mRNA_H-paniculata_contig12987.1877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12987.1877.1
Unique NamemRNA_H-paniculata_contig12987.1877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12987.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12987contigH-paniculata_contig12987:4574..5219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size646
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12987.1877.1prot_H-paniculata_contig12987.1877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12987 4746..5081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.973836-UTR-H-paniculata_contig12987:4573..47451622929024.973836-UTR-H-paniculata_contig12987:4573..4745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12987 4574..4745 +
1691480703.9872408-UTR-H-paniculata_contig12987:4573..47451691480703.9872408-UTR-H-paniculata_contig12987:4573..4745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12987 4574..4745 +
1622929025.0034504-UTR-H-paniculata_contig12987:5081..52191622929025.0034504-UTR-H-paniculata_contig12987:5081..5219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12987 5082..5219 +
1691480704.0131094-UTR-H-paniculata_contig12987:5081..52191691480704.0131094-UTR-H-paniculata_contig12987:5081..5219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12987 5082..5219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.9886217-CDS-H-paniculata_contig12987:4745..50811622929024.9886217-CDS-H-paniculata_contig12987:4745..5081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12987 4746..5081 +
1691480704.004212-CDS-H-paniculata_contig12987:4745..50811691480704.004212-CDS-H-paniculata_contig12987:4745..5081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12987 4746..5081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12987.1877.1

>prot_H-paniculata_contig12987.1877.1 ID=prot_H-paniculata_contig12987.1877.1|Name=mRNA_H-paniculata_contig12987.1877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MYSALGLGHVPSLAGKSRPAEVTWPLSYALDHFLSSSTQIFPRPTMALFS
PPAVTFGQETLQRPSVSPTGTDTSLTKASSHPCIFAKLTISISNWVNSSQ
FPEKDAVFGYN*
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mRNA from alignment at H-paniculata_contig12987:4574..5219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12987.1877.1 ID=mRNA_H-paniculata_contig12987.1877.1|Name=mRNA_H-paniculata_contig12987.1877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=646bp|location=Sequence derived from alignment at H-paniculata_contig12987:4574..5219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCATATTCGGGGGAAGGACGTGCGGACAAGAAGCAGGTGAAAACTTGA
CTTTGTGTGATCACACAGCTCTTTGTAGTAAGGCGCTCGGCGAGAACGTC
GAGCTCAATCATGAGCGCGACTGGGTTATCATCAACCGACATCACCTTCT
GAGAGAAGGATTTATACAGTGCATGTATTCTGCCCTGGGATTGGGGCATG
TACCATCTCTTGCAGGCAAATCCAGACCAGCCGAGGTGACGTGGCCCCTC
TCATATGCTTTAGATCATTTTCTCTCAAGCTCAACGCAAATTTTCCCACG
CCCAACTATGGCTCTCTTCTCGCCACCTGCTGTAACCTTCGGTCAGGAAA
CTCTCCAGCGCCCTTCTGTGTCACCCACAGGCACGGACACATCGCTTACG
AAAGCTTCTTCACACCCGTGCATCTTTGCGAAGTTAACCATCTCGATCTC
AAACTGGGTAAATTCTTCCCAGTTTCCAGAAAAGGACGCAGTCTTCGGTT
ATAATTGACCCATCATTGTGAAAGACATCGACGACGCATAGGGTCGTTAT
ATGGTCCTTCGACCAAACACACCCAGTGACTCACCGTGGGGGTTCGAACC
CCTAGCTCCGTCACTGGTGGCTCGCTGATCACGATCCTGCCCCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig12987:4574..5219+

>mRNA_H-paniculata_contig12987.1877.1 ID=mRNA_H-paniculata_contig12987.1877.1|Name=mRNA_H-paniculata_contig12987.1877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig12987:4574..5219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTCTGCCCTGGGATTGGGGCATGTACCATCTCTTGCAGGCAAATC
CAGACCAGCCGAGGTGACGTGGCCCCTCTCATATGCTTTAGATCATTTTC
TCTCAAGCTCAACGCAAATTTTCCCACGCCCAACTATGGCTCTCTTCTCG
CCACCTGCTGTAACCTTCGGTCAGGAAACTCTCCAGCGCCCTTCTGTGTC
ACCCACAGGCACGGACACATCGCTTACGAAAGCTTCTTCACACCCGTGCA
TCTTTGCGAAGTTAACCATCTCGATCTCAAACTGGGTAAATTCTTCCCAG
TTTCCAGAAAAGGACGCAGTCTTCGGTTATAATTGAATGTATTCTGCCCT
GGGATTGGGGCATGTACCATCTCTTGCAGGCAAATCCAGACCAGCCGAGG
TGACGTGGCCCCTCTCATATGCTTTAGATCATTTTCTCTCAAGCTCAACG
CAAATTTTCCCACGCCCAACTATGGCTCTCTTCTCGCCACCTGCTGTAAC
CTTCGGTCAGGAAACTCTCCAGCGCCCTTCTGTGTCACCCACAGGCACGG
ACACATCGCTTACGAAAGCTTCTTCACACCCGTGCATCTTTGCGAAGTTA
ACCATCTCGATCTCAAACTGGGTAAATTCTTCCCAGTTTCCAGAAAAGGA
CGCAGTCTTCGGTTATAATTGA
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