mRNA_H-paniculata_contig1303.1900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1303.1900.1
Unique NamemRNA_H-paniculata_contig1303.1900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1303.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1303contigH-paniculata_contig1303:18962..24674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-07_000570.1
Exons5
Model size486
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1303.1900.1prot_H-paniculata_contig1303.1900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1303 18962..24674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.5215285-CDS-H-paniculata_contig1303:18961..190481622929029.5215285-CDS-H-paniculata_contig1303:18961..19048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 18962..19048 +
1691480705.5325496-CDS-H-paniculata_contig1303:18961..190481691480705.5325496-CDS-H-paniculata_contig1303:18961..19048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 18962..19048 +
1622929029.5376143-CDS-H-paniculata_contig1303:20726..208481622929029.5376143-CDS-H-paniculata_contig1303:20726..20848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 20727..20848 +
1691480705.543323-CDS-H-paniculata_contig1303:20726..208481691480705.543323-CDS-H-paniculata_contig1303:20726..20848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 20727..20848 +
1622929029.5502744-CDS-H-paniculata_contig1303:21226..212861622929029.5502744-CDS-H-paniculata_contig1303:21226..21286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 21227..21286 +
1691480705.551949-CDS-H-paniculata_contig1303:21226..212861691480705.551949-CDS-H-paniculata_contig1303:21226..21286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 21227..21286 +
1622929029.5610757-CDS-H-paniculata_contig1303:23484..236531622929029.5610757-CDS-H-paniculata_contig1303:23484..23653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 23485..23653 +
1691480705.5604322-CDS-H-paniculata_contig1303:23484..236531691480705.5604322-CDS-H-paniculata_contig1303:23484..23653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 23485..23653 +
1622929029.5727751-CDS-H-paniculata_contig1303:24626..246741622929029.5727751-CDS-H-paniculata_contig1303:24626..24674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 24627..24674 +
1691480705.5690315-CDS-H-paniculata_contig1303:24626..246741691480705.5690315-CDS-H-paniculata_contig1303:24626..24674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1303 24627..24674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1303.1900.1

