mRNA_H-paniculata_contig13091.1934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13091.1934.1
Unique NamemRNA_H-paniculata_contig13091.1934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13091.1934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13091contigH-paniculata_contig13091:4583..5132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.1557624-UTR-H-paniculata_contig13091:4582..47121622929035.1557624-UTR-H-paniculata_contig13091:4582..4712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13091 4583..4712 +
1691480707.4119024-UTR-H-paniculata_contig13091:4582..47121691480707.4119024-UTR-H-paniculata_contig13091:4582..4712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13091 4583..4712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.1701083-CDS-H-paniculata_contig13091:4712..51321622929035.1701083-CDS-H-paniculata_contig13091:4712..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13091 4713..5132 +
1691480707.4230604-CDS-H-paniculata_contig13091:4712..51321691480707.4230604-CDS-H-paniculata_contig13091:4712..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13091 4713..5132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13091.1934.1prot_H-paniculata_contig13091.1934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13091 4713..5132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13091.1934.1

>prot_H-paniculata_contig13091.1934.1 ID=prot_H-paniculata_contig13091.1934.1|Name=mRNA_H-paniculata_contig13091.1934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MTEGRDMPFALLMGCVNCVPLTSLWGKGASLWPKPDPTSPWLYANSSCGS
PVGQENVSTVFSLLARWSKFRTGTERLELLSVSSNVASFGVVSDVKKDTE
LLVSYPLPGNDVHRNESDDEKSKEELDDAEEDEPKAGLQA
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mRNA from alignment at H-paniculata_contig13091:4583..5132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13091.1934.1 ID=mRNA_H-paniculata_contig13091.1934.1|Name=mRNA_H-paniculata_contig13091.1934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=550bp|location=Sequence derived from alignment at H-paniculata_contig13091:4583..5132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATCGGGAACACATGGATACGGACTTTTCGCTGCACTGGATCTTGA
CGTCAGCTACGCTGGCTTGCCGGTGGAGGGATCTCTCCAAGTATTCGACA
ACGTGGGCCAGGTTCTGAAGGAGTTGAAGCATGACGGAGGGCCGAGATAT
GCCATTTGCATTACTGATGGGCTGCGTAAACTGTGTGCCGCTAACGAGTC
TGTGGGGGAAGGGGGCATCGTTATGGCCCAAGCCAGACCCGACCAGCCCA
TGGCTCTACGCCAATTCGTCGTGTGGTTCCCCTGTCGGCCAAGAGAACGT
GTCGACAGTCTTCTCATTACTCGCACGTTGGTCGAAATTTCGTACCGGCA
CAGAGAGGCTTGAGTTGCTTAGCGTTTCCAGTAATGTTGCGTCGTTCGGC
GTAGTCTCAGACGTGAAGAAGGATACTGAGCTGTTAGTTTCGTACCCGTT
GCCGGGAAACGACGTCCATCGGAATGAGTCAGATGATGAGAAGAGCAAAG
AAGAGTTGGATGATGCGGAGGAAGATGAACCAAAGGCGGGTCTGCAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13091:4583..5132+

>mRNA_H-paniculata_contig13091.1934.1 ID=mRNA_H-paniculata_contig13091.1934.1|Name=mRNA_H-paniculata_contig13091.1934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig13091:4583..5132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGAGGGCCGAGATATGCCATTTGCATTACTGATGGGCTGCGTAAA
CTGTGTGCCGCTAACGAGTCTGTGGGGGAAGGGGGCATCGTTATGGCCCA
AGCCAGACCCGACCAGCCCATGGCTCTACGCCAATTCGTCGTGTGGTTCC
CCTGTCGGCCAAGAGAACGTGTCGACAGTCTTCTCATTACTCGCACGTTG
GTCGAAATTTCGTACCGGCACAGAGAGGCTTGAGTTGCTTAGCGTTTCCA
GTAATGTTGCGTCGTTCGGCGTAGTCTCAGACGTGAAGAAGGATACTGAG
CTGTTAGTTTCGTACCCGTTGCCGGGAAACGACGTCCATCGGAATGAGTC
AGATGATGAGAAGAGCAAAGAAGAGTTGGATGATGCGGAGGAAGATGAAC
CAAAGGCGGGTCTGCAAGCGATGACGGAGGGCCGAGATATGCCATTTGCA
TTACTGATGGGCTGCGTAAACTGTGTGCCGCTAACGAGTCTGTGGGGGAA
GGGGGCATCGTTATGGCCCAAGCCAGACCCGACCAGCCCATGGCTCTACG
CCAATTCGTCGTGTGGTTCCCCTGTCGGCCAAGAGAACGTGTCGACAGTC
TTCTCATTACTCGCACGTTGGTCGAAATTTCGTACCGGCACAGAGAGGCT
TGAGTTGCTTAGCGTTTCCAGTAATGTTGCGTCGTTCGGCGTAGTCTCAG
ACGTGAAGAAGGATACTGAGCTGTTAGTTTCGTACCCGTTGCCGGGAAAC
GACGTCCATCGGAATGAGTCAGATGATGAGAAGAGCAAAGAAGAGTTGGA
TGATGCGGAGGAAGATGAACCAAAGGCGGGTCTGCAAGCG
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