mRNA_H-paniculata_contig9773.17425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9773.17425.1
Unique NamemRNA_H-paniculata_contig9773.17425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9773.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9773contigH-paniculata_contig9773:125..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.9325478-UTR-H-paniculata_contig9773:124..1281622931208.9325478-UTR-H-paniculata_contig9773:124..128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9773 125..128 +
1691481639.2682908-UTR-H-paniculata_contig9773:124..1281691481639.2682908-UTR-H-paniculata_contig9773:124..128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9773 125..128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.9458847-CDS-H-paniculata_contig9773:128..6831622931208.9458847-CDS-H-paniculata_contig9773:128..683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9773 129..683 +
1691481639.280499-CDS-H-paniculata_contig9773:128..6831691481639.280499-CDS-H-paniculata_contig9773:128..683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9773 129..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9773.17425.1prot_H-paniculata_contig9773.17425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9773 129..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9773.17425.1

>prot_H-paniculata_contig9773.17425.1 ID=prot_H-paniculata_contig9773.17425.1|Name=mRNA_H-paniculata_contig9773.17425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MGGVFSEHQHHQQQQQQQQQDGGGPGPVMAGSSGNDPAHLGGGGVVGNAD
GGFPQQPPPPPPPKRTNSLGGNNMGTPRMLPPTPPDGNNHSADDGPQYDP
FSAPMGGLRGPGQGGPQVMIQQGGGGGGGGGGSGVLGGPGMPPGPGMGMG
SGMGHGIGPAAMGPGGVGGGGGNGGPPMMRVEGVG
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mRNA from alignment at H-paniculata_contig9773:125..683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9773.17425.1 ID=mRNA_H-paniculata_contig9773.17425.1|Name=mRNA_H-paniculata_contig9773.17425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=559bp|location=Sequence derived from alignment at H-paniculata_contig9773:125..683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAACATGGGCGGGGTATTTTCTGAACATCAACACCATCAACAGCAGCAGC
AGCAGCAGCAGCAGGATGGTGGAGGGCCTGGTCCAGTCATGGCAGGAAGT
AGTGGGAACGACCCAGCACACCTGGGAGGTGGCGGGGTTGTAGGAAATGC
CGACGGCGGCTTCCCCCAGCAACCCCCCCCGCCTCCGCCTCCAAAACGCA
CCAACTCGCTTGGAGGAAACAATATGGGAACCCCGAGGATGCTGCCGCCG
ACGCCTCCTGATGGTAACAACCACAGCGCTGACGACGGACCCCAGTACGA
CCCGTTTTCGGCGCCGATGGGTGGCCTGCGAGGGCCAGGGCAAGGGGGTC
CGCAGGTGATGATACAGCAGGGGGGCGGGGGCGGGGGCGGGGGTGGTGGC
AGTGGTGTGCTCGGCGGGCCTGGCATGCCCCCAGGGCCAGGGATGGGCAT
GGGGTCTGGGATGGGGCATGGAATCGGACCTGCTGCGATGGGTCCCGGTG
GCGTTGGCGGTGGCGGCGGAAACGGGGGTCCGCCGATGATGAGAGTTGAA
GGTGTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9773:125..683+

>mRNA_H-paniculata_contig9773.17425.1 ID=mRNA_H-paniculata_contig9773.17425.1|Name=mRNA_H-paniculata_contig9773.17425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig9773:125..683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGGGTATTTTCTGAACATCAACACCATCAACAGCAGCAGCAGCA
GCAGCAGCAGGATGGTGGAGGGCCTGGTCCAGTCATGGCAGGAAGTAGTG
GGAACGACCCAGCACACCTGGGAGGTGGCGGGGTTGTAGGAAATGCCGAC
GGCGGCTTCCCCCAGCAACCCCCCCCGCCTCCGCCTCCAAAACGCACCAA
CTCGCTTGGAGGAAACAATATGGGAACCCCGAGGATGCTGCCGCCGACGC
CTCCTGATGGTAACAACCACAGCGCTGACGACGGACCCCAGTACGACCCG
TTTTCGGCGCCGATGGGTGGCCTGCGAGGGCCAGGGCAAGGGGGTCCGCA
GGTGATGATACAGCAGGGGGGCGGGGGCGGGGGCGGGGGTGGTGGCAGTG
GTGTGCTCGGCGGGCCTGGCATGCCCCCAGGGCCAGGGATGGGCATGGGG
TCTGGGATGGGGCATGGAATCGGACCTGCTGCGATGGGTCCCGGTGGCGT
TGGCGGTGGCGGCGGAAACGGGGGTCCGCCGATGATGAGAGTTGAAGGTG
TGGGCATGGGCGGGGTATTTTCTGAACATCAACACCATCAACAGCAGCAG
CAGCAGCAGCAGCAGGATGGTGGAGGGCCTGGTCCAGTCATGGCAGGAAG
TAGTGGGAACGACCCAGCACACCTGGGAGGTGGCGGGGTTGTAGGAAATG
CCGACGGCGGCTTCCCCCAGCAACCCCCCCCGCCTCCGCCTCCAAAACGC
ACCAACTCGCTTGGAGGAAACAATATGGGAACCCCGAGGATGCTGCCGCC
GACGCCTCCTGATGGTAACAACCACAGCGCTGACGACGGACCCCAGTACG
ACCCGTTTTCGGCGCCGATGGGTGGCCTGCGAGGGCCAGGGCAAGGGGGT
CCGCAGGTGATGATACAGCAGGGGGGCGGGGGCGGGGGCGGGGGTGGTGG
CAGTGGTGTGCTCGGCGGGCCTGGCATGCCCCCAGGGCCAGGGATGGGCA
TGGGGTCTGGGATGGGGCATGGAATCGGACCTGCTGCGATGGGTCCCGGT
GGCGTTGGCGGTGGCGGCGGAAACGGGGGTCCGCCGATGATGAGAGTTGA
AGGTGTGGGC
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