mRNA_H-paniculata_contig9556.17275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9556.17275.1
Unique NamemRNA_H-paniculata_contig9556.17275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A6H5KJD0_9PHAE (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJD0_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 4.200e-93
Identity = 163/278 (58.63%), Postives = 200/278 (71.94%), Query Frame = 1 
Query:  346 AAWQWESPDPPAELTEEQNQMLDVVIEEVRRSPLSS--AVTHGGRSAIWRYLNAARWGTE-LSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGA-GPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTREQQRELLLNYISPEDLRAGQLGCPEEPPFNAEAYLAGGDGEG 1167
            + W WE   PP  LT EQ  ML+  I EV+ SPL S  AV +GGR+A+WRYL  A+W  E + GKRVS +FL+TL WR+   +D VL D+ H  + + EA++GKLFVRGT L  RPLIW+H G E++A  P +++R LVYTVERAIASM PE     +KGQFCVVIDCT  G  G LPSL F ++AV MLM RYPSRLG LF+VN G  VY+LW+AISLLL PVTREK+VVVSGT +QQRE+LL +IS + L  G+LG    PPF+AE+YL GGD  G
Sbjct:   17 STWSWECESPPPSLTPEQASMLETTIAEVQASPLCSDAAVANGGRTAVWRYLEGAQWRLEPVRGKRVSDFFLDTLAWRQDGGVDTVL-DRAH--TFVDEASSGKLFVRGTSLLGRPLIWVHAGWEDSASGPEASLRFLVYTVERAIASMEPETSTPASKGQFCVVIDCTATGGDGQLPSLAFVREAVSMLMLRYPSRLGNLFIVNAGNMVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHISEDALEGGRLGLKGAPPFHAESYLKGGDAGG 291
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BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A835YZF0_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.670e-27
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 1 
Query:  385 LTEEQNQMLDVVIEEVRRSPLSSAVTHG-----GRSAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRG-TCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSG 1035
            L+E+Q+ M+   + +++  P+      G       +  WRYL+AA W   +  K +S Y  +TLEWR+ L + ++  +   + +L     TG ++V G       PL+   L R          +  +VY +ERA+  +  E    +A   FCV+ +C    AG +P L   ++AV +LM  YPSRL +L++VNPG A    W+ +  LLE  TR KIV V G
Sbjct:    3 LSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQ---RALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRG 222
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A6A5C3G4_NAEFO (CRAL-TRIO domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C3G4_NAEFO)

HSP 1 Score: 102 bits (253), Expect = 8.200e-20
Identity = 77/236 (32.63%), Postives = 126/236 (53.39%), Query Frame = 1 
Query:  373 PPAELTEEQNQMLDVVIEEVRRSPLSSAVTHG-GRSAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCT-FAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTREQQRELLLNYI 1074
            P + LTEEQN++L+  I+ V    L+         +A+ R+L A  +    + K +++     LEWR+    D +  ++  +     EA++GKLF RG    +RP++++   REN+  D   N++LLVYT+ERA+ +M PE +      Q C +ID   ++    LP L  A+Q + +L   YP RLG  F+V+        W+AIS  + PVT+ KI  V+G   ++ ++   YI
Sbjct:   34 PRSALTEEQNEILNDFIKRVDYDRLTDRERRFLDEAALIRFLRARDYDINKAEKLMNT----CLEWRRSFKPDEITAEEVDS-----EASSGKLFQRGFDKMNRPIVYMFPARENST-DYEKNIKLLVYTLERAVDAM-PEGVE-----QMCWIIDFNGYSTRNSLP-LSVAKQTLNILNDCYPERLGACFMVDTPFIFNIFWKAISPFINPVTKNKIHFVNGKDIEKAKIFGKYI 252
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: D2V0F0_NAEGR (CRAL-TRIO domain-containing protein n=2 Tax=Naegleria gruberi TaxID=5762 RepID=D2V0F0_NAEGR)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-18
Identity = 73/235 (31.06%), Postives = 120/235 (51.06%), Query Frame = 1 
Query:  373 PPAELTEEQNQMLDVVIEEVRRSPLSSAVT-HGGRSAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTREQQRELLLNYI 1074
            P   LT+EQN++L+  I+++    L+     +    ++ R+L A  +    + K ++S     LEWR+    D +      A  L  E+++GKLF RG    +RP+I++   REN+  D   N++LLVYT+ERA+ +M PE +      Q   +ID         P    A+Q + +L   YP RLG  F+V+        W+AIS  + PVT+ KI  V+G   ++ ++   +I
Sbjct:   25 PRTSLTQEQNEILNDFIKKIDYDSLTDRERKYLDEPSLLRFLRARDYDLNKAEKLMNS----CLEWRRTFKPDEIT-----AKELEDESSSGKLFQRGFDKNNRPIIYMFPARENST-DYEKNIKLLVYTMERAVDAM-PEGVE-----QMTWIIDFNGYTTRNAPPFSVAKQTLSILNECYPERLGACFMVDTPFIFNIFWRAISPFINPVTKNKIHFVNGKESEKAKIFGKHI 243
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A7S1VXY9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXY9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.890e-11
Identity = 54/203 (26.60%), Postives = 98/203 (48.28%), Query Frame = 1 
Query:  556 TLEWRKLLAIDRVLE------DKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTREQQRELLLNYISPEDLRAGQLGCPEEPPFNAEAYL 1146
            +L WR+   ++++        D      + +E  TGK++ RG     R +++LH G EN+  + ++N+R LVY++ERAIA+ A ++     K +F +VI          P++   +  V +L   YP R+ + ++ +P +     W  +   ++PVTR+K+    G  +  R +L+     E       G  E   FN+  YL
Sbjct:  138 SLAWRRDFEVEKIKNCFTPSGDITMRKIIAQENETGKIYARGYDRDGRAILYLHPGLENSN-NEMNNMRHLVYSLERAIATTAKKS----GKEKFNIVISYKGFKLKNAPAISVVRHTVDILQNHYPERMYRAYVCDPPLVFRTFWSIVKPFIDPVTRDKLQFCHG--KAGRHVLMERFDLETTERCACGTRELRAFNSTEYL 333
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A2B7ZMR7_9EURO (CRAL-TRIO domain-containing protein n=2 Tax=Emmonsia crescens TaxID=73230 RepID=A0A2B7ZMR7_9EURO)

HSP 1 Score: 76.3 bits (186), Expect = 7.200e-11
Identity = 60/235 (25.53%), Postives = 110/235 (46.81%), Query Frame = 1 
Query:  367 PDPPAELTEEQNQMLDVVIEEVRR---SPLSSA-------VTHGGR-----SAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVV 1026
            P+PPAELT EQ    D+++  V      P +SA       +T   R       + RYL A +W    +  R+      TL WR+   +D++  D      +  E  TGK  + G  +  RP ++L+  R+N        ++ LV+ +ER +  M P+      +    ++++ +   +G   ++   +Q + +L   YP RLG+  +VN    +Y  ++ I+  ++P+TR K+ +
Sbjct:   74 PEPPAELTSEQQSKYDLLLTTVSEWTTVPTTSAKNAPTEPITDDDRMFLTRECLLRYLRATKWDVPAAINRLRG----TLTWRREYGLDKLTPDY-----ISIENETGKQVILGYDVNARPCLYLNPARQNTEQSD-RQIQHLVFMLERVVDLMGPD------QESLALLVNFSDTRSGQNATIGQGRQTLSILQNHYPERLGRALVVNIPFLIYGFFKLITPFIDPLTRTKLKI 292
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A137QER3_9AGAR (CRAL-TRIO domain-containing protein C23B6.04c n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QER3_9AGAR)

HSP 1 Score: 73.9 bits (180), Expect = 2.240e-10
Identity = 57/185 (30.81%), Postives = 90/185 (48.65%), Query Frame = 1 
Query:  472 RSAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAG--PLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKI 1020
            R  I RY+ AA+W    + K + +    TLEWR+    D +  D+        E+ TG++ + G     +P+I++  GREN     +  +R LV+ VERA   M P        GQ  +VI   +        P +  A++ + +L   Y   LG   +VN  + +   ++AISL L+PVTR+KI
Sbjct:   62 RDTIPRYMRAAKWNFPDAQKHIKA----TLEWRRAFRPDLIPPDEVKI-----ESETGEIILTGFDRGGQPIIYIRPGRENTETS-LRQLRYLVWCVERAKDLMPP--------GQEYLVIIFVYESTTLHTNPCMSVARKVLNILQQHYVETLGSALIVNLPLLLTCFYKAISLFLDPVTRDKI 228
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A7S0HB85_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HB85_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 5.340e-10
Identity = 66/229 (28.82%), Postives = 100/229 (43.67%), Query Frame = 1 
Query:  532 RVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTC-LFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTREQQRELLLNYISPEDLRAGQLGCPEEPPFNAEAYLAGGDGEGMPPDGGRDA*LSGRGA 1215
            + ++   ETL WR    + ++    E  A +  E+ TGKL V  +     RP++ +   R  N  D    +  LVY +ERA     P  +   A G+   VID           ++ ++  + +L   YP RL +  L+N       LW A++  ++PVTR KIV V+G+ EQQ+  L        L  G LG      ++  AY A            RDA L+  GA
Sbjct:   54 KATTMLKETLRWRHSFGVSKL---GERHAVIRTESETGKLRVSDSVDRAGRPVLVM-TPRAENTSDHDGQILNLVYHLERATGGRGP--VDGAADGKLVTVIDFKGWSLRNAAPMKTSRATLSILQNHYPERLHRFLLLNVPTLFTVLWNAMNPFIDPVTRAKIVFVTGSAEQQQAALRECFDLAQLEEG-LGGLAPLHWDPAAYFA------------RDAELASAGA 263
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A5N5XC34_9EURO (CRAL-TRIO domain-containing protein n=1 Tax=Aspergillus leporis TaxID=41062 RepID=A0A5N5XC34_9EURO)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-9
Identity = 59/233 (25.32%), Postives = 105/233 (45.06%), Query Frame = 1 
Query:  367 PDPPAELTEEQNQMLDVVIEEVRR---SPLSSA-------VTHGGR-----SAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKI 1020
            P PPAELT +Q +  + V+E V      P +SA       +T   R       + RYL A +W    +  R+      TL WR+   ++++  +      +  E  TGK  + G  +  RP ++L L    N       +  LV+ +ER I  M P+      +    ++++     +G   S+  A+Q +  L   YP RLG+  ++N    +   ++ I+  ++P+TR+K+
Sbjct:   80 PSPPAELTSDQQEKYNSVVETVSAWTTVPTTSAKNAPTEPITENERMFLTRECLLRYLRATKWNASEAVARLQ----RTLTWRREYGVEKLTPEY-----ISVENETGKQVILGYDIHARPCLYL-LPSNQNTEKSDRQIEHLVFMLERVIDLMGPD------QETLALIVNYNETKSGQNASVGQAKQTLSFLQNHYPERLGRALVINMPFMIMGFFKLITPFIDPLTRQKL 296
[Close]
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Match: A0A8H5ZY65_ASPBU (CRAL-TRIO domain-containing protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A8H5ZY65_ASPBU)

HSP 1 Score: 71.2 bits (173), Expect = 2.590e-9
Identity = 60/241 (24.90%), Postives = 109/241 (45.23%), Query Frame = 1 
Query:  367 PDPPAELTEEQNQMLDVVIEEVRR---SPLSSA-------VTHGGR-----SAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAIDRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVSNVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQQAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSGTRE 1044
            P PPAELT +Q +  + V+E V      P +SA       +T   R       + RYL A +W    +  R+      TL WR+   ++++  +      +  E  TGK  + G  +  RP ++L L    N       ++ LV+ +ER I  M P+      +    ++++ +   +G   S+  A+Q +  L   YP R+G+  ++N    +   ++ I+  ++P+TR+K+      RE
Sbjct:   77 PPPPAELTSDQQEKYNSVLEAVSAWTTVPTTSAKNAPKEPITDNERMFLTRECLLRYLRATKWNVPEAVTRLE----RTLTWRREYGVEKLTPE-----FISVENETGKQVILGYDIHARPCLYL-LPSNQNTEKSDRQIQHLVFMLERIIDLMGPD------QETLALIVNYSDTKSGQNASVGQAKQTLNFLQNHYPERMGRALVINMPFLIMGFFKLITPFIDPLTRQKLKFNEDLRE 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9556.17275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KJD0_9PHAE4.200e-9358.63CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YZF0_9STRA8.670e-2732.29CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A6A5C3G4_NAEFO8.200e-2032.63CRAL-TRIO domain-containing protein n=2 Tax=Naegle... [more]
D2V0F0_NAEGR1.290e-1831.06CRAL-TRIO domain-containing protein n=2 Tax=Naegle... [more]
A0A7S1VXY9_9STRA1.890e-1126.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2B7ZMR7_9EURO7.200e-1125.53CRAL-TRIO domain-containing protein n=2 Tax=Emmons... [more]
A0A137QER3_9AGAR2.240e-1030.81CRAL-TRIO domain-containing protein C23B6.04c n=1 ... [more]
A0A7S0HB85_9EUKA5.340e-1028.82Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A5N5XC34_9EURO1.980e-925.32CRAL-TRIO domain-containing protein n=1 Tax=Asperg... [more]
A0A8H5ZY65_ASPBU2.590e-924.90CRAL-TRIO domain-containing protein n=2 Tax=Asperg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9556contigH-paniculata_contig9556:1140..6003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue2.6e-81
Seed eggNOG ortholog2880.D8LGX4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-14_001570.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2631
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9556.17275.1prot_H-paniculata_contig9556.17275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9556 2574..5718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.2864907-UTR-H-paniculata_contig9556:1139..25731622931186.2864907-UTR-H-paniculata_contig9556:1139..2573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9556 1140..2573 -
1691481629.4773233-UTR-H-paniculata_contig9556:1139..25731691481629.4773233-UTR-H-paniculata_contig9556:1139..2573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9556 1140..2573 -
1622931186.384703-UTR-H-paniculata_contig9556:5718..60031622931186.384703-UTR-H-paniculata_contig9556:5718..6003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9556 5719..6003 -
1691481629.5409858-UTR-H-paniculata_contig9556:5718..60031691481629.5409858-UTR-H-paniculata_contig9556:5718..6003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9556 5719..6003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.3077278-CDS-H-paniculata_contig9556:2573..27681622931186.3077278-CDS-H-paniculata_contig9556:2573..2768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 2574..2768 -
1691481629.490307-CDS-H-paniculata_contig9556:2573..27681691481629.490307-CDS-H-paniculata_contig9556:2573..2768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 2574..2768 -
1622931186.3244724-CDS-H-paniculata_contig9556:3163..33341622931186.3244724-CDS-H-paniculata_contig9556:3163..3334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 3164..3334 -
1691481629.5016327-CDS-H-paniculata_contig9556:3163..33341691481629.5016327-CDS-H-paniculata_contig9556:3163..3334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 3164..3334 -
1622931186.340363-CDS-H-paniculata_contig9556:4255..43241622931186.340363-CDS-H-paniculata_contig9556:4255..4324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 4256..4324 -
1691481629.5201306-CDS-H-paniculata_contig9556:4255..43241691481629.5201306-CDS-H-paniculata_contig9556:4255..4324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 4256..4324 -
1622931186.3642287-CDS-H-paniculata_contig9556:5241..57181622931186.3642287-CDS-H-paniculata_contig9556:5241..5718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 5242..5718 -
1691481629.5316489-CDS-H-paniculata_contig9556:5241..57181691481629.5316489-CDS-H-paniculata_contig9556:5241..5718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9556 5242..5718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9556.17275.1

>prot_H-paniculata_contig9556.17275.1 ID=prot_H-paniculata_contig9556.17275.1|Name=mRNA_H-paniculata_contig9556.17275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
MSGSVQQTTTHNHGKDDENDAAWQWESPDPPAELTEEQNQMLDVVIEEVR
RSPLSSAVTHGGRSAIWRYLNAARWGTELSGKRVSSYFLETLEWRKLLAI
DRVLEDKEHAASLLKEAATGKLFVRGTCLFHRPLIWLHLGRENNALDPVS
NVRLLVYTVERAIASMAPEALGAKAKGQFCVVIDCTFAGAGPLPSLQFAQ
QAVRMLMARYPSRLGKLFLVNPGVAVYFLWQAISLLLEPVTREKIVVVSG
TREQQRELLLNYISPEDLRAGQLGCPEEPPFNAEAYLAGGDGEGMPPDGG
RDA*
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mRNA from alignment at H-paniculata_contig9556:1140..6003-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9556.17275.1 ID=mRNA_H-paniculata_contig9556.17275.1|Name=mRNA_H-paniculata_contig9556.17275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4864bp|location=Sequence derived from alignment at H-paniculata_contig9556:1140..6003- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCGTTTCCCCCTGATGGCAATTTGAATTACGCATCACTTAAAAGGG
TATAACCCTTCTGCCTGCACAGCTTTTTTCCCAACAGCAGCGAAGACACT
GAAGTCAATCGGCAAGCGAGCGCCCAAGGCGGGGTTGGTTCTGGCATAGT
TTTAGCGTATTTTCTGCTTTCGTCATCGCCAAGTACGCAGGTCGTGCAGC
CAGTTATACGGTACAGCCGATACAACGACAGAGAATATACACAAAGGAGA
GAAGAGGTCGTGGGCAGGCAAAACGCAGAAGATAGATGAGTGGGTCGGTG
CAGCAGACGACAACACACAACCATGGCAAGGATGATGAAAATGACGCAGC
CTGGCAATGGGAGTCCCCCGATCCTCCGGCCGAGCTCACTGAAGAGCAAA
ATCAGATGCTCGACGTCGTGATAGAAGAAGTGCGGAGGTCACCCCTCAGC
TCCGCAGTCACACACGGAGGCAGGTCTGCTATATGGCGCTATCTGAACGC
CGCTAGATGGGGCACCGAATTATCGGGAAAGCGCGTGTCGAGCTACTTTC
TGGAAACGTTGGAGTGGCGGAAACTGCTGGCGATAGATCGTGTGCTCGAG
GATAAAGAGCATGCAGCGAGCTTGCTGAAAGAAGCGGCGACGGGCAAGCT
GTTCGTCAGGGGCACGTGTCTTTTCCATCGGCCTCTGATCTGGTTGCACC
TTGGCCGGGAGAATAACGCGCTGGATCCTGTCTCGAATGTTCGATTATTG
GTGTACACTGTGGTACGTACACACAGTACAGAACCTAGTACAGACAGTTA
TTCCGTGATCAAGGTATCAATACCTGGTATACTACCAAAACCTGTACGCG
CAAGAAAGTAGAGGTGGGCGATTAGAACTCGGACGTCGTTGGCTGTACGT
CGCATCGGAGGTTGCACCAGTATCCCGGCATCTACATCTTGCCTTCTCTC
CCCTCAACAATCCTCCCCCCTCTCAACATATATGCATGTGACTATTTTTT
CGATACGATCTGTGCTGGCCTCCTCTGTGTGGTATGGCCCAACTCAGCAA
GTATGACTCGAGTCTCTCAGGAGTCTTGTTTAAATGTTACAGAAAGAAAC
CTCTCCGCCACAAACAAGCCGTATGCAGCTGCAGCAGTAAATCCCTCTAC
ACTTATAAATGCCAACGCCGCGTAAATTCATTGACGATCGTTAGATGGAC
AATGAAATTAGCGAGGACCGAGAAAAGAGAAATGGGTTCTGTGCTGGGTC
TCTGCGGCGGTCTCTTCGTCTGTTGACCAGTCACAAAACCCTTCGGCCAA
TCACACAGCTTCTTCGTTTCTCCGTTTCTTGCCAAGTTCACTTTGCGTTC
CCTCGATAAGACACCCCCTCTAGTATGTGAAGACATCGCTGCTCAGTCCA
GCACAGCAGGGAGATCAATTCATACACCTGTCGAGCCCTGGATCCTTGAA
CGGTAATACATCAATTCAGTTAACGTTTGACGAATCAGTATTGTGGGCCA
AGCGAAATCTTGAAAGTGCGTCTACCCACCCATCCAGTTTTGCACATTTG
TCAAGTCGGCTTGTGGCAAAGTGTCCGTGGTCATGTTCCAATGGTTTGTT
TTACTGTACTTTGACCTTCCACAAAAGAAATAAACAAATGTGCTTTCCCG
TTGGTTCACTCCTCAATACTGATCACCAGGAACGAGCTATCGCGAGCATG
GCGCCCGAAGCGTTAGGAGCGAAAGCCAAGGGCCAGTTCTGTGTTGTGGT
AAGTCGATCCTTATGTATTCGAAAAGTTACATACAGCTAAGTGTGGCTCC
GATGTCTGCTTCTAATTTTCTGTCTTCAAACTTCGGCACGGGGCACGGGG
GGCGGCGGGGGGGGGGGGTCCACCCCCCGTCGAATCAAGGCGACTTTTCC
CAAACCGCAGTGGGACCTTGCATGATTGTCCCCGGCCAACCCTGTTACGT
TCGTCAATGAATCAGCCAATCCGTTTTCGTTTTCTTGTGTTACAAGTGTA
TTTACTATTTAATTTTGCCAAGAGGTGCTAATTACTCTGTCAAAGTTACA
TTACTGATATGTGAGACTCTCGTGATCCCCCCCTCTTCGTCCGTTCACTT
TGTAGAGGATAAAAGTAATCTAGCAGCTTGAAGATTCTCAACTTTCTATA
TACTTCCATTTTGTTