mRNA_H-paniculata_contig12798.1754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12798.1754.1
Unique NamemRNA_H-paniculata_contig12798.1754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.090e-15
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 KLVRVPKAASTAVSMVARRLAGCTPPGPCCRYPGDPPGSCAVAGLMCDKVCG 156
            +L+RVPKA S+  S++ARRL GC P GPCCR+PGDPPGSC + GLMC  V G
Sbjct:   59 QLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTG 110
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BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Match: D7G3X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X3_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.350e-15
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 RVPKAASTAVSMVARRLAGCTPPGPCCRYPGDPPGSCAVAGLMCDKVCG 156
            RVPKA S+  S++ARRL GC P GPCC +PGDPPGSC + GLMC  V G
Sbjct:    4 RVPKAGSSEASVIARRLGGCVPRGPCCAFPGDPPGSCPLEGLMCPMVTG 52
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BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.780e-13
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 KLVRVPKAASTAVSMVARRLAGCTPPGPCCRYPGDPPGSCAVAGLMCDKVCG 156
            +LVRVPKA S+  S++ARRL GC P GPCC  PG PPGSC   GLMC  V G
Sbjct:   78 QLVRVPKAGSSEASVIARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLG 129
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BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.150e-11
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 LVRVPKAASTAVSMVARRLAGCTPPGPCCRYPGDPPGSCAVAGLMCDKVCG 156
            L+ VPKA S+  S+VARRL GC P GPCC  PG PPGSC   GLMC  V G
Sbjct:   53 LMLVPKAGSSEASVVARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLG 103
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BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Match: A0A482SEE5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEE5_9ARCH)

HSP 1 Score: 50.4 bits (119), Expect = 7.190e-6
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 1 
Query:   58 LAGCTPPGPCCRYPGDPPGSCAVAGLM 138
            + GC PPGPCCR+PGDPPGSC   GL 
Sbjct:    1 MVGCYPPGPCCRWPGDPPGSCPAKGLF 27
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12798.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L244_9PHAE1.090e-1565.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3X3_ECTSI2.350e-1565.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWY0_ECTSI4.780e-1363.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAL5_9PHAE1.150e-1162.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SEE5_9ARCH7.190e-670.37Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12798contigH-paniculata_contig12798:161..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_007170.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.2432446-CDS-H-paniculata_contig12798:160..3161622929000.2432446-CDS-H-paniculata_contig12798:160..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12798 161..316 +
1691480696.8396704-CDS-H-paniculata_contig12798:160..3161691480696.8396704-CDS-H-paniculata_contig12798:160..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12798 161..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12798.1754.1prot_H-paniculata_contig12798.1754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12798 161..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12798.1754.1

>prot_H-paniculata_contig12798.1754.1 ID=prot_H-paniculata_contig12798.1754.1|Name=mRNA_H-paniculata_contig12798.1754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
KLVRVPKAASTAVSMVARRLAGCTPPGPCCRYPGDPPGSCAVAGLMCDKV
CG
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mRNA from alignment at H-paniculata_contig12798:161..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12798.1754.1 ID=mRNA_H-paniculata_contig12798.1754.1|Name=mRNA_H-paniculata_contig12798.1754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig12798:161..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGGTGCGGGTGCCCAAAGCGGCGAGCACAGCGGTGAGCATGGTCGC
GAGGCGTTTGGCGGGATGTACACCACCCGGCCCGTGCTGCAGATATCCAG
GGGACCCGCCAGGATCTTGTGCCGTGGCAGGGCTAATGTGCGACAAGGTT
TGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig12798:161..316+

>mRNA_H-paniculata_contig12798.1754.1 ID=mRNA_H-paniculata_contig12798.1754.1|Name=mRNA_H-paniculata_contig12798.1754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig12798:161..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGGTGCGGGTGCCCAAAGCGGCGAGCACAGCGGTGAGCATGGTCGC
GAGGCGTTTGGCGGGATGTACACCACCCGGCCCGTGCTGCAGATATCCAG
GGGACCCGCCAGGATCTTGTGCCGTGGCAGGGCTAATGTGCGACAAGGTT
TGTGGTAAGCTGGTGCGGGTGCCCAAAGCGGCGAGCACAGCGGTGAGCAT
GGTCGCGAGGCGTTTGGCGGGATGTACACCACCCGGCCCGTGCTGCAGAT
ATCCAGGGGACCCGCCAGGATCTTGTGCCGTGGCAGGGCTAATGTGCGAC
AAGGTTTGTGGT
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