mRNA_H-paniculata_contig13038.1903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13038.1903.1
Unique NamemRNA_H-paniculata_contig13038.1903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13038.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13038contigH-paniculata_contig13038:2726..3361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13038.1903.1prot_H-paniculata_contig13038.1903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13038 2850..3246 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.6916876-UTR-H-paniculata_contig13038:2725..28491622929029.6916876-UTR-H-paniculata_contig13038:2725..2849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13038 2726..2849 +
1691480705.6386409-UTR-H-paniculata_contig13038:2725..28491691480705.6386409-UTR-H-paniculata_contig13038:2725..2849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13038 2726..2849 +
1622929029.7291882-UTR-H-paniculata_contig13038:3246..33611622929029.7291882-UTR-H-paniculata_contig13038:3246..3361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13038 3247..3361 +
1691480705.6810076-UTR-H-paniculata_contig13038:3246..33611691480705.6810076-UTR-H-paniculata_contig13038:3246..3361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13038 3247..3361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.704839-CDS-H-paniculata_contig13038:2849..28731622929029.704839-CDS-H-paniculata_contig13038:2849..2873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13038 2850..2873 +
1691480705.6501067-CDS-H-paniculata_contig13038:2849..28731691480705.6501067-CDS-H-paniculata_contig13038:2849..2873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13038 2850..2873 +
1622929029.7190354-CDS-H-paniculata_contig13038:2919..32461622929029.7190354-CDS-H-paniculata_contig13038:2919..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13038 2920..3246 +
1691480705.6671116-CDS-H-paniculata_contig13038:2919..32461691480705.6671116-CDS-H-paniculata_contig13038:2919..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13038 2920..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13038.1903.1

>prot_H-paniculata_contig13038.1903.1 ID=prot_H-paniculata_contig13038.1903.1|Name=mRNA_H-paniculata_contig13038.1903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAPRCERMFQRGDETWETAWNVIPYCIQTRTNLRPFTVLWGDEASSTTTQ
CQSLRISRAETSTFRFTSVSALDHQCEHPILRGLIKLQREDEGEGLIVDC
TRATAFTCWVVSRRGR*
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mRNA from alignment at H-paniculata_contig13038:2726..3361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13038.1903.1 ID=mRNA_H-paniculata_contig13038.1903.1|Name=mRNA_H-paniculata_contig13038.1903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig13038:2726..3361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGATAGTACAGCAGTATTAGTACCCTGCAGTTTCCGCCCGTCACAAGT
CTCAACTTCCGATATAGGCAGGATCTAGGTGCTTGAGATGAGGAGTAATA
TGGACGAGTCAGATAGCACATGTAATGGCGCCGCGCTGCGAGCGGATGGT
CCAAATTTCTCCAAATGTACATCAACTACAAAATATCATCAGAGTTCCAA
CGCGGCGACGAGACTTGGGAGACAGCTTGGAATGTCATCCCGTATTGCAT
CCAAACCAGGACCAATCTCCGACCATTTACTGTACTTTGGGGCGACGAGG
CATCATCGACCACTACTCAATGCCAATCGCTGCGAATATCGAGAGCAGAA
ACATCCACTTTTCGTTTTACGTCAGTTTCTGCGCTCGATCACCAGTGCGA
ACATCCTATTCTAAGAGGACTTATTAAGTTGCAGCGCGAAGATGAAGGTG
AAGGTCTCATCGTGGACTGTACGAGGGCTACAGCTTTCACTTGTTGGGTT
GTTTCGCGGAGAGGGCGATAACGGCAATGGTGGAGGTCATACTAGCAAAG
GGTCGCAACACTGCCCGCACATTCGGATGGGAGGCGACACTCCTGAGCCG
TCGCCTCGAACGACGCTTGACAGAGACAGCCCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13038:2726..3361+

>mRNA_H-paniculata_contig13038.1903.1 ID=mRNA_H-paniculata_contig13038.1903.1|Name=mRNA_H-paniculata_contig13038.1903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig13038:2726..3361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGCGCTGCGAGCGGATGATGGCGCCGCGCTGCGAGCGGATGTT
CCAACGCGGCGACGAGACTTGGGAGACAGCTTGGAATGTCATCCCGTATT
GCATCCAAACCAGGACCAATCTCCGACCATTTACTGTACTTTGGGGCGAC
GAGGCATCATCGACCACTACTCAATGCCAATCGCTGCGAATATCGAGAGC
AGAAACATCCACTTTTCGTTTTACGTCAGTTTCTGCGCTCGATCACCAGT
GCGAACATCCTATTCTAAGAGGACTTATTAAGTTGCAGCGCGAAGATGAA
GGTGAAGGTCTCATCGTGGACTGTACGAGGGCTACAGCTTTCACTTGTTG
GGTTGTTTCGCGGAGAGGGCGATAATTCCAACGCGGCGACGAGACTTGGG
AGACAGCTTGGAATGTCATCCCGTATTGCATCCAAACCAGGACCAATCTC
CGACCATTTACTGTACTTTGGGGCGACGAGGCATCATCGACCACTACTCA
ATGCCAATCGCTGCGAATATCGAGAGCAGAAACATCCACTTTTCGTTTTA
CGTCAGTTTCTGCGCTCGATCACCAGTGCGAACATCCTATTCTAAGAGGA
CTTATTAAGTTGCAGCGCGAAGATGAAGGTGAAGGTCTCATCGTGGACTG
TACGAGGGCTACAGCTTTCACTTGTTGGGTTGTTTCGCGGAGAGGGCGAT
AA
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