mRNA_H-paniculata_contig1279.1749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1279.1749.1
Unique NamemRNA_H-paniculata_contig1279.1749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1279.1749.1 vs. uniprot
Match: D7FVH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.070e-13
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 VPPTDGSAFGSILGGVPKTTVVEGLVIPAQLDSVQATNFVLTQQARK 141
            VPPT+GS FGS + G  KTTVVEGLVIP++LD+VQATNFVLTQQ  K
Sbjct:  485 VPPTEGSVFGSTVKGPTKTTVVEGLVIPSRLDTVQATNFVLTQQPGK 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1279.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVH9_ECTSI8.070e-1374.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1279contigH-paniculata_contig1279:27057..27202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D7FVH9
Preferred nameCFAP221
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs28KJC@1,2QT0T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size146
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.7273014-CDS-H-paniculata_contig1279:27058..272021622928999.7273014-CDS-H-paniculata_contig1279:27058..27202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1279 27059..27202 -
1691480696.599033-CDS-H-paniculata_contig1279:27058..272021691480696.599033-CDS-H-paniculata_contig1279:27058..27202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1279 27059..27202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1279.1749.1prot_H-paniculata_contig1279.1749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1279 27059..27202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1279.1749.1

>prot_H-paniculata_contig1279.1749.1 ID=prot_H-paniculata_contig1279.1749.1|Name=mRNA_H-paniculata_contig1279.1749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
VPPTDGSAFGSILGGVPKTTVVEGLVIPAQLDSVQATNFVLTQQARKS
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mRNA from alignment at H-paniculata_contig1279:27057..27202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1279.1749.1 ID=mRNA_H-paniculata_contig1279.1749.1|Name=mRNA_H-paniculata_contig1279.1749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=146bp|location=Sequence derived from alignment at H-paniculata_contig1279:27057..27202- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCTCCAACCGACGGCAGTGCTTTCGGGTCTATTCTGGGAGGAGTGCC
GAAGACAACGGTAGTGGAAGGACTTGTAATACCCGCCCAACTGGATAGTG
TTCAGGCGACGAACTTCGTGCTCACCCAGCAGGCAAGAAAGAGCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1279:27057..27202-

>mRNA_H-paniculata_contig1279.1749.1 ID=mRNA_H-paniculata_contig1279.1749.1|Name=mRNA_H-paniculata_contig1279.1749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig1279:27057..27202- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCTCCAACCGACGGCAGTGCTTTCGGGTCTATTCTGGGAGGAGTGCC
GAAGACAACGGTAGTGGAAGGACTTGTAATACCCGCCCAACTGGATAGTG
TTCAGGCGACGAACTTCGTGCTCACCCAGCAGGCAAGAAAGAGCGTGCCT
CCAACCGACGGCAGTGCTTTCGGGTCTATTCTGGGAGGAGTGCCGAAGAC
AACGGTAGTGGAAGGACTTGTAATACCCGCCCAACTGGATAGTGTTCAGG
CGACGAACTTCGTGCTCACCCAGCAGGCAAGAAAGAGC
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