>prot_H-paniculata_contig1303.1900.1 ID=prot_H-paniculata_contig1303.1900.1|Name=mRNA_H-paniculata_contig1303.1900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MSGTMACRCWLESDPEKQALMMVLAGTPSIYSPGASPSGSLSPRFFSRSG
VLKQYSRGASPSRSGRNTPLSSSNHERRGTNSEGLLVPSRLPPQSPEAGE
NSSAPGGGSRVTRAEAKSTRETCPVCSAVFGDVEALVRHVDRFHIDAQKR
TSVIGKGEDHV*
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mRNA from alignment at H-paniculata_contig1303:18962..24674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1303.1900.1 ID=mRNA_H-paniculata_contig1303.1900.1|Name=mRNA_H-paniculata_contig1303.1900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5713bp|location=Sequence derived from alignment at H-paniculata_contig1303:18962..24674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAACCATGGCCTGTCGCTGTTGGTTGGAATCGGACCCAGAGAA
GCAAGCTCTCATGATGGTCTTGGCCGGCACCCCTTCTGTGAGCAAAAGCA
TATCGAAACGAGAGCAGATAATCCAACGCCATTATTAATTGTGTTTTCAG
GGGGCACCACCCCCCCGTATTAATATATTTTTTGCTGATAAGTGTACATA
ACCGACGTTTAAGGACAGCTGTATAACCTCGACATGGGGAGAATCAAGTT
GAGCTATTATATGACCTTCGGATATGTTATCATTGTGAAAGTGGAATATG
ACAGTAACACCTCCAGTTAAAAGAGGCCTCTTGGAATTTCCACCTCGGTA
TTAGGGCTAGCGGGTTCTCCTTTAGCCAGGCGCTGAGTTAGAGCTACACG
CATTCCCGGGCTATTGTTTCTTGACTAGATCGGGCTAAGAACTATATTAG
AGATTGCGACCCTAATGGCGTTTTTTCTAGAGGTGTTCTCAGTAGTAATA
CCCAGGTAAAAATACCGTGGTATTGCGCGGTATTTGGTATTCGCTATTCC
GTACCGATACCGTGGAAAAGATGACTTCCCGTTTACCGTTACCGTGCACG
GCACAGCCAGTGTCAGAGCCTTTTCCCGTTTACCGTATCGTGAAACTCCA
CTACTGTACAGATACCGTGCCTTCAAACTTGAAATTTATAAGTCCTGGGA
ATGAGCTCTCGGAATACATGATTCGCCTGCTTGTGGAACTCCCCGTATAC
GCCGTTTACTACACGCATGGGTTTTGCGTCTGTCTTTTGTATCTTGCGCT
TGGGCATGACTTGGGCACCGAAATACTGTGTCAGCTGCCAGATACCATAC
CGCATGATACCGAGAAGATAAAATATCGTACTGTACCGCTCCGTACCGTG
CTACCAGTATGCCGAATAGCGCTTACGGACACGACACCCAGGAATCATTT
ACCGTATCATATATTAATCTTTAAAATACCATTACGTAGAACAAACAACC
CAGGTTTTCCCCCATGTCTTGCGGCCTCCCTAAACATCTGATAAAAATGG
TAGAAATATGGGAGCTACCCTGCAAGTACTGTCCAGTTTTGTTTTTTGCG
GGCTACGAAGTCCTCTCGTTGTGCTTCTCAGCTACATGCATTTTTTTGCT
TGCCACCTGTCTGCCCTTAGTCGACGGATTGATCGCTTAATAATGTTGAA
GGGGGATCAAAGGAAACGGAATCATGGTGTCTCCCCTGCCCAGCACATCT
TGGTACCTTCGCTCATGGCAAAACACCGTTAAAAAAGTACTCGAGTACCC
CATTCGTAATTGGAAACCACTGATGAGTGAAACATGATGGCCATGACCCA
TTGTCCATGACTACGGGCTAAATAATTTCACATTTCAAACACATTTACGT
TGTAAACCTACTATTTACAAACGCGGTGGGAGCTTACCATGTACATGTAC
AAACAGATGAGGCCCACAACAAGATATTTCTCTTGTGCGTAGTATTATTA
TTACTATTCTAATTATGATGTACTATTTACATTTTCTGTCGGATCCGGAC
AGACAATGCTTGAAGGTTAACTGGCAATTTTGATAACCCTGTTCATCAGA
CGTCAACCAAATGGTGTTATTTTGTTTTATTAAAATATGGATGTATTTAT
GAACATTTTTAATAGGGTCTGGGGTTATACTCATGTGCCTGTTTGTACTA
CGTCAGCTCATGTATACCCCCCCCCCCTCCTACCCCCTCCTACCCCCGAC
CTCTCACGCCCGCAGATCTACTCACCTGGAGCGTCCCCTTCTGGATCTTT
GTCTCCAAGATTTTTCTCTAGGAGCGGTGTGCTGAAACAATATTCTCGGG
GTGCTAGCCCGAGCCGAAGCGGACGCAACACGCCTCTGTGAGATACGGGA
