mRNA_H-paniculata_contig9624.17323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9624.17323.1
Unique NamemRNA_H-paniculata_contig9624.17323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9624.17323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9624contigH-paniculata_contig9624:2356..2705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.3059597-CDS-H-paniculata_contig9624:2355..27031622931194.3059597-CDS-H-paniculata_contig9624:2355..2703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9624 2356..2703 +
1691481632.7390378-CDS-H-paniculata_contig9624:2355..27031691481632.7390378-CDS-H-paniculata_contig9624:2355..2703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9624 2356..2703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9624.17323.1prot_H-paniculata_contig9624.17323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9624 2356..2703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9624.17323.1

>prot_H-paniculata_contig9624.17323.1 ID=prot_H-paniculata_contig9624.17323.1|Name=mRNA_H-paniculata_contig9624.17323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
VILPCKIIKFTAGVSEDNIPFSQRRHQDCSDCLETTRPWVQTLIRLPSQL
KSKPGNQAENKKARKRWGSRQQGVRNSSQPLRKMLAASSNTRRRYVKNRL
EEISSQLAGEKVSPLE
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mRNA from alignment at H-paniculata_contig9624:2356..2705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9624.17323.1 ID=mRNA_H-paniculata_contig9624.17323.1|Name=mRNA_H-paniculata_contig9624.17323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=350bp|location=Sequence derived from alignment at H-paniculata_contig9624:2356..2705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATACTACCCTGCAAAATTATTAAATTTACCGCAGGCGTCTCTGAGGA
CAACATACCTTTTTCACAACGGCGTCACCAAGACTGTTCTGACTGCCTAG
AGACCACAAGGCCCTGGGTTCAAACCCTAATCCGATTACCGTCACAACTA
AAAAGTAAACCCGGAAATCAAGCGGAAAATAAAAAGGCGCGAAAAAGGTG
GGGGAGCCGGCAGCAGGGGGTACGAAATAGTTCGCAACCCTTGCGGAAAA
TGTTGGCCGCGTCATCCAACACACGTAGGAGATATGTAAAGAATAGGTTG
GAAGAAATATCCTCACAGCTAGCTGGTGAGAAAGTTTCACCTCTTGAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9624:2356..2705+

>mRNA_H-paniculata_contig9624.17323.1 ID=mRNA_H-paniculata_contig9624.17323.1|Name=mRNA_H-paniculata_contig9624.17323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig9624:2356..2705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATACTACCCTGCAAAATTATTAAATTTACCGCAGGCGTCTCTGAGGA
CAACATACCTTTTTCACAACGGCGTCACCAAGACTGTTCTGACTGCCTAG
AGACCACAAGGCCCTGGGTTCAAACCCTAATCCGATTACCGTCACAACTA
AAAAGTAAACCCGGAAATCAAGCGGAAAATAAAAAGGCGCGAAAAAGGTG
GGGGAGCCGGCAGCAGGGGGTACGAAATAGTTCGCAACCCTTGCGGAAAA
TGTTGGCCGCGTCATCCAACACACGTAGGAGATATGTAAAGAATAGGTTG
GAAGAAATATCCTCACAGCTAGCTGGTGAGAAAGTTTCACCTCTTGAAGT
GATACTACCCTGCAAAATTATTAAATTTACCGCAGGCGTCTCTGAGGACA
ACATACCTTTTTCACAACGGCGTCACCAAGACTGTTCTGACTGCCTAGAG
ACCACAAGGCCCTGGGTTCAAACCCTAATCCGATTACCGTCACAACTAAA
AAGTAAACCCGGAAATCAAGCGGAAAATAAAAAGGCGCGAAAAAGGTGGG
GGAGCCGGCAGCAGGGGGTACGAAATAGTTCGCAACCCTTGCGGAAAATG
TTGGCCGCGTCATCCAACACACGTAGGAGATATGTAAAGAATAGGTTGGA
AGAAATATCCTCACAGCTAGCTGGTGAGAAAGTTTCACCTCTTGAA
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