mRNA_H-paniculata_contig96.17302.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig96.17302.1
Unique NamemRNA_H-paniculata_contig96.17302.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig96.17302.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.580e-55
Identity = 123/263 (46.77%), Postives = 159/263 (60.46%), Query Frame = 1 
Query:    1 MHVASPALPESALRLLFYRAVATQHTTPSVSGGNSEGGDIASHRGARQSNTGSRVRRESMERSNRIGTEGGKGSSVGEGTKSGGNGVGGVKSVTPADLARAVVDFPLACEGLASLINATASTHGVRELLKQAVFRAKEAIEEAEKIVGAINDGQAGVAGRTSNGGGDGARVVQSEVEAVKARTSQLKAFISNAGTSRSPLDASKLWISRRMLVTESALLRTYGGILPTIKAQDAIRQGRRVRLRCALRRWQAVWRKKTLSAPP 789
            MHVASP LPE+ALR LF++A  T    PS       GGD    RG   +            R++   +  G+  S  +  KS G      ++ + + LARA+  FPLACEGLA L+ +TA+    R LLKQ   +AKEA+EE EK+V +I + Q   AG+          V ++E+ AV+ARTSQL+AF+ NA TSRS LD SKLWISRRMLV E+ LLR YGG+ PT +AQDAIRQGRRVRLR   R ++  WR+  +S PP
Sbjct:    1 MHVASPGLPEAALRHLFFQAATTGAPRPSSLPAARAGGD---GRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGETTSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKVVASIREAQGTPAGQRGXXXXXXXFVPEAEISAVEARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPP 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig96.17302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR5_ECTSI2.580e-5546.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig96contigH-paniculata_contig96:38433..40483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004270.1
Exons4
Model size789
Cds size789
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig96.17302.1prot_H-paniculata_contig96.17302.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig96 38433..40483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.9827437-CDS-H-paniculata_contig96:38432..388671622931190.9827437-CDS-H-paniculata_contig96:38432..38867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 38433..38867 +
1691481631.3739307-CDS-H-paniculata_contig96:38432..388671691481631.3739307-CDS-H-paniculata_contig96:38432..38867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 38433..38867 +
1622931191.0004191-CDS-H-paniculata_contig96:39338..394931622931191.0004191-CDS-H-paniculata_contig96:39338..39493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 39339..39493 +
1691481631.3830473-CDS-H-paniculata_contig96:39338..394931691481631.3830473-CDS-H-paniculata_contig96:39338..39493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 39339..39493 +
1622931191.0117645-CDS-H-paniculata_contig96:39674..398151622931191.0117645-CDS-H-paniculata_contig96:39674..39815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 39675..39815 +
1691481631.3946843-CDS-H-paniculata_contig96:39674..398151691481631.3946843-CDS-H-paniculata_contig96:39674..39815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 39675..39815 +
1622931191.0857015-CDS-H-paniculata_contig96:40425..404831622931191.0857015-CDS-H-paniculata_contig96:40425..40483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 40426..40483 +
1691481631.4048207-CDS-H-paniculata_contig96:40425..404831691481631.4048207-CDS-H-paniculata_contig96:40425..40483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 40426..40483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig96.17302.1

>prot_H-paniculata_contig96.17302.1 ID=prot_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MHVASPALPESALRLLFYRAVATQHTTPSVSGGNSEGGDIASHRGARQSN
TGSRVRRESMERSNRIGTEGGKGSSVGEGTKSGGNGVGGVKSVTPADLAR
AVVDFPLACEGLASLINATASTHGVRELLKQAVFRAKEAIEEAEKIVGAI
NDGQAGVAGRTSNGGGDGARVVQSEVEAVKARTSQLKAFISNAGTSRSPL
DASKLWISRRMLVTESALLRTYGGILPTIKAQDAIRQGRRVRLRCALRRW
QAVWRKKTLSAPP
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mRNA from alignment at H-paniculata_contig96:38433..40483+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig96.17302.1 ID=mRNA_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2051bp|location=Sequence derived from alignment at H-paniculata_contig96:38433..40483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGTCGCCAGCCCGGCACTCCCGGAGTCTGCGCTTCGTCTCCTATT
CTACCGCGCCGTTGCGACGCAGCACACCACGCCCTCCGTTTCTGGTGGCA
ATAGTGAAGGGGGTGATATTGCTTCACATCGAGGAGCCAGGCAAAGCAAC
ACCGGTAGTCGTGTACGAAGAGAATCCATGGAGAGATCGAACAGAATAGG
CACGGAAGGGGGGAAAGGGTCGTCGGTAGGGGAGGGCACCAAGAGTGGAG
GCAACGGGGTGGGTGGAGTGAAATCAGTTACACCAGCAGATCTGGCCCGA
GCGGTCGTGGATTTTCCCTTGGCATGTGAAGGACTGGCGTCGCTTATCAA
CGCAACTGCGAGCACACATGGGGTGCGAGAGCTGCTCAAACAGGCAGTAT
TTCGGGCCAAGGAGGCGATCGAAGAGGCAGAGAAGGTGTTTCGTTCTCAC
TTGTTTTCTGAAGTACCCAGTAAGTAATCCGCGATTTGCTGTACCATAAG
CGATGGATCCGTGGCAATTGGGTTTCAGTCACGTCCTCGTGTTGCTGTAC
TTCTTTTATCCCCAACGCACCTCGGCACCTGGAGCCTGGGGACATAAACG
GTTTAACGATAATAAATAACCAACATCCCGTGAGAGACCAGCACTGAAAT
CTGACGCATATTTCCTTCTAGGACTTGTGGTAGCGTGTCCAGTCCTCACA
GCATCATACCCGCAGCGAGAACATGGCATATACGTGGTCACTTGCACAGA
AAGGAAATTTTATCTGCCTGACGCAAAGAACCACTGGGAGAGGGCAAACC
TAGTTCTACATTGATGGAAACTCACTTGTATGTTAGCTCGCTGCACAAGG
CTTTCATAACCACTCGTCATCCTAACCGATCGATCCTTAAACGAAACCTT
TACAAGATTGTTGGAGCGATTAACGACGGTCAAGCAGGCGTTGCTGGACG
CACGAGCAATGGGGGCGGCGACGGTGCGAGGGTTGTACAAAGTGAGGTTG
AGGCGGTTAAGGCGAGGACAAGTCAGCTGAAGGCTTTCATTTCTAACGCA
GGGACATCAAGGTGAGTCTGATGAAGATGGGGCTGTGCACTATGACTATT
ATTTCATTCTAACCAGAAGCCATGTGCTGGGTGCAACCGCGCTTAGCCCT
GAGTTAGCAATATCTATTAGCTGGAGATCTAATTGACGCATCCCGCGGTT
CGGTGTATCGGATCTTCGCGACGTCCATTCAACATCCAATAGGAGTCCGC
TGGATGCCTCGAAATTGTGGATTAGTCGAAGGATGCTGGTGACCGAATCG
GCGTTGCTTCGGACATACGGGGGAATTTTACCTACCATAAAGGCTCAAGA
CGCCATCAGACAGGGCCGAAGAGTACGGTTGAGGTGCGTTCCAAAGCGGA
TTCGTGCTGTCGGTATCGCACCAGCAGTGCGTGCTGGTCATCCTCATCAA
TTCGTCTTAGACATGGTGTTGGGGGGGTGTCATTGTGATTGATTGAAGGG
GGCAAGAGTACTCTGTCGTGGGCTCCCTATCCTACAGGTACAGCATAACA
GATGGCCACTGAGGTGTCTTACGCTACCTTGCCAATAGTATGCCCACTTT
TGACTTTGCGAAGGGGTTGCCAACGTCTTGATACTTTTATGAAGTTCGGC
CCACCCACCACAAACCTCAAAAGTCTTTTACAAACTTTGATAAAATGACC
ACAAGTTTGGACGTGGTGTTTTTTGTCCCAATGTTCCGAAAAGTAGCCCT
CTGGCCAACTGAGATGTTCCAGAAATTGAGTGGAACGTATAAAAACCGTC
CTCTCACTTTCGCTTCCAGGAATAGCGTGACCGCCATCACCTCCTCCTCA
AACTCTTAGTGTACTGCGCCCGAATTCGTTGGGCTGTGACCAACCATCTG
TTATGGCCGCCTGAGAGGCTGCACTTGAAAAGACCTACGGCAATCCTTCG
AAACTGACTCCCTCTCACAGTACAGGTCCAATTGTCGTGGTAGGTGTGCT
TTGCGGAGGTGGCAAGCGGTGTGGCGGAAGAAGACGTTATCTGCACCACC
G
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Coding sequence (CDS) from alignment at H-paniculata_contig96:38433..40483+

>mRNA_H-paniculata_contig96.17302.1 ID=mRNA_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig96:38433..40483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGTCGCCAGCCCGGCACTCCCGGAGTCTGCGCTTCGTCTCCTATT
CTACCGCGCCGTTGCGACGCAGCACACCACGCCCTCCGTTTCTGGTGGCA
ATAGTGAAGGGGGTGATATTGCTTCACATCGAGGAGCCAGGCAAAGCAAC
ACCGGTAGTCGTGTACGAAGAGAATCCATGGAGAGATCGAACAGAATAGG
CACGGAAGGGGGGAAAGGGTCGTCGGTAGGGGAGGGCACCAAGAGTGGAG
GCAACGGGGTGGGTGGAGTGAAATCAGTTACACCAGCAGATCTGGCCCGA
GCGGTCGTGGATTTTCCCTTGGCATGTGAAGGACTGGCGTCGCTTATCAA
CGCAACTGCGAGCACACATGGGGTGCGAGAGCTGCTCAAACAGGCAGTAT
TTCGGGCCAAGGAGGCGATCGAAGAGGCAGAGAAGATGCACGTCGCCAGC
CCGGCACTCCCGGAGTCTGCGCTTCGTCTCCTATTCTACCGCGCCGTTGC
GACGCAGCACACCACGCCCTCCGTTTCTGGTGGCAATAGTGAAGGGGGTG
ATATTGCTTCACATCGAGGAGCCAGGCAAAGCAACACCGGTAGTCGTGTA
CGAAGAGAATCCATGGAGAGATCGAACAGAATAGGCACGGAAGGGGGGAA
AGGGTCGTCGGTAGGGGAGGGCACCAAGAGTGGAGGCAACGGGGTGGGTG
GAGTGAAATCAGTTACACCAGCAGATCTGGCCCGAGCGGTCGTGGATTTT
CCCTTGGCATGTGAAGGACTGGCGTCGCTTATCAACGCAACTGCGAGCAC
ACATGGGGTGCGAGAGCTGCTCAAACAGGCAGTATTTCGGGCCAAGGAGG
CGATCGAAGAGGCAGAGAAGATTGTTGGAGCGATTAACGACGGTCAAGCA
GGCGTTGCTGGACGCACGAGCAATGGGGGCGGCGACGGTGCGAGGGTTGT
ACAAAGTGAGGTTGAGGCGGTTAAGGCGAGGACAAGTCAGCTGAAGGCTT
TCATTTCTAACGCAGGGACATCAAGATTGTTGGAGCGATTAACGACGGTC
AAGCAGGCGTTGCTGGACGCACGAGCAATGGGGGCGGCGACGGTGCGAGG
GTTGTACAAAGTGAGGTTGAGGCGGTTAAGGCGAGGACAAGTCAGCTGAA
GGCTTTCATTTCTAACGCAGGGACATCAAGGAGTCCGCTGGATGCCTCGA
AATTGTGGATTAGTCGAAGGATGCTGGTGACCGAATCGGCGTTGCTTCGG
ACATACGGGGGAATTTTACCTACCATAAAGGCTCAAGACGCCATCAGACA
GGGCCGAAGAGTACGGTTGAGGAGTCCGCTGGATGCCTCGAAATTGTGGA
TTAGTCGAAGGATGCTGGTGACCGAATCGGCGTTGCTTCGGACATACGGG
GGAATTTTACCTACCATAAAGGCTCAAGACGCCATCAGACAGGGCCGAAG
AGTACGGTTGAGGTGTGCTTTGCGGAGGTGGCAAGCGGTGTGGCGGAAGA
AGACGTTATCTGCACCACCGGTGTGCTTTGCGGAGGTGGCAAGCGGTGTG
GCGGAAGAAGACGTTATCTGCACCACCG
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