CCTCTCTTGAACCACAGAACAACGATACCAACGTAGTTGTCATACTCCAT
GCTATTATCATTCAGTAAAACACCCCGGGGTAAAATCGTTCTTCAAACTC
GATTTCTCGAGAGGGACAAAGATCGTGCACCGTCGGAAGAACACGTCTAT
CTCATGGCATATATTTCGTAATGGGATCTTTCCAATGGCATAACGGTACC
GCCCTTGAACGGAAGTACCCTCCCCTTCAACGACATGTTTTCTACACAAG
GGTGATGCCCGTGAATCTACGCCAAAGGACTACGCTTTCTATCTTGTACG
CAACGCTGATGGCCGTTTTTTTCTCGTTAAATTTGTTGGTTTTATGTTTT
TCGTTTGACTTCAAGGTCATCTTCGAATCATGAGCGTCGAGGGACGAACT
CGGAGGGGTTGCTCGTCCCATCCAGGTCAGACAATCTATTCAACCTCATG
TGGCTAACGAGTAGAGCCGTATCTTGGTGGAGAGGGGGGGAGGTTACTGA
TTTTGAACGCATACCCCAGTCAGACGCCCAGTGACCTCGTTGCATTCCTG
CAACGCCGGACAGAGCTATGCCGGGTTGTCACCGACCAGGCTGTGTTTTT
GCAAAGGTTTTGCTGCTGTACCAATTGATATATAGTTGTAATCTATCATC
CTTCTTTAAACGCGGTATCGCCATGAGCTTATTAGGGATCCTGAGTCGCC
AAATGTCGCATATTTGGCAGGAGTGATTATACCCCAAGTACCGCACGGGC
TTTGATCTTCACGCGCGTACTCGTGTGTGAGTAACGCTTGCTGAGGGTAA
ACAAACAGGAGGCGAGGGGAGGGGGGGGGGGGGGGTCTGGAAGATTTTCC
TTGTCAGAGCAGGACCTTCAACACGATTCCGAAATTGAGGATGAACTTGA
TCGTTGAGGGTGAAAGACTTTCCATTAGTTTCACCAACAACGATGGCTAA
ATCATGCTAAAACCTCGAGGACATCGTGAACGTATGAAGTGTGACGGGGT
CCACAGTTTCACATTGCGTGTTCGGCACTCCTGGTCGCTTCTGCTGTGTA
GAGGTAAGAAAAAAAAAGTAGTGTGACTTGGCTCAGCTCTTCTGAATGGT
GGATCGCTTTGAGCTTCCCGTCATTTTCCCGTGGATATTTGAAGCGATTT
TGAAAAGCAATGGTGGAGCTGCCATATCTTCGATGGGGGAAAAAATGTAG
ATACAAGCATATGCATAAATTTTATGTGAACCAAATAACATTTGGCTCAA
GTTACTTTACCCCTGAAGACCCGATCTCCTCGCCCCCCTCCTCCCCGTAC
CCGTTTTTTTTGGGGAGAGAGGAAAGGCCGCAAAGCATAGAAGAAGTAGA
TGTCGGTGGGATTTAGGAGCGCTGTTCTTATCCGTGGGATGAAAAATGTA
GTCCAGTATCTCGATATATTAACGATATAAATCCATGGGAAGTTGATGTG
TTCGATAGCTATCAAAAGAAGATCGACGTTTCACAGTAATAATCAGTGTA
CAACAAATTGTAGCTGAATCGTATCAATCCTGAAAACACTCGAAACTACC
GTCAGTCCTCCAGAAACCCAACTTCCCCAGCCAGCCCTCTAAGGGCTGTT
TAGCATTGTTTGTGACACGTCGTGATTGATGCACATGATTCACATCGTGC
TTTCGGTGTTTTTCGCCATTAATCACGAATGAGTGCTCTCGACAAAAAAA
GTAATTGGCATTAGGCCATCACAATTGAGGGGAGAATTAGTGTTAGACTA
GATGGAATTTTCCCCCTAGGGGGGATAAATTTTACATGTTCTTTCTCCTC
CCGTGAGGACAATATTGCACCCACAATTTTCTTCTCCCAGACGAACATAA
AATAATTGGATTACTGTTCGCGAGGAAAACAAAGAAGTGTTCGCCTGAGC
TTCAGAATGTGCTGGGTAAATGATGACACATAGAATAAAGGATGACCCCC
GTTTATTCGTTTTACCGTAATTCGGAGCTGTCGTAGATGGCTCGTCTGAG
GCACATGTATAGAATACACACTCTCATGGTGAACCTTGAAGCGCCTGGTT
TTTCACTTTTTTCGTCGCGAACGCTCCAAGCGATAACCCGTATCCGTTCG
TCCGGGGGGTTGCAATACTGTATCATCTTTTTTGTTTTCATTCCCAGAAT
ACCAGAGGGTGATCCCTTCTCTAATATTTATGCTGGGGATAGTGTTCATC
TTCGTACGCCAGTTTTGTCTTTTCCCGACCAAAGTATTCGTGATCCCGTA
GGCAGGTGCCTCGGGGGAGACTACTAGCAGCTCAGGTGCCTATGTACCGC
TGTCAAACATGGTCAGGAATGAGACCAACATCCACTTAAACCCTTCAGAC
GCCTCCTAGATTTGTCCAGTACATGGGCTACCCTATTCATTTGGGCTTTG
GTCTGAAATTGCATCATCCTCTATCCAACGTTGTTGTAGGGCAACAATTC
GTCAGGTCTTATCCCAGGTATTGAGGCTGATGTAATCCTTCACAGCTCAT
GCTAAAGGTATATACCCGGAGTGCGTTCTAGAGAACGCGGCTGACCATTG
AGCCCAATTTGACCCGCCTTGATCGCTGAACGAGTCATTTTGGTTGTCGC
GCACTGCCTAAAACTTGTCCCAGGCTACCACCGCAGTCGCCTGAAGCCGG
CGAAAATAGTTCAGCGCCAGGCGGTGGCAGTAGGGTCACCCGAGCAGAGG
CTAAGTCCACGAGAGAAACATGTCCGGTGTGTAGCGCCGTGTTTGGAGAC
GTCGAAGCTCTTGTCCGGCATGTGGACCGCTTTCACATCGACGTGAGAGG
GCTTTTTAGAGAGACAAGATTCACGGGGGGTGTACTTCTTCGTGTAGGGA
TTATCTAATGTGTGTGCTATAAAGCTGTGCATATGCTTGTAGAACAAGGT
ACGTTGACAACACAGGCCAACGGTAGGATGCACACACAATACTGTTGTAA
GGGGTAGACCTTCCTAGCAGATGGACAATACTAAGTGCCACTGATCTTTC
CTACAGCAGCCACGTTTTTGAGCGGACATTCTGAAATTCTAAGACGTGAA
TGGATTCTTTTTCATGGTCGAAGGTTAGAGTAACGTTTTTCACAACTAAA
AATTCCTCAGGGAACACGGCAATTACCAATGCGGGTCTGATAATCCGTTG
GATGCGTGTCGGGAATTTGGAGTATGGAAAAATCGACGCTTCGCATCTGC
CCGAACCTTACAGATTTCAAAACAGTATTGCATCGAAGGACTAGAGTAGA
GCTGGTCGACGACATGTTTGAGGTAGAGTCCAAGATCTGTTGTTAAATGA
TAGATGGAAATGGGCAGCAAGTCGAGTCTTCGAATCCATTACGGTAGAGA
GCATCGGAAATATAGCAGCGAGAAATCGGGGAGAAAGTTGTGCCGAAAAT
CGGAAATTTGCTTGCAGGAATCGGAACCGTGCTGAGAAAAGGAAATTGTG
TAAGAAATCGACTCTTTTTAATAAGGACAAATACTATAACTCATAATTAT
TGAATAAAATTGAACAACCTGAAGAACAATCGGAACCCTTCGTGCAAGAT
ACTGAAAACCGTGGATCATGTCCTATGCGGTGTACTCCTGCCAGAACATG
CGAAGTAACGAAGACTGCAGAGAAATACAGCGAGTCTAGAAGTACAACAC
ACAGAATCTATGTCTCTTAACTGTCTTCAACAATAGGGACACACGATGTA
CACTTCGGCGTCAAACCGGCCCCCATACCCTGCTCACCCATGCGTTTGGC
GCGCTGCTTAATCAGGCACAGAAGAGGACATCGGTGATTGGCAAGGGGGA
GGATCATGTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1303:18962..24674+

>mRNA_H-paniculata_contig1303.1900.1 ID=mRNA_H-paniculata_contig1303.1900.1|Name=mRNA_H-paniculata_contig1303.1900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1303:18962..24674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAACCATGGCCTGTCGCTGTTGGTTGGAATCGGACCCAGAGAA
GCAAGCTCTCATGATGGTCTTGGCCGGCACCCCTTCTATGTCGGGAACCA
TGGCCTGTCGCTGTTGGTTGGAATCGGACCCAGAGAAGCAAGCTCTCATG
ATGGTCTTGGCCGGCACCCCTTCTATCTACTCACCTGGAGCGTCCCCTTC
TGGATCTTTGTCTCCAAGATTTTTCTCTAGGAGCGGTGTGCTGAAACAAT
ATTCTCGGGGTGCTAGCCCGAGCCGAAGCGGACGCAACACGCCTCTATCT
ACTCACCTGGAGCGTCCCCTTCTGGATCTTTGTCTCCAAGATTTTTCTCT
AGGAGCGGTGTGCTGAAACAATATTCTCGGGGTGCTAGCCCGAGCCGAAG
CGGACGCAACACGCCTCTGTCATCTTCGAATCATGAGCGTCGAGGGACGA
ACTCGGAGGGGTTGCTCGTCCCATCCAGGTCATCTTCGAATCATGAGCGT
CGAGGGACGAACTCGGAGGGGTTGCTCGTCCCATCCAGGCTACCACCGCA
GTCGCCTGAAGCCGGCGAAAATAGTTCAGCGCCAGGCGGTGGCAGTAGGG
TCACCCGAGCAGAGGCTAAGTCCACGAGAGAAACATGTCCGGTGTGTAGC
GCCGTGTTTGGAGACGTCGAAGCTCTTGTCCGGCATGTGGACCGCTTTCA
CATCGACGCTACCACCGCAGTCGCCTGAAGCCGGCGAAAATAGTTCAGCG
CCAGGCGGTGGCAGTAGGGTCACCCGAGCAGAGGCTAAGTCCACGAGAGA
AACATGTCCGGTGTGTAGCGCCGTGTTTGGAGACGTCGAAGCTCTTGTCC
GGCATGTGGACCGCTTTCACATCGACGCACAGAAGAGGACATCGGTGATT
GGCAAGGGGGAGGATCATGTCTAAGCACAGAAGAGGACATCGGTGATTGG
CAAGGGGGAGGATCATGTCTAA
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