mRNA_H-paniculata_contig9651.17342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9651.17342.1
Unique NamemRNA_H-paniculata_contig9651.17342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9651.17342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9651contigH-paniculata_contig9651:752..1361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9651.17342.1prot_H-paniculata_contig9651.17342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9651 835..1170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.1163144-UTR-H-paniculata_contig9651:751..8341622931197.1163144-UTR-H-paniculata_contig9651:751..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 752..834 +
1691481634.0470827-UTR-H-paniculata_contig9651:751..8341691481634.0470827-UTR-H-paniculata_contig9651:751..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 752..834 +
1622931197.151417-UTR-H-paniculata_contig9651:1170..13611622931197.151417-UTR-H-paniculata_contig9651:1170..1361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 1171..1361 +
1691481634.0706851-UTR-H-paniculata_contig9651:1170..13611691481634.0706851-UTR-H-paniculata_contig9651:1170..1361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 1171..1361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.1317265-CDS-H-paniculata_contig9651:834..11701622931197.1317265-CDS-H-paniculata_contig9651:834..1170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 835..1170 +
1691481634.060099-CDS-H-paniculata_contig9651:834..11701691481634.060099-CDS-H-paniculata_contig9651:834..1170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 835..1170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9651.17342.1

>prot_H-paniculata_contig9651.17342.1 ID=prot_H-paniculata_contig9651.17342.1|Name=mRNA_H-paniculata_contig9651.17342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MTIAVSKFHSVNRTTCCSKAIWPSFGLVAILVLNLCGEKRRLCEPQELLN
IVEERVETTLFIPEIVTDTANFTQRTSHHDEVQQHIPSGKTLTTETRQSR
AQTPAPSKNPS*
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mRNA from alignment at H-paniculata_contig9651:752..1361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9651.17342.1 ID=mRNA_H-paniculata_contig9651.17342.1|Name=mRNA_H-paniculata_contig9651.17342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at H-paniculata_contig9651:752..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATTTCTCTCACCCCTTAAAACTGTATTAGTCCATCGACAAATAAAAAA
AGTGTATGGTGAACCGATCCATTTATTTTTGGTATGACGATTGCCGTGTC
AAAGTTTCATAGTGTAAATCGAACAACTTGTTGCAGCAAAGCGATTTGGC
CGTCATTCGGCTTGGTGGCCATTTTAGTACTGAATTTATGTGGGGAAAAA
AGAAGATTGTGCGAACCGCAAGAGCTGTTGAACATCGTTGAAGAAAGAGT
TGAGACCACACTTTTTATTCCAGAGATAGTCACCGACACAGCCAACTTTA
CACAGCGAACCTCCCACCATGATGAAGTCCAACAGCACATACCATCAGGT
AAAACGTTGACAACCGAAACACGTCAATCCCGTGCGCAAACACCAGCACC
AAGTAAAAATCCATCGTAAGAATCAGACGCATTTGATACTTGTATACTCT
CGATCATAGGCACTGTGTCACCCAATACTTCATTATAGTCCTACTCTGTC
CGCAGTCCATTTCTCCAGCCGACTCATACCGTAAAATGTGAACACCGTCG
CCTACGAGCATGCACCACCTATACTCCACAAATTTTGTCGTGACTTCGTA
CGTACATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9651:752..1361+

>mRNA_H-paniculata_contig9651.17342.1 ID=mRNA_H-paniculata_contig9651.17342.1|Name=mRNA_H-paniculata_contig9651.17342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig9651:752..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATTGCCGTGTCAAAGTTTCATAGTGTAAATCGAACAACTTGTTG
CAGCAAAGCGATTTGGCCGTCATTCGGCTTGGTGGCCATTTTAGTACTGA
ATTTATGTGGGGAAAAAAGAAGATTGTGCGAACCGCAAGAGCTGTTGAAC
ATCGTTGAAGAAAGAGTTGAGACCACACTTTTTATTCCAGAGATAGTCAC
CGACACAGCCAACTTTACACAGCGAACCTCCCACCATGATGAAGTCCAAC
AGCACATACCATCAGGTAAAACGTTGACAACCGAAACACGTCAATCCCGT
GCGCAAACACCAGCACCAAGTAAAAATCCATCGTAAATGACGATTGCCGT
GTCAAAGTTTCATAGTGTAAATCGAACAACTTGTTGCAGCAAAGCGATTT
GGCCGTCATTCGGCTTGGTGGCCATTTTAGTACTGAATTTATGTGGGGAA
AAAAGAAGATTGTGCGAACCGCAAGAGCTGTTGAACATCGTTGAAGAAAG
AGTTGAGACCACACTTTTTATTCCAGAGATAGTCACCGACACAGCCAACT
TTACACAGCGAACCTCCCACCATGATGAAGTCCAACAGCACATACCATCA
GGTAAAACGTTGACAACCGAAACACGTCAATCCCGTGCGCAAACACCAGC
ACCAAGTAAAAATCCATCGTAA
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