mRNA_H-paniculata_contig12753.1731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12753.1731.1
Unique NamemRNA_H-paniculata_contig12753.1731.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12753.1731.1 vs. uniprot
Match: D8LHN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN0_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.510e-104
Identity = 159/206 (77.18%), Postives = 183/206 (88.83%), Query Frame = 1 
Query:    1 MLEGVAVPETLMLDQYRLVVVAAGAEQAAYTASLVAFARQALAGAKVALAREDENKVREALMVLFETEDVTSADITAQVGEMTRIIAINAGRALPSSQLSILSARAKNVLTTGECPVYKLFLRRTMALLRDTLVEGGMPEDRFEGVLRKSGLFDYKAFLLERVVRPLMVIQRHNEAVFATFYNEIIPLALQTTDPAAMDAHADVLN 618
            MLEGVAVPETLMLD+YRLVV+AA AEQAAYTASLVAFARQ L   ++ LAR DE +VR+ALMVLFETEDVTSADI AQV EMTR++A+NAG+ LP++QLS+LSAR++NVLTTG+CPVYK+FLRRT+ LLRDTLVEGGM E+RF   LRK+GL DYK FLL+RVVRPL+VI+RHNEAVFATFYNEIIPLAL+TT P AM AHA  LN
Sbjct:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLGLLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALN 206
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BLAST of mRNA_H-paniculata_contig12753.1731.1 vs. uniprot
Match: A0A6H5K7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E8_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 8.690e-94
Identity = 158/206 (76.70%), Postives = 183/206 (88.83%), Query Frame = 1 
Query:    1 MLEGVAVPETLMLDQYRLVVVAAGAEQAAYTASLVAFARQALAGAKVALAREDENKVREALMVLFETEDVTSADITAQVGEMTRIIAINAGRALPSSQLSILSARAKNVLTTGECPVYKLFLRRTMALLRDTLVEGGMPEDRFEGVLRKSGLFDYKAFLLERVVRPLMVIQRHNEAVFATFYNEIIPLALQTTDPAAMDAHADVLN 618
            MLEGVAVPETLMLD+YRLVV+AA AEQAAYTASLVAFARQ L   ++ LAR DE ++R+ALMVLFETEDVTSADI AQV EMTR++++NAG+ LP++QLS+LSAR++NVLTTG+CPVYK+FLRRT+ALLRDTLVEGGM E+RF   LRK+GL DYK FLL+RVVRPL+VI+RHNEAVFATFYNEIIPLAL TT P AM AHA  LN
Sbjct: 1105 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERIRDALMVLFETEDVTSADICAQVAEMTRVVSVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALNTTTPQAMGAHARALN 1310
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BLAST of mRNA_H-paniculata_contig12753.1731.1 vs. uniprot
Match: A0A835YNA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.720e-5
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:  427 FEGVLRKSGLFDYKAFLLERVVRPLMVIQRHNEAVFATFYNEIIPLALQTTDPAAMDAHADVLN 618
            F   L   GL     FL ER    L+ +QRH+EAVF  +YNE++PLAL      A DAH   +N
Sbjct:    6 FGAELAARGLGGVAPFLTERAAALLLRVQRHSEAVFTPYYNELVPLAL------AGDAHEAAMN 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12753.1731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHN0_ECTSI2.510e-10477.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7E8_9PHAE8.690e-9476.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNA3_9STRA5.720e-543.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12753contigH-paniculata_contig12753:2660..6165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionT-complex 11
Ec32 orthologEc-26_003730.1
Exons3
Model size720
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12753.1731.1prot_H-paniculata_contig12753.1731.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12753 2750..6165 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.1988006-UTR-H-paniculata_contig12753:2659..27491622928997.1988006-UTR-H-paniculata_contig12753:2659..2749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12753 2660..2749 -
1691480695.6745477-UTR-H-paniculata_contig12753:2659..27491691480695.6745477-UTR-H-paniculata_contig12753:2659..2749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12753 2660..2749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.2343547-CDS-H-paniculata_contig12753:2749..29321622928997.2343547-CDS-H-paniculata_contig12753:2749..2932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 2750..2932 -
1691480695.68579-CDS-H-paniculata_contig12753:2749..29321691480695.68579-CDS-H-paniculata_contig12753:2749..2932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 2750..2932 -
1622928997.25141-CDS-H-paniculata_contig12753:3301..35141622928997.25141-CDS-H-paniculata_contig12753:3301..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 3302..3514 -
1691480695.7005672-CDS-H-paniculata_contig12753:3301..35141691480695.7005672-CDS-H-paniculata_contig12753:3301..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 3302..3514 -
1622928997.2673948-CDS-H-paniculata_contig12753:5931..61651622928997.2673948-CDS-H-paniculata_contig12753:5931..6165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 5932..6165 -
1691480695.7188132-CDS-H-paniculata_contig12753:5931..61651691480695.7188132-CDS-H-paniculata_contig12753:5931..6165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12753 5932..6165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12753.1731.1

>prot_H-paniculata_contig12753.1731.1 ID=prot_H-paniculata_contig12753.1731.1|Name=mRNA_H-paniculata_contig12753.1731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MLEGVAVPETLMLDQYRLVVVAAGAEQAAYTASLVAFARQALAGAKVALA
REDENKVREALMVLFETEDVTSADITAQVGEMTRIIAINAGRALPSSQLS
ILSARAKNVLTTGECPVYKLFLRRTMALLRDTLVEGGMPEDRFEGVLRKS
GLFDYKAFLLERVVRPLMVIQRHNEAVFATFYNEIIPLALQTTDPAAMDA
HADVLNSID*
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mRNA from alignment at H-paniculata_contig12753:2660..6165-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12753.1731.1 ID=mRNA_H-paniculata_contig12753.1731.1|Name=mRNA_H-paniculata_contig12753.1731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3506bp|location=Sequence derived from alignment at H-paniculata_contig12753:2660..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGAAGGGGTGGCCGTTCCCGAAACGTTGATGTTGGATCAGTACCG
GTTGGTCGTTGTGGCGGCGGGGGCGGAGCAGGCGGCGTACACGGCGTCGC
TGGTCGCGTTCGCGAGGCAGGCACTGGCGGGGGCGAAGGTGGCGCTTGCG
CGGGAGGATGAGAACAAAGTGCGAGAGGCGTTGATGGTACTGTTTGAGAC
GGAAGATGTGACTAGCGCTGACATCACTGCTCAGGTTCGTGTCATCATGT
TGGTGTAGTTATTGTTGTTTGAACATATCACCGGCTTCCTGCTTATATTT
TTACTGTTTTTCACCCTATTGTGACTTTGGGAATAACGTAGATCAAAGGT
TGGAGGCTACTGCTATGGTTGATATTCCTCATTCGCTAGGGATTAGTCGT
ATCCCTCATTTTGCTATGTGCGCTCGAGTATTCACCCAACGTAGATATGT
AGGACTGTCTATCGATTATTCCAAACAAACTTTTAATGTTGTTCGGCGAG
GCTGACCGACTCGCCGATGTATGTACTACTGTAGGACATAGTTAGAAGAC
GCTTTATCTTTCTAAATACGCCGAATTGGCACATACGAAAAATGCCCAAT
TTTGGGTCCGGATCGGGTGGTGTTTGGTCCATAACTTTTTGCAGAAACAT
TTGTATGCGCAAAACGAGGTATCTCCGTAGACCCTGAGAAGTGATGGCTT
TCAACGAATCAAGAACAATTCAAAACTCATGTATTTGGAAAAAATTACAA
CGGCAAATGCTATCACTTGCCCCCCAAAACGGAAATCTCACTCCAGCGAA
AGAGACGTTTGTACAAGGGTGCGCCCAGCTGAGATAGTTGCTTAGGGGGG
GGGGTGGGGGGGGGGCTTCCTTGGCACAAGGCGCGAAGAAATATAAGGGT
TTTTTTTGGAGACCCGTCTTATGCTGGAAATGCATATCGGAACATTTTGT
TTTCTATTTTTTGGGCTATATCCCACTATATTCGTTTTTCGGAAGTAACT
TGGTCGATACATCGATTATTTTTTTATATTATCACGTTTCTATTGTTGAT
GCCGAAATAATGACGACGGGATTTTTTTGTTCTTTTCTAAAGTCGAGATA
TTGGCAAATAGCTCATTTTAAGGGTCTAAGGCCATTTCGTATGGGACTTG
AAATTTTTTGATAAAGTGGATATTTTAAGTTATGCAAGTAACCATTTCTT
ATGGGGGATGAAGAGTGGATTTATATATATATTTTTAAATCCAAGTCGAC
GAAATTTTTCTCCATCGGGGGGCGAGGGATTTATAATTATCCACGTGAGA
TTTTCGGATCTTGGATGATTTTAATCTGAAGAACATGGCGAAAAGCTGGA
GCGGCATTGTCTAGGCATGACTCGAAGTACCAGCGGCATCGTCAGAAAAC
ATGGCAGTATCTATCTGATTTTCCAAGAGTACAGCCAGATAGGTACAACA
GGTCGCCCCCGCCACACCTCACACACAAGCTACCATTGTCGCAGTACACA
CACCCTACCATGGTGATGCCAGTTACTGGGATGAATATGCGTTCGGTTGG
TCCGATGATGAGGATCAGATGTTGCTTGCTGTGTGTCAAGCAACCATAAA
CATCACCTGTTACGACACCCTCTGGAGATTTTGACATCGTGCCTACTGCT
GACCTCTAGCTCGTTTGCTAACTACAGCCGGCGTTTTCCCCTAGCTTTTC
AAAACTGAGGATATGACTTTACTCTGTTCTCGCAGCAGCTACAGCCTGTC
CAAGTTTGGAACACCTTAAAAAGTCACAGTTTCCTAAAAAGAAGTGGTGG
TTCAATTTTTGAATTGGATAATTTTCACCTCGATAAATTGAAAATATCTT
TCTTTTTTCTCGAATTATCCAAGTCCCATAAAAAGTGGCCTTAAGGTCAA
ATTATCGGAAAAACTAGAAAATTACGTCTTTTTTGCCAAAAGTTTTCGAT
TTTTGATGTTTTTTTGCCAAAATTCTTCTTGTCAAGTCGTTAGGTTTTGC
ACTCACAGTGCTGATCCAAAATCTACATGACAAAAGTCGTTGTGCTTCTC
GAGATACGGTGAGTGTCTAAATATTATGCCCTAAAGTGGTGTATTTATAT
ACGTGTCTGATGTATCGAGCGAGGAGTCAGGGGAGCTACCTCGCGCTATC
CCAACGCTCTCCCCCGATTGGTGAGGGAGCCTACCGGAGGCGAAAGAAGT
GCGCGTTGTGGCGTCATCTCTGTCCAAAACATCGATATACCGTCGAAGCC
GCGATCGATAAATTCATCATACTGCTTGCTGAGGTGGGATACATCGGAAA
TCTAATGGCCCCGATACACAGCCCTACAGATGTTTGAGCCCCGGGCATGC
ATGATGGAGGGAGAACGCATCGTCCGATACGTTGCAGTCGCGCAATGCCA
GGGACTCCTCTCTAAACAGAGGTTCAGTACTTTTCATGTTCTAAGTGACA
TCAGGAAAGTAGTGACAATGTGGACCAACGGGTAGATAACAGGAAATCAT
TAGGCTTTCCCCCAAAATCTCTCGTAATTTGGTGGTGATCCTTGACAAAT
AAGGGAAGACTGATCTCTCTCTCTCTCTCTCTCCCTAACCAACGGTTTTG
TTGGTTCTGTTGGGGTTACATTTACATTTACATTTACACCGTTGTCACCA
GGTTGGTGAAATGACGCGTATCATCGCCATCAACGCTGGGAGAGCGCTGC
CGTCGTCCCAACTCTCCATCCTCAGCGCTCGCGCGAAGAACGTGCTTACG
ACGGGCGAGTGCCCCGTGTACAAGTTGTTTCTGCGCCGAACGATGGCGCT
CCTGCGAGACACACTCGTCGAGGGCGGCATGCCGGAGGACCGCTTCGAGG
GAGTGCTGCGCAAGGTGAGGAAGAAAAAAGGGAAAGAAAAAGAATGCGAC
GTCGTGTAAGGCCTACTGATGAAAAAGTTCGTTTAACGCGTTTTGTCGTC
CCCATTCAGACGTTTGCTTCAGGCCCTGCCCTCACCGTCCAGAGCCGTGA
CCAAACGTAAGTACATGCGGCACAAACCAGCAGATGGTTTGAAAACTGCA
TAAGTTTGAGGACAGGTTCGCACATGTGAGTTGCCAACCCCGTTGATCCC
TCCCCCTCCCCTCCCTCGTTATCTCACTTCTAATTTATACTCGTGATCCC
CCGTGCACTCCGACATCGTGGTTTAACATCGTCTCATGGTACCCGTTTCT
TGCACTCGGTGGGTAATTTTTTGTGCGTTGAAGTCTGGGCTGTTCGACTA
CAAGGCGTTCCTGCTTGAGCGCGTGGTGCGCCCTCTGATGGTGATCCAAC
GCCACAACGAGGCCGTCTTCGCCACCTTTTACAACGAAATCATCCCGCTC
GCTCTCCAGACCACGGATCCCGCGGCCATGGACGCCCACGCGGACGTGCT
CAACAGTATCGACTAGTTGGGACTGCTGCTGCTGCTGCTGCTGCTAGCTA
TCTTCCTGCATCTCATGCCCCCTCGTTTGTTTGTGTGCGTTTTTTTTTTG
GGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12753:2660..6165-

>mRNA_H-paniculata_contig12753.1731.1 ID=mRNA_H-paniculata_contig12753.1731.1|Name=mRNA_H-paniculata_contig12753.1731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig12753:2660..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGAAGGGGTGGCCGTTCCCGAAACGTTGATGTTGGATCAGTACCG
GTTGGTCGTTGTGGCGGCGGGGGCGGAGCAGGCGGCGTACACGGCGTCGC
TGGTCGCGTTCGCGAGGCAGGCACTGGCGGGGGCGAAGGTGGCGCTTGCG
CGGGAGGATGAGAACAAAGTGCGAGAGGCGTTGATGGTACTGTTTGAGAC
GGAAGATGTGACTAGCGCTGACATCACTGCTCAGATGCTGGAAGGGGTGG
CCGTTCCCGAAACGTTGATGTTGGATCAGTACCGGTTGGTCGTTGTGGCG
GCGGGGGCGGAGCAGGCGGCGTACACGGCGTCGCTGGTCGCGTTCGCGAG
GCAGGCACTGGCGGGGGCGAAGGTGGCGCTTGCGCGGGAGGATGAGAACA
AAGTGCGAGAGGCGTTGATGGTACTGTTTGAGACGGAAGATGTGACTAGC
GCTGACATCACTGCTCAGGTTGGTGAAATGACGCGTATCATCGCCATCAA
CGCTGGGAGAGCGCTGCCGTCGTCCCAACTCTCCATCCTCAGCGCTCGCG
CGAAGAACGTGCTTACGACGGGCGAGTGCCCCGTGTACAAGTTGTTTCTG
CGCCGAACGATGGCGCTCCTGCGAGACACACTCGTCGAGGGCGGCATGCC
GGAGGACCGCTTCGAGGGAGTGCTGCGCAAGGTTGGTGAAATGACGCGTA
TCATCGCCATCAACGCTGGGAGAGCGCTGCCGTCGTCCCAACTCTCCATC
CTCAGCGCTCGCGCGAAGAACGTGCTTACGACGGGCGAGTGCCCCGTGTA
CAAGTTGTTTCTGCGCCGAACGATGGCGCTCCTGCGAGACACACTCGTCG
AGGGCGGCATGCCGGAGGACCGCTTCGAGGGAGTGCTGCGCAAGTCTGGG
CTGTTCGACTACAAGGCGTTCCTGCTTGAGCGCGTGGTGCGCCCTCTGAT
GGTGATCCAACGCCACAACGAGGCCGTCTTCGCCACCTTTTACAACGAAA
TCATCCCGCTCGCTCTCCAGACCACGGATCCCGCGGCCATGGACGCCCAC
GCGGACGTGCTCAACAGTATCGACTAGTCTGGGCTGTTCGACTACAAGGC
GTTCCTGCTTGAGCGCGTGGTGCGCCCTCTGATGGTGATCCAACGCCACA
ACGAGGCCGTCTTCGCCACCTTTTACAACGAAATCATCCCGCTCGCTCTC
CAGACCACGGATCCCGCGGCCATGGACGCCCACGCGGACGTGCTCAACAG
TATCGACTAG
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