mRNA_H-paniculata_contig12759.1733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12759.1733.1
Unique NamemRNA_H-paniculata_contig12759.1733.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12759.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12759contigH-paniculata_contig12759:5650..6402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12759.1733.1prot_H-paniculata_contig12759.1733.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12759 5687..6402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3814213-UTR-H-paniculata_contig12759:5649..56861622928997.3814213-UTR-H-paniculata_contig12759:5649..5686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12759 5650..5686 +
1691480695.7497876-UTR-H-paniculata_contig12759:5649..56861691480695.7497876-UTR-H-paniculata_contig12759:5649..5686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12759 5650..5686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.41363-CDS-H-paniculata_contig12759:5686..57251622928997.41363-CDS-H-paniculata_contig12759:5686..5725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 5687..5725 +
1691480695.7573812-CDS-H-paniculata_contig12759:5686..57251691480695.7573812-CDS-H-paniculata_contig12759:5686..5725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 5687..5725 +
1622928997.4348006-CDS-H-paniculata_contig12759:6007..61211622928997.4348006-CDS-H-paniculata_contig12759:6007..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 6008..6121 +
1691480695.7647536-CDS-H-paniculata_contig12759:6007..61211691480695.7647536-CDS-H-paniculata_contig12759:6007..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 6008..6121 +
1622928997.454055-CDS-H-paniculata_contig12759:6306..64021622928997.454055-CDS-H-paniculata_contig12759:6306..6402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 6307..6402 +
1691480695.772371-CDS-H-paniculata_contig12759:6306..64021691480695.772371-CDS-H-paniculata_contig12759:6306..6402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12759 6307..6402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12759.1733.1

>prot_H-paniculata_contig12759.1733.1 ID=prot_H-paniculata_contig12759.1733.1|Name=mRNA_H-paniculata_contig12759.1733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MGATRTNVARRRGTTRTATTMSAPTAGEGGRITRARSATMDATRMNVARK
GTRAGTGTTKHSWKITSLGRSRREDAESTACR*
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mRNA from alignment at H-paniculata_contig12759:5650..6402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12759.1733.1 ID=mRNA_H-paniculata_contig12759.1733.1|Name=mRNA_H-paniculata_contig12759.1733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig12759:5650..6402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGGATGAAGGACTACAAGGGCAAGAAGTGCCACGATGGGTGCAACAA
GGACGAATGTTGCGAGAAGAAGAGGGGTGAGTGCGGCGCGATTGGTAGTC
GACGGCAGCAGGGCGTGGGAAATGGTTCGGGGCGTATACGTCGAGAAGCG
GGTGACTCAGCTTTTTATTCTTGCTCTCACGTTGTTGAGCGGCATCAAAT
TTATTGTGCCGCAACACGCCATAGTACGATTAACTAATTGTTTGGTTGAA
TATTAGAGTTGCGTCGTTGGTCCAGTCGTAGACTGCAGTATATATCAAGT
GTTCGTATGATTTCTACCAGCGTGACCCATGCCAGTATGCGTTCCCGTAT
CCCTACAGACGACGAGAACTGCGACGACTATGAGTGCCCCGACGGCTGGA
GAAGGAGGAAGGATTACAAGGGCAAGAAGTGCTACGATGGATGCAACAAG
GATGAATGTTGCGAGAAAAGGGGTGAGTGCGGCGCGTTTTGGTGTTGGCA
GCAGCGAGGTGCAAGAAATTTATCCGGGCGCATCCATCGAGAAGCAGGCA
CGGAAAACTTGTCGTACAAATAGGATTTGATATACTAAGTTCACGACACG
CCGCGTGGTGCCACTGTTGCACCTGTGCGCTCCGCCTCCGTGCGTCTTGC
TTTCCAGACAAGGGCGGGCACAGGAACTACTAAGCATTCGTGGAAGATAA
CGTCCTTGGGTCGCTCAAGACGAGAGGATGCGGAGTCAACTGCTTGCCGA
TAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12759:5650..6402+

>mRNA_H-paniculata_contig12759.1733.1 ID=mRNA_H-paniculata_contig12759.1733.1|Name=mRNA_H-paniculata_contig12759.1733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig12759:5650..6402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCAACAAGGACGAATGTTGCGAGAAGAAGAGGGATGGGTGCAAC
AAGGACGAATGTTGCGAGAAGAAGAGGGACGACGAGAACTGCGACGACTA
TGAGTGCCCCGACGGCTGGAGAAGGAGGAAGGATTACAAGGGCAAGAAGT
GCTACGATGGATGCAACAAGGATGAATGTTGCGAGAAAAGGGACGACGAG
AACTGCGACGACTATGAGTGCCCCGACGGCTGGAGAAGGAGGAAGGATTA
CAAGGGCAAGAAGTGCTACGATGGATGCAACAAGGATGAATGTTGCGAGA
AAAGGGACAAGGGCGGGCACAGGAACTACTAAGCATTCGTGGAAGATAAC
GTCCTTGGGTCGCTCAAGACGAGAGGATGCGGAGTCAACTGCTTGCCGAT
AAACAAGGGCGGGCACAGGAACTACTAAGCATTCGTGGAAGATAACGTCC
TTGGGTCGCTCAAGACGAGAGGATGCGGAGTCAACTGCTTGCCGATAA
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