTGCTGTGCAGTGCAAACCAGTAGCAATCTGGGCGCACCGCGGC
AGTCCGCCTGATCGATGCGCACGCGACTTAATAGCCGGATAGTTTGGCCG
TCGTGTGGTCGGCAAGTTGTTGCTTTCAAACACCGCTGCGTCAGCACAGC
GCGTGAATTCACTTCCGCATAATTTGGACGAACGTGGAACAACAACTATA
AACCTCCTATCGGATGTGACACCTCAATGGTGACAGAGTCTGCAGTGTTC
TGATCCAGGGGTTCATTCATTGTTCCGTAATTATTTTGATGCATCTCGTG
TTCGCCGCATCACTATGCGTACTATGCACTCCAAGGTTGCTGACGGCCTA
CGTCGACTTTGTTCTGTGGTGGAAACTCATACCCTGTGCTGTCGGAGTGG
GTTCTTCTGCCGGACGTTCCTGCGGTGAGCATTCGTGTCTTGCATCCCCT
GCATGTCGGTGCGTCATTTGGTTGTCGCAGACTCGCCGAAAGTGCTGCTT
CTGCATTTTCCTCGCGTTTTCGCCTAGAATCTGAACCCGCACACCTCCGG
CACTAAAACTTTGTTCAAGGTACTCCTGGCTCTCCCTCTTTCGCTTTGCC
ACACCACTATTGTGGTGTGGGACGTTTGCGTCAAGTTACTCAGGTCGATC
TTAATCCAAAATTTTCTGTCCTCGTTGTTCTCCACTCCCGTACTTGAACT
CTAAGTTTCCATGCTTGACGTCATGTCACGTCACGTCACGTTACGTTGTT
TCTCCGGCAGGTGTAGGCCGAACTATCATGTCACACCCACGACAGTTTGC
AGTGTTTCACGTGCTCCTGGCGTTGGCGCTGGTGTCACACATGATGGTAA
TGGTGAGAGCAAGAAGCGGCTGCGCGACAACTAGCTGATTTGAACTTGTG
GCCAAGTTCCTTATTTTTGTCTGCCTTCTATACGAAGTATCTCCCTCGAA
CGGGCCCACACCGCAAGGCCCTGACCCGCGAACGCCCAGCTCATGCCAGG
CATGCATCAGTAGACAAGGCAATCGTGACTTGATGGGTTGTTTGCGCCGC
AGCGAATGCGTATATCTAGACTGTCATTTTGCACGACTTTCTACGTCCCT
TGCCAGGACTGCACGAGGTTCCATGAAAGCTACGCACGGTACAAATATGC
TGCTTCATAGACCTTTTTTATCGCAGAATTCTTGGCCTCGTTTTTCGCAT
TCATTATTTATTGCGACAAATAACTGGATTCACGCCGCTTGCGCCTCAGG
CGGCTGACCCTGGATTCATTCTGTCTGAGGCACTGCTACCAGTCCACGGT
ACCAAAAGCCTGGAAGGACCACAACCATGGTGCGACCGGTGTAAGGCTTT
CAAGCCTTTCAGGTGGGATATTTTTGTTGGTTTTTACTGCAGATAGCTTT
CAATGAAGGCCTGGATAAAATACGTGACCGTTGAGAGGGTTGGTCATGTC
TCATCCTACATCTCTGCTGTGGCTTGAAGTCGCTCGGTAACGCTATTTGA
CACCTGATAAAGTGGAAGTTTTTCCCTGTCTCAGTGAGTCGCACGACACA
GTGGTATACATGTCACCCCAACGTTAAGCACGTTGTACATCCGCGAGTGC
TACGACTGACCGTCACATTACCCTCTGCCCCCCGCACTCCCCTCTTGTCT
TCGCGTTCCCGTGACGGATATATCTGCGCGGCGGGACGCACGACACACAG
AGCACACCACTGCCGCCGCTGTGGTGCGTGCGTTGCAAGAATGGACCATC
ACTGCATCTACGCAGCCAACTGCGTCGGGGCCGGTAACCATAAGCAATTT
CTGCTTTTGCTCCTCTACTCGGGAGCCTGCGCGGCGCATGCTCTTGCTCT
CTTGAGACAGTTCTTCTGGTCCCGCTTTGCTTCACCAAACATTTCCCTGC
TCTGTGGTTATTCTCCATTCGCTAGCATTGCAGGCTTGGATCACAGGGTC
GGGGATGACGGGATTGGAGATCTTGAAGGATTTCCTTCTGGAATCCTGCT
GTACAGCGGGTTTGCGGCGGTGGTGTTGACATGGTTAATTGCTCTGTTCA
TCGCGCAGTGTCACGGCATCGCGGTCGAAGCCGGTACCGTCGATCGCATG
CAGCAAGCACGAAGTAGAGGAAGGACGCCCGAACAACAGACGTCAGTCAC
GAGAGACAAACAATCGTCCCTTGCACTGCTGGGGTCATTGTCGACCATGT
CAGCATCTCCGCTGCGCACTCGAAAGGCGGCAGACGATGCGCCAACCCTG
AGGCATACTGTTAGGGTTAATCGTCTCGAGATGGCAATTTCACAGGGCAC
TCATTCCTGGAGGGATTCCGACTCTAGCATTCTGCGTGCTTGGTGGAAGG
CATTGCGAGAGGAAATTCTAGGGGAAGGGTCGTGGATGATGTGGTTTCTA
CCGACGCGAGCTGAGCTCTCCCCTCAGGCAGCCAGTCGGGTCTACTGCGG
TGCCGATGAACCTCCGCTGAATTGAAAAATAACGATAAACAATAGGGTGA
AATCGGATTGACGCTTGCGGGTAAACGTATGTAAAAACAGACGTAGGAGG
AGGATGGCCAGGGCTACAGTGCTTGACGTAGAATGTTCTTTAGGCGGCAT
TGAAGTACACACGCTTCCCCGACTTCGCGAGGTCTAGATGGGCTTGCTGT
GTCCATCGTCTAGTTTTAGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1336:12413..16882- >mRNA_H-paniculata_contig1336.2103.1 ID=mRNA_H-paniculata_contig1336.2103.1|Name=mRNA_H-paniculata_contig1336.2103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at H-paniculata_contig1336:12413..16882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACACCCACGACAGTTTGCAGTGTTTCACGTGCTCCTGGCGTTGGC
GCTGGTGTCACACATGATGGTAATGATGTCACACCCACGACAGTTTGCAG
TGTTTCACGTGCTCCTGGCGTTGGCGCTGGTGTCACACATGATGGTAATG
GCGGCTGACCCTGGATTCATTCTGTCTGAGGCACTGCTACCAGTCCACGG
TACCAAAAGCCTGGAAGGACCACAACCATGGTGCGACCGGTGTAAGGCTT
TCAAGCCTTTCAGGCGGCTGACCCTGGATTCATTCTGTCTGAGGCACTGC
TACCAGTCCACGGTACCAAAAGCCTGGAAGGACCACAACCATGGTGCGAC
CGGTGTAAGGCTTTCAAGCCTTTCAGAGCACACCACTGCCGCCGCTGTGG
TGCGTGCGTTGCAAGAATGGACCATCACTGCATCTACGCAGCCAACTGCG
TCGGGGCCGGTAACCATAAGCAATTTCTGCTTTTGCTCCTCTACTCGGGA
GCCTGCGCGGCGCATGCTCTTGCTCTCTTGAGACAGTTCTTCTGGTCCCG
CTTTGCTTCACCAAACATTTCCCTGCTCTGTGGTTATTCTCCATTCGCTA
GCATTGCAGGCTTGGATCACAGGGTCGGGGATGACGGGATTGGAGATCTT
GAAGGATTTCCTTCTGGAATCCTGCTGTACAGCGGGTTTGCGGCGGTGGT
GTTGACATGGTTAATTGCTCTGTTCATCGCGCAGTGTCACGGCATCGCGG
TCGAAGCCGGTACCGTCGATCGCATGCAGCAAGCACGAAGTAGAGGAAGG
ACGCCCGAACAACAGACGTCAGTCACGAGAGACAAACAATCGTCCCTTGC
ACTGCTGGGGTCATTGTCGACCATGTCAGCATCTCCGCTGCGCACTCGAA
AGGCGGCAGACGATGCGCCAACCCTGAGGCATACTGTTAGGGTTAATCGT
CTCGAGATGGCAATTTCACAGGGCACTCATTCCTGGAGGGATTCCGACTC
TAGCATTCTGCGTGCTTGGTGGAAGGCATTGCGAGAGGAAATTCTAGGGG
AAGGGTCGTGGATGATGTGGTTTCTACCGACGCGAGCTGAGCTCTCCCCT
CAGGCAGCCAGTCGGGTCTACTGCGGTGCCGATGAACCTCCGCTGAATTG
AAGCACACCACTGCCGCCGCTGTGGTGCGTGCGTTGCAAGAATGGACCAT
CACTGCATCTACGCAGCCAACTGCGTCGGGGCCGGTAACCATAAGCAATT
TCTGCTTTTGCTCCTCTACTCGGGAGCCTGCGCGGCGCATGCTCTTGCTC
TCTTGAGACAGTTCTTCTGGTCCCGCTTTGCTTCACCAAACATTTCCCTG
CTCTGTGGTTATTCTCCATTCGCTAGCATTGCAGGCTTGGATCACAGGGT
CGGGGATGACGGGATTGGAGATCTTGAAGGATTTCCTTCTGGAATCCTGC
TGTACAGCGGGTTTGCGGCGGTGGTGTTGACATGGTTAATTGCTCTGTTC
ATCGCGCAGTGTCACGGCATCGCGGTCGAAGCCGGTACCGTCGATCGCAT
GCAGCAAGCACGAAGTAGAGGAAGGACGCCCGAACAACAGACGTCAGTCA
CGAGAGACAAACAATCGTCCCTTGCACTGCTGGGGTCATTGTCGACCATG
TCAGCATCTCCGCTGCGCACTCGAAAGGCGGCAGACGATGCGCCAACCCT
GAGGCATACTGTTAGGGTTAATCGTCTCGAGATGGCAATTTCACAGGGCA
CTCATTCCTGGAGGGATTCCGACTCTAGCATTCTGCGTGCTTGGTGGAAG
GCATTGCGAGAGGAAATTCTAGGGGAAGGGTCGTGGATGATGTGGTTTCT
ACCGACGCGAGCTGAGCTCTCCCCTCAGGCAGCCAGTCGGGTCTACTGCG
GTGCCGATGAACCTCCGCTGAATTGA back to top
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