mRNA_H-paniculata_contig1277.1741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1277.1741.1
Unique NamemRNA_H-paniculata_contig1277.1741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1277.1741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1277contigH-paniculata_contig1277:26218..26849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1277.1741.1prot_H-paniculata_contig1277.1741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1277 26240..26638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.2154064-UTR-H-paniculata_contig1277:26217..262391622928998.2154064-UTR-H-paniculata_contig1277:26217..26239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1277 26218..26239 +
1691480696.0570157-UTR-H-paniculata_contig1277:26217..262391691480696.0570157-UTR-H-paniculata_contig1277:26217..26239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1277 26218..26239 +
1622928998.2486246-UTR-H-paniculata_contig1277:26638..268491622928998.2486246-UTR-H-paniculata_contig1277:26638..26849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1277 26639..26849 +
1691480696.0723724-UTR-H-paniculata_contig1277:26638..268491691480696.0723724-UTR-H-paniculata_contig1277:26638..26849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1277 26639..26849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.2307315-CDS-H-paniculata_contig1277:26239..266381622928998.2307315-CDS-H-paniculata_contig1277:26239..26638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1277 26240..26638 +
1691480696.0651953-CDS-H-paniculata_contig1277:26239..266381691480696.0651953-CDS-H-paniculata_contig1277:26239..26638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1277 26240..26638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1277.1741.1

>prot_H-paniculata_contig1277.1741.1 ID=prot_H-paniculata_contig1277.1741.1|Name=mRNA_H-paniculata_contig1277.1741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MLLVLKCRCVVLGGLQGEHPHVLLFSFRQRGLLLGSPFTHAVVKEKCACM
RCAFVAFVLAQSTTVMILRPCLVRKLLVYVWRVCGIYFRTEDYGHDFTTF
GFVVVFVLPPSYRLVPCPFSRASNMGMIVDIS*
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mRNA from alignment at H-paniculata_contig1277:26218..26849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1277.1741.1 ID=mRNA_H-paniculata_contig1277.1741.1|Name=mRNA_H-paniculata_contig1277.1741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=632bp|location=Sequence derived from alignment at H-paniculata_contig1277:26218..26849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAGTGAGTGTGTTTATTTATGTTGTTAGTTTTGAAGTGCCGGTGCG
TTGTACTTGGCGGGCTACAGGGGGAACATCCCCATGTGTTACTATTTTCG
TTTCGGCAACGTGGTCTACTGTTAGGTAGTCCTTTTACACACGCTGTGGT
AAAAGAAAAGTGTGCGTGTATGCGTTGCGCGTTTGTGGCATTTGTCTTGG
CGCAGAGCACTACCGTCATGATTTTGCGACCTTGTTTGGTAAGAAAATTG
CTCGTGTATGTGTGGCGCGTTTGCGGCATATATTTCCGCACAGAGGACTA
CGGTCATGATTTTACGACCTTTGGTTTTGTGGTTGTTTTTGTACTGCCGC
CGTCGTATCGTCTTGTCCCTTGTCCCTTCAGTCGAGCAAGTAACATGGGT
ATGATTGTGGACATTAGCTAATAGGATACCCCTTTGAGGATTCGTTCTTC
TGGTACTGTGATAATGGTTGAGAGCATGACGGTGGCTGCTCATAGATAGT
GTTTTCTGGCGATGCTAGCTTGGCTTGGAGCCTTGGTGTGTTTTTGCTGC
CCACTACTTTGGCTGTTCTATGGTGTGTTGAGCGGTATTGCTTCTGGTAG
AGGGGAACTGACCCTACAAAACTGCAACTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1277:26218..26849+

>mRNA_H-paniculata_contig1277.1741.1 ID=mRNA_H-paniculata_contig1277.1741.1|Name=mRNA_H-paniculata_contig1277.1741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig1277:26218..26849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTTAGTTTTGAAGTGCCGGTGCGTTGTACTTGGCGGGCTACAGGG
GGAACATCCCCATGTGTTACTATTTTCGTTTCGGCAACGTGGTCTACTGT
TAGGTAGTCCTTTTACACACGCTGTGGTAAAAGAAAAGTGTGCGTGTATG
CGTTGCGCGTTTGTGGCATTTGTCTTGGCGCAGAGCACTACCGTCATGAT
TTTGCGACCTTGTTTGGTAAGAAAATTGCTCGTGTATGTGTGGCGCGTTT
GCGGCATATATTTCCGCACAGAGGACTACGGTCATGATTTTACGACCTTT
GGTTTTGTGGTTGTTTTTGTACTGCCGCCGTCGTATCGTCTTGTCCCTTG
TCCCTTCAGTCGAGCAAGTAACATGGGTATGATTGTGGACATTAGCTAAA
TGTTGTTAGTTTTGAAGTGCCGGTGCGTTGTACTTGGCGGGCTACAGGGG
GAACATCCCCATGTGTTACTATTTTCGTTTCGGCAACGTGGTCTACTGTT
AGGTAGTCCTTTTACACACGCTGTGGTAAAAGAAAAGTGTGCGTGTATGC
GTTGCGCGTTTGTGGCATTTGTCTTGGCGCAGAGCACTACCGTCATGATT
TTGCGACCTTGTTTGGTAAGAAAATTGCTCGTGTATGTGTGGCGCGTTTG
CGGCATATATTTCCGCACAGAGGACTACGGTCATGATTTTACGACCTTTG
GTTTTGTGGTTGTTTTTGTACTGCCGCCGTCGTATCGTCTTGTCCCTTGT
CCCTTCAGTCGAGCAAGTAACATGGGTATGATTGTGGACATTAGCTAA
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