mRNA_H-paniculata_contig9646.17335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9646.17335.1
Unique NamemRNA_H-paniculata_contig9646.17335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9646.17335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9646contigH-paniculata_contig9646:852..2809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.2768142-CDS-H-paniculata_contig9646:851..10621622931196.2768142-CDS-H-paniculata_contig9646:851..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9646 852..1062 +
1691481633.6922348-CDS-H-paniculata_contig9646:851..10621691481633.6922348-CDS-H-paniculata_contig9646:851..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9646 852..1062 +
1622931196.2903142-CDS-H-paniculata_contig9646:2576..28091622931196.2903142-CDS-H-paniculata_contig9646:2576..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9646 2577..2809 +
1691481633.7034822-CDS-H-paniculata_contig9646:2576..28091691481633.7034822-CDS-H-paniculata_contig9646:2576..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9646 2577..2809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9646.17335.1prot_H-paniculata_contig9646.17335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9646 852..2809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9646.17335.1

>prot_H-paniculata_contig9646.17335.1 ID=prot_H-paniculata_contig9646.17335.1|Name=mRNA_H-paniculata_contig9646.17335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
QITHNVALSGGAVALSDEAQGRCQDVNFTGNSASDIGGAVHVWGNDSAFI
MERCSFLKNIAEDLVDGAPVEIINAGGSTSTSGIAYFDPAGPAGGAIATT
EGASVWISAGMVSGNKAGGRGGGAYCAGANSSVTVKGIDFEGQEAGIW
back to top

mRNA from alignment at H-paniculata_contig9646:852..2809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9646.17335.1 ID=mRNA_H-paniculata_contig9646.17335.1|Name=mRNA_H-paniculata_contig9646.17335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1958bp|location=Sequence derived from alignment at H-paniculata_contig9646:852..2809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTACCCACAACGTAGCACTCTCGGGCGGCGCCGTAGCTCTGTCCGA
TGAGGCGCAAGGGCGATGCCAGGACGTGAACTTCACCGGCAACTCGGCTT
CGGACATCGGTGGGGCTGTACATGTGTGGGGGAACGATTCTGCCTTCATC
ATGGAACGGTGCTCGTTCCTGAAGAACATTGCAGAGGACCTCGTAGATGG
TGCTCCTGTCGGTACGTGTTGTTTTCGTGATTTTCTTCGAGAGGGTGCCT
GTGAAAATACGTCATCGGTAGAAAATTAAGGTATAATTCGGTAACTATAC
GTTTGTGTAGAAAACAAACAAACCCTCTTTTCATGATGGTGTAGGTATGT
AGCGTGTAGGTCCTCGGCCACGAGATGACAAGGTGGTGAGTTCAAATCCG
GTCCCGATCACCAAAAAAATGCGAGGCAAGCAGGGGCCGTAGAAATGGTG
GGCGAACATGTCTGGTCTAGGGTGGAGTGGAGATGGATAAATCCCCACAC
GCATATAAGCAAAAACGACCTGCGATCTCCCAATGAAGAGGCAAGGTACC
TGTGAAAGATGTACTTGGTAATCCACGCTAGTCTGTCGAAACCGATTTCC
CCTAGATGGTTCGTTCACGAAGGAAGAGAGGTCCCAACAGTACATAGGGG
GTGGTGTGGACAATACCGAAAAGCCCTGAGGTATCGCACCGGGATGCGAT
TTTTTTTTTTTTCAAACACGACTATCTTGAAAACCGAAAACATGGCGTGA
AAATCTTTTCAACGGCATACCACTCGTTGGCAGTGGCGCTGTAGTTCTTG
AGATAATCGCGTGCGAAAAAAGTTTCGCGCCTTTGACGCCATCGATTTCC
ATCTCCGGTTTTTATGTTAGGCAAATAGCTCTAGCGCAAGAATTTGTTTG
TTTCCGTTCAGTGAGTAAGACAGAGGATTACAGAATTGCCTACTCTAGAG
GGATAATTCCCAAAAGTCTCTGTCGAAGGCGAAACGTTTTTCTTGCACAC
CCCGTTTTACGATGGGGGCTGCATCCCGAAGTGGTGAAGTTAGGGGGGGC
GATAGCTGCCTGTCGCCACCTACAGTACCAAGCTCAGGCAACTCTCGAGC
GCCCTGACGGGTAAAATTGGGCGATATAGAACGGCAAACCTCTTCGTAAA
CAGAGCTTGGAATTAAATAGGTTCAAGGAGATTGTGCCGCGACAGCAGAT
TGTGCGACTAGCAGCATATGATTAATAGTCGGAGAAGGTTGTTGAGAAAG
CCGAGGTTGAAAATAGTGTTGGATCATCGGAAGGTGGTTGTAAATCGATG
AATGCACCCTGGGTTAAGCTACGGTGAGTACTTTTAGGCTGAGTTATCTT
GGAGCAGTGGACGAGAATCGCACGATGAATATCTCACGGCGGCGGTGATG
GTGATGGTGACAGTGATTGTGATTGTGGAGATTGTGTTGGATAAACATGT
CTGTACTTGGTGATATCGATCAACCAATCAATCTACCCCTAATATCATCG
TTTATTTCTTCGATAGCCGGTAATAGCGCGACCTGGAAATTCCGTGGTTC
TTGTACGTGGTTGAAGGCTTTCCTTTCATGCTTCATTATTTTTTACTTTT
ACATGTACAATATATATACTCGGTGCAGATAAATAGCTGCTACGGTAACG
GTCCCAAAAAATAGCTCATAGGGTTCAATAGCATCAAGCACTATCCCCTC
TCTCTCCCTCTGATCACACCCGCAGAGATCATCAACGCCGGCGGCAGCAC
CAGCACGTCGGGCATCGCTTATTTCGACCCCGCAGGCCCTGCGGGCGGCG
CCATCGCGACCACCGAAGGTGCTAGCGTGTGGATATCGGCGGGGATGGTG
TCGGGAAACAAGGCGGGCGGGCGCGGTGGAGGCGCTTACTGTGCAGGAGC
GAATTCCAGTGTCACGGTGAAAGGCATAGATTTCGAAGGGCAAGAGGCAG
GAATCTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9646:852..2809+

>mRNA_H-paniculata_contig9646.17335.1 ID=mRNA_H-paniculata_contig9646.17335.1|Name=mRNA_H-paniculata_contig9646.17335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig9646:852..2809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTACCCACAACGTAGCACTCTCGGGCGGCGCCGTAGCTCTGTCCGA
TGAGGCGCAAGGGCGATGCCAGGACGTGAACTTCACCGGCAACTCGGCTT
CGGACATCGGTGGGGCTGTACATGTGTGGGGGAACGATTCTGCCTTCATC
ATGGAACGGTGCTCGTTCCTGAAGAACATTGCAGAGGACCTCGTAGATGG
TGCTCCTGTCGCAGATTACCCACAACGTAGCACTCTCGGGCGGCGCCGTA
GCTCTGTCCGATGAGGCGCAAGGGCGATGCCAGGACGTGAACTTCACCGG
CAACTCGGCTTCGGACATCGGTGGGGCTGTACATGTGTGGGGGAACGATT
CTGCCTTCATCATGGAACGGTGCTCGTTCCTGAAGAACATTGCAGAGGAC
CTCGTAGATGGTGCTCCTGTCGAGATCATCAACGCCGGCGGCAGCACCAG
CACGTCGGGCATCGCTTATTTCGACCCCGCAGGCCCTGCGGGCGGCGCCA
TCGCGACCACCGAAGGTGCTAGCGTGTGGATATCGGCGGGGATGGTGTCG
GGAAACAAGGCGGGCGGGCGCGGTGGAGGCGCTTACTGTGCAGGAGCGAA
TTCCAGTGTCACGGTGAAAGGCATAGATTTCGAAGGGCAAGAGGCAGGAA
TCTGGAGATCATCAACGCCGGCGGCAGCACCAGCACGTCGGGCATCGCTT
ATTTCGACCCCGCAGGCCCTGCGGGCGGCGCCATCGCGACCACCGAAGGT
GCTAGCGTGTGGATATCGGCGGGGATGGTGTCGGGAAACAAGGCGGGCGG
GCGCGGTGGAGGCGCTTACTGTGCAGGAGCGAATTCCAGTGTCACGGTGA
AAGGCATAGATTTCGAAGGGCAAGAGGCAGGAATCTGG
back to top