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Homology
BLAST of mRNA_H-paniculata_contig12841.1786.1 vs. uniprot
Match: D7G1X9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X9_ECTSI) HSP 1 Score: 229 bits (584), Expect = 7.430e-66 Identity = 113/266 (42.48%), Postives = 178/266 (66.92%), Query Frame = 1
Query: 1 WKKNQTLQDLCRIKWEPDPDEPPADYMNGHIPDQAMMKIFELWSEDPVKNSAKVLAKKFGLRHVVVQSIISLKSRSKWHLENTPGYKLYPELEQAVVQGKQDWLDELSQDYGIDFSDQLYYKRGGEIDYEDPDNWIGAGAETGRNHKTGRLEEYDPNDKWDLPPKRTQTQIVDDLHESRRVKAAYVAARQAEAEKKTEELKTKERLPKKRWAYAFRDTTTKESEKVAAIVRDPEGHLRSVGLEEEKTLSWADKNLFRREVKHRNSL 798
W+ + +DLCRIKWEPDPD+ P+++ GHIPD K+F+LW DP KN+A LAK+FGL ++ VQ+I++LK ++K ++E GY++YPE+E+ + K+ +++EL+Q YG D Y+ +ID DP +W R K G+L E D + K+D PP ++Q ++ +DL R KA Y A R+ EA + T++L+ + LPK+RWAYA +DT++K+S V ++RD +G +R+ ++EE+ LS+AD+NLFRR+V+ +L
Sbjct: 99 WQNSDPHEDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAMALAKQFGLPYLDVQAILTLKIKAKENVETIEGYEIYPEIEEIFTERKEAYIEELAQHYGQDIP--FIYEHCPDIDKNDPSSWTNP-----REFKLGKLTEQDRSSKFDRPPLQSQDEVAEDLKYKRTNKAIYAAVREEEAAELTKKLEKEPNLPKRRWAYALKDTSSKDSSMVPPVLRDADGVMRAATVDEERGLSYADENLFRRDVRRWTAL 357
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-07_003730.1 |
Exons | 6 |
Model size | 1884 |
Cds size | 738 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12841.1786.1 >prot_H-paniculata_contig12841.1786.1 ID=prot_H-paniculata_contig12841.1786.1|Name=mRNA_H-paniculata_contig12841.1786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MNGHIPDQAMMKIFELWSEDPVKNSAKVLAKKFGLRHVVVQSIISLKSRS KWHLENTPGYKLYPELEQAVVQGKQDWLDELSQDYGIDFSDQLYYKRGGE IDYEDPDNWIGAGAETGRNHKTGRLEEYDPNDKWDLPPKRTQTQIVDDLH ESRRVKAAYVAARQAEAEKKTEELKTKERLPKKRWAYAFRDTTTKESEKV AAIVRDPEGHLRSVGLEEEKTLSWADKNLFRREVKHRNSLFMDVD* back to topmRNA from alignment at H-paniculata_contig12841:730..7209- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12841.1786.1 ID=mRNA_H-paniculata_contig12841.1786.1|Name=mRNA_H-paniculata_contig12841.1786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6480bp|location=Sequence derived from alignment at H-paniculata_contig12841:730..7209- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGGAAAAAAAATCAAACGCTTCAGGATTTGTGCCGGATCAAGTGGGAGCC
GGATCCAGACGAGCCTCCTGCGGATTACATGAACGGTCATATCCCAGACC
AGGCCATGATGAAGATCTTTGAGCTGTGGTCGGAAGATCCCGTGAAAAAC
AGTGCCAAGGTATCCACAGTACCGTACGTACATACGTCATACCAGGTACC
CCGCAGAGGAAACTTTGTTCTGTTAAAGGAAATGTAGACATGTTTGGGCG
AATGCCTGGATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGG
GGGTTAAAAAAACAAACAAACAAAAAACACACGTCATACCAGGTACTCGC
CACGTTTGACGTTAGGGTATCGAGCGAGGGGGAATGTTGAAAGACTTGGC
ATGAATGGAAGTACTTGGCATGAAAACAGTCGGCAGTGCTGGGAATTTGG
AACTTTGGCAGATGACAGCTTGAGCCTCTGTAACACATACACCCTAGCGA
TGACGCTTTAGTATTATCCCCTTCAATATCTGATACGTAATACCTTGACA
ACAGTATTGTCCTACATTGCTGGAAAGTGGATATGGCGATACTCTAGTCA
CTAGAGTCCTCGGGGGGCGGTGACGATGTAAGTGTTTTCCTTCCTCCGGG
GAGTTATCCGGAACATACTGCGGGGCGACGGGATGGGGTTAGGTCGCTAG
TTGTTCGAGGATTACTGGGAGTGCTGTTGGCGTGTGAAGGTTGTACTGGT
AGTGGGTCACGTTTCGACTCCCACCGATGTCGCTACTTCTTAATGCCACC
CCACTCGAGTAGTGTGAGGTAATCCCACGAACCCACAGCGAGCGAGCAGT
GGGGGTCAGAGTTCCCCTTAGGAGAGCACGCGATACAAGTCAGGACGAGG
GGCCTTGAGGGATAAGATATGAACTGATGGACATGGGGCAAGGCGCGAGC
TTCACCTAGCCCGTCCAGGAGGCATGGTTGGTCAACGAGACACGCCAGGA
AGACGCAACGTGAGCTGTACGCGTCATATACGGAAAACATCCCGGATGAA
GGCTCAGTCAATCACATTACTTTAGTCATGGTCAGGGCTGACTACGGGAC
GACGGAATGGTGCGGGCGCGACGGACGGGACAACGAGGGTCGATATTTTC
ATGGGACTGGATTGATACATGATTATTGCCTAGCCCCGAGTCCTGTCCCG
TGAGCAGTTCGTGGTTCCGTATGAAGCCCGGGAATTTTTCGAGTCTGGAA
CATTACCGCTGCTCCCTCTGTGGACTGTTCAACAAGTCAGTACGAAAAAG
TTTAATGACTAGGGAGAGGGCAAGTGTATTTTAATACGTCGAGACTTAAT
GTTGTAACGGCTGTCATTCGTGCTGGGAGTGCGGTTTGATGGCTTCGCAG
CGTTGTATTTACTCGATTGATCATTAGATGCTTGCACACGTAGCGGAATC
TATCCCATCGGCGGTGCGATTGGTTGGTACGTAACCCGACCAAATTGTCG
GCCTGTATGTAGATCGATCGAGACTTGGGGGGAAAACAATGATTGCGGGA
TGTATTGAGTCCGAAAGGCTACGGGAGTCCTTAATCCGCAGTTGTTTGGA
CTGACCGCTTGGCGAAAGGACCCGTTGAACATGAAATAGAAAGAGGTGGC
CTGGGTCGCAAAGCTGTTTCAATGAAGCTCTTAGTTTGATCATCCACACT
TCGATGAAGCTGTTTGTATTTTCTTGCTTTTTTTTTTTTTTTCCCACGTT
GGAAGCAGCTAGGGTCGAACTGTTGTGTCTTTTCGTTTGCCCTTTTCGCG
TTTCGAAACGCTCCTGTGATCGCTCCGTGTCAAAAAGAGGGGTAGGCATA
ACTGCTCACCGCAATACGAAGGGATAATTTTGCATGGTTTTTTACTCATG
GCACCCCTTCTCTCCCCTCCACCCCACCCACCCACTCTATGTCGGATGTA
CGTATGTGCAGGTCTTGGCTAAGAAGTTTGGCCTGCGTCATGTTGTTGTC
CAGAGCATCATCTCGCTCAAGTCGAGAAGCAAGTGGCACCTCGAAAACAC
TCCAGGGTGAGAAGAACAGCTGCTGTTGCTAGTCATGGATGTACAGCGTG
CGGCGAATTACAAAGGTTTATTTCCCGTTTCGCTGAATCCGTTAGCGTCA
GTGCCCGCAGATGATTCAGGCATACGTTGAAAATCACCTAAAAAAACTCG
AAGAAACAGGTTGGATTTTTCGTTTGACACTAATGGCTGTTGCATGAATA
CGGGGATAGATAAGAGACAGCACCGGGGAGTTGGCATGGTTCCACGCACC
ACGACGGCAGCACTCGATAACATGCATGCATGCCATACTGCATATGTCGT
CCGTGTACTATTTACCGTACACTGATACCATCACACCTGTTGCCTTACCG
ATTGTGACGCAATTTCCAAGACGAGGCGATCGCGCCTCTCTGGCTCAATG
TTTTCTCCGCCAACATCGTTCTACAGATTGTGCTGTGTGATGTTGCATCG
TCGCTGAAATGTGTCGCGATAGTCATACCGCACGCTGATCCACGCCATGG
CCGCTATTTAATGCCTCCACTTTCCTCCTCCCTGCCAGGTACAAGTTATA
CCCCGAATTGGAGCAGGCAGTCGTGCAGGGGAAACAGGATTGGCTCGACG
AGCTTAGCCAAGACTACGGGATCGATTTCAGCGATCAGCTTTATTACAAA
AGGGGAGGGGAAATGTGAGTTTGTGTGTACTCTTGGGTTGTGTTTGATTG
CCGTCGTCGTAAGGAGAAAGTATTACGCTAAACCAGTAAAAAAGTGGTCG
TTCAAGGCGCTTCTTTCTCGGGAGTTTTGAAGATTTTAAAAAAAATCATT
TTTACTGATATAAAAAGACGGTGGGCGTTGCTATATAAAAGACGCGAGCA
ATACAGCCCTACGTTCTCACCGATTGCGCGACTGCCCTCTCAACCCTGCC
AAGCGATCGCGATTTTAGGAGATGCCAATCGCTCTGAATACACGCGGGTT
GAGGTAGATAAAACAGGTATATATAACAATGTAGAAAAATAGCGATTGAC
CATCGGAAATCACTTTGATGAATATGATTCAAGTTCCGTCCTCCCGAGGA
GGACGCGTGACCAATGGTAAAATGGTTGATAACTACCGTATGCAAAACAT
GGGTACTCACTCCACCCTCCTACTTTGTTTGTTGTTTTCCCTTCTGCTTT
CCCGGGTGTGCAGCGACTACGAAGACCCAGACAACTGGATAGGTGCGGGT
GCAGAGACAGGGAGAAATCACAAGACGGGCAGACTGGAAGAATATGACCC
CAACGATAAGTGGGACCTGCCCCCGAAAAGGACACAAACGCAGATCGTGG
ACGATCTGCACGAATCACGGCGGGTTAAGGTGAACACAGTACCATACGGA
GGGGGGAAGGACCTGCAGTAGAATGTTTTGGCGCGACTTCGGAGGGTTTG
TGAATGGTACCTCCGGCACCGTGCCAGTTATCATCCCCGAGAGGTGAATA
TGTTCGGTACGGGTATTGGTGTATTGGTCATTTTCCCATTATGCAATTGG
TGGATGACCCGTGGTCTATTGTTGAGCGTTTTTTATGCCGTGACAAATGA
TTGAATAGTGATGAGTTGTTGCTGTCTAAACTGTTTTAGTTTGTGCGATG
GAAATGGGTTTTGAAGAACGAATGGGCTCTTGGTTCGCGTACTCGAAGTC
AGCAGGACGTGCAGCAGATGCACTCCTGCCAGCTGTGCATGTTTCTGGCG
GGGGTTGTTTTACGTGAACTTGCGGGTGGGGTGTATAAATACTGAAACTC
GACTGCCTGTTTTGCCTTGTGCTACACTTGTATTGCCATAACTATGCAAG
TGTAGTTTATGCCTCGACTCTCGCATGCGTCCTGGTTTATTCCTTGCCTT
CGAGAGCCTTTTAAGTCAAGGTGTTTATTGAAAGGCTGTCGGTTAAGAAG
ACCTGTATTATAGCAACAAAAGGCTGTCGAGTGCTTCAGTCGTTGTGCAC
AGAACCATGATGCCTACGCCCCTTTGTCTGCGCTGTATTTATGTTTTTAT
TGGACTGTCTGTCTGGTCTGTCTGTATGGGCAAGTGTGGGCTCCCTGTCC
CCGAAATCATGTCATAGGCAGTCGTTGGTCTTTTTTGTTTTTTTGTCAGG
CAGCGATTGGATAATAACGTGATATAGTGGAAAAAGTTTGGAATCGGCGC
TGAAAGTGTTTTAACAAACATATATGTTTGTATACACACAGGTAGTGTTT
CTGGGTTGCCTCCTGCACGTCGTTCCCGCTTGTTGCTCTCCGCCCAGCGT
TTGGTTCCTAGTGTGTTTTTGTTAATTTCATATGTTACTTTTTCTCCTTG
CGACAGGCTGCCTACGTTGCTGCCCGACAAGCCGAAGCGGAGAAGAAGAC
CGAGGAATTGAAGACGAAGGAGCGCTTGCCCAAGAAACGTTGGGCCTACG
CCTTCCGGGACACCACCACTAAAGAGTCGGAGAAGGTGGGTTTTCGGGGA
GGTTCGTTTTGTTATCGTCGGGGGTGAGTCCATCTGTCGGAACTTATGTT
CCAAAGCCGGAAGTGTAATGTCTCGCTTCTTGCGTTGAATTATCACGTGG
TGGGTGCAGCTGTCCCGCTCGACCGTAGCAATACCATTGCGGCACCGAGG
ATGGTGTTGTTAAAAATATATATTAATAGACATTTTTTTTTTTTTTCCTT
TTCTCAATCTCACAGAACGGGTCAAGAGTATCTCTTTCACTAGTCTGCTA
GTACGTAAGCAATGTCCAGTGAGTCCATGTGTGCAGATTAGGTAGTATTA
CCATCATACCTTGGAGCCTGGTGCACTCTCTCAACATTACCAGGGTCGGG
CTAAGATATGGGGGGGGGGAAGTGTCGCCCAGCCTCTTTTTTCACTTTTT
GAGAATCTTTTACAAGTGGCTCGGCACAGGACGTTTTACCCCCTCTTGGA
AAAGTATGATCATTCTGTACATTGCATTGTGCGCCTCTAGGGATGCGTGA
ACGCATGCTATTGAATAGGTTTTACCTTGTGTTGATTCGATTTTTTTTCG
AGTCCCTGTTCGAAATGGCTCTTCGTTAAAGAGGTGGCTCGACCCCCCCC
CCCCTATACCGTAGCCCGATTCGGACCTGTTATGCCGCTATCTGTACAAA
AGTGATTATGGGACTATAAAAGGATTACATGTAATTTGTGAAGAAGAACG
ATGGTTTATTTATCCCCATCCCCATGACCTCATCCCCGTTCTTGTTTCGT
TTCGATTCGCCGTGACGGCAGGTCGCAGCAATAGTTAGGGATCCGGAGGG
CCACCTCAGATCCGTAGGTTTGGAAGAGGAAAAGACCTTGTCCTGGGCAG
ACAAGAACCTATTCCGGCGGGAGGTCAAGCACAGGAACAGCTTGTTTATG
GACGTGGATTAAGTAGCACTAGAGATAGTGACAAAGGGTTCCGGCGATTT
ATTTCCCTATTGGTTAAAAAAAAAAGAAGGAATTATCTGATTGGTGGCAA
AAATAGGGTTTGGCGAATGACGTCATTGACGGCCATGACGCCCATCTTCG
TTCTGTCGGAGTAGTTTTTGACCGATGGATGATGACGTATTCGTTGTGAC
ATGGAGAGCAAACTAACACACCTTGCTTGGTCGACATAACAACGGTAAAG
TAGCTGCTTGGAGCGATGGAGCAAGTGTGATCGAATTGGTGCCGGATAAT
ATGGTACTTGAAGACAGGAGAGTAATTGTCTTTCGTTTCGGGAGGGGAGG
GTGGTTTGGTCGCCCATGGCTTGAGGGACAAAACATGCTATTAATATATG
TCGTTTACAGTGGCATTCTCGAGCGGGCTGTAACTCTCCGCCGCCCCCTC
CAATTATGTAACGCCGTTTTTTCACAGTTTGGTTTTCGAAGGTGAGAAAC
AGCCGATTGTTCTCGTGAGAGCTCCTAGACTTGTTGCAATCGGGACTTCA
GGCTTTTATAATCCAAATATTTTGACCCCTGGCTGGCCCCAATGAAGCTG
ATGCGGACAAGTCTTTCGCTGTGAAATGGTGTTCCTAGAGGTGTGATGGT
CACACTGGAGTGGTCAAACAACCGTGGACTTGAGTCTTGGCGAGCAAACT
GTATGTTGGTGTTGGGCCCGCAGGTCGCTGTAACCTAATCCGGCGGTTTG
TTTCTCGCATGCGTGTTGTTATGTATGGGTGTGTGGACGGGTGAGAGATG
CAAAGGGCTATACTTCGTGGGACTTGAACGGGAGTCGTCAGTCTGTGAGA
ACAGCGAGTAGAAGCTGCTTTTTTTGGTCGATAATGGACGTGATTCGTTG
TCATTATATCGTATTGAATAGATCGAGCTGTGTTGCGATACTACTGACCA
TTTACGTTCTTTCGACTGAAGACGTTGATGTTTTCCGAATAAGGGTTCGG
TATCACATTGATACCGGTTGATGATGTGACCGACTGCAGCAGCTTCTATC
AAGCCAAGACCTCCACGCCAAGAAAGTTTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12841:730..7209- >mRNA_H-paniculata_contig12841.1786.1 ID=mRNA_H-paniculata_contig12841.1786.1|Name=mRNA_H-paniculata_contig12841.1786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig12841:730..7209- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAACGGTCATATCCCAGACCAGGCCATGATGAAGATCTTTGAGCTGTG GTCGGAAGATCCCGTGAAAAACAGTGCCAAGATGAACGGTCATATCCCAG ACCAGGCCATGATGAAGATCTTTGAGCTGTGGTCGGAAGATCCCGTGAAA AACAGTGCCAAGGTCTTGGCTAAGAAGTTTGGCCTGCGTCATGTTGTTGT CCAGAGCATCATCTCGCTCAAGTCGAGAAGCAAGTGGCACCTCGAAAACA CTCCAGGGTCTTGGCTAAGAAGTTTGGCCTGCGTCATGTTGTTGTCCAGA GCATCATCTCGCTCAAGTCGAGAAGCAAGTGGCACCTCGAAAACACTCCA GGGTACAAGTTATACCCCGAATTGGAGCAGGCAGTCGTGCAGGGGAAACA GGATTGGCTCGACGAGCTTAGCCAAGACTACGGGATCGATTTCAGCGATC AGCTTTATTACAAAAGGGGAGGGGAAATGTACAAGTTATACCCCGAATTG GAGCAGGCAGTCGTGCAGGGGAAACAGGATTGGCTCGACGAGCTTAGCCA AGACTACGGGATCGATTTCAGCGATCAGCTTTATTACAAAAGGGGAGGGG AAATCGACTACGAAGACCCAGACAACTGGATAGGTGCGGGTGCAGAGACA GGGAGAAATCACAAGACGGGCAGACTGGAAGAATATGACCCCAACGATAA GTGGGACCTGCCCCCGAAAAGGACACAAACGCAGATCGTGGACGATCTGC ACGAATCACGGCGGGTTAAGCGACTACGAAGACCCAGACAACTGGATAGG TGCGGGTGCAGAGACAGGGAGAAATCACAAGACGGGCAGACTGGAAGAAT ATGACCCCAACGATAAGTGGGACCTGCCCCCGAAAAGGACACAAACGCAG ATCGTGGACGATCTGCACGAATCACGGCGGGTTAAGGCTGCCTACGTTGC TGCCCGACAAGCCGAAGCGGAGAAGAAGACCGAGGAATTGAAGACGAAGG AGCGCTTGCCCAAGAAACGTTGGGCCTACGCCTTCCGGGACACCACCACT AAAGAGTCGGAGAAGGCTGCCTACGTTGCTGCCCGACAAGCCGAAGCGGA GAAGAAGACCGAGGAATTGAAGACGAAGGAGCGCTTGCCCAAGAAACGTT GGGCCTACGCCTTCCGGGACACCACCACTAAAGAGTCGGAGAAGGTCGCA GCAATAGTTAGGGATCCGGAGGGCCACCTCAGATCCGTAGGTTTGGAAGA GGAAAAGACCTTGTCCTGGGCAGACAAGAACCTATTCCGGCGGGAGGTCA AGCACAGGAACAGCTTGTTTATGGACGTGGATTAAGTCGCAGCAATAGTT AGGGATCCGGAGGGCCACCTCAGATCCGTAGGTTTGGAAGAGGAAAAGAC CTTGTCCTGGGCAGACAAGAACCTATTCCGGCGGGAGGTCAAGCACAGGA ACAGCTTGTTTATGGACGTGGATTAA back to top
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