mRNA_H-paniculata_contig13169.1982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13169.1982.1
Unique NamemRNA_H-paniculata_contig13169.1982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13169.1982.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.010e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 VVRGGETLHCGPSSTPLQQGTVVTLRDVFYRWPVRRKAMNPV 126
            VVR GE LH GPS  P++ GT+VTLRD F++WPVRRKA N V
Sbjct:  136 VVREGEVLHFGPSRAPVRAGTIVTLRDAFFKWPVRRKAANEV 177
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BLAST of mRNA_H-paniculata_contig13169.1982.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 VVRGGETLHCGPSSTPLQQGTVVTLRDVFYRWPVRRKAMNPV 126
            VVR GE LH GPS  P + GT+VTLRD F++WPVRRKA N V
Sbjct:   87 VVREGEVLHFGPSRAPARAGTIVTLRDAFFKWPVRRKAANEV 128
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BLAST of mRNA_H-paniculata_contig13169.1982.1 vs. uniprot
Match: A0A1Y2EVX0_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVX0_9BASI)

HSP 1 Score: 50.8 bits (120), Expect = 5.480e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VVRGGETLHCGPSSTP-LQQGTVVTLRDVFYRWPVRRKAMN 120
            V RGGE L+ G +STP   +GT V +RD+FY+WPVRRK ++
Sbjct:  141 VARGGERLYEGVASTPRATEGTTVWVRDIFYKWPVRRKPLS 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13169.1982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G9D8_ECTSI7.010e-1166.67MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWV7_9PHAE1.310e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2EVX0_9BASI5.480e-656.10Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13169contigH-paniculata_contig13169:6294..6443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog2880.D7G9D8
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1977@2759
Ec32 ortholog descriptionMutL protein homolog 3
Ec32 orthologEc-28_000540.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.3871887-CDS-H-paniculata_contig13169:6293..64431622929040.3871887-CDS-H-paniculata_contig13169:6293..6443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13169 6294..6443 +
1691480709.4768395-CDS-H-paniculata_contig13169:6293..64431691480709.4768395-CDS-H-paniculata_contig13169:6293..6443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13169 6294..6443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13169.1982.1prot_H-paniculata_contig13169.1982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13169 6294..6443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13169.1982.1

>prot_H-paniculata_contig13169.1982.1 ID=prot_H-paniculata_contig13169.1982.1|Name=mRNA_H-paniculata_contig13169.1982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
VVRGGETLHCGPSSTPLQQGTVVTLRDVFYRWPVRRKAMNPVRTVQCKRE
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mRNA from alignment at H-paniculata_contig13169:6294..6443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13169.1982.1 ID=mRNA_H-paniculata_contig13169.1982.1|Name=mRNA_H-paniculata_contig13169.1982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig13169:6294..6443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTCGAGGTGGGGAAACGTTGCACTGTGGGCCCTCAAGCACGCCCCT
GCAACAGGGCACCGTGGTGACCTTGCGGGATGTTTTCTACAGGTGGCCCG
TGCGCCGCAAGGCCATGAACCCGGTACGTACTGTTCAGTGTAAACGTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13169:6294..6443+

>mRNA_H-paniculata_contig13169.1982.1 ID=mRNA_H-paniculata_contig13169.1982.1|Name=mRNA_H-paniculata_contig13169.1982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig13169:6294..6443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTCGAGGTGGGGAAACGTTGCACTGTGGGCCCTCAAGCACGCCCCT
GCAACAGGGCACCGTGGTGACCTTGCGGGATGTTTTCTACAGGTGGCCCG
TGCGCCGCAAGGCCATGAACCCGGTACGTACTGTTCAGTGTAAACGTGAA
GTGGTTCGAGGTGGGGAAACGTTGCACTGTGGGCCCTCAAGCACGCCCCT
GCAACAGGGCACCGTGGTGACCTTGCGGGATGTTTTCTACAGGTGGCCCG
TGCGCCGCAAGGCCATGAACCCGGTACGTACTGTTCAGTGTAAACGTGAA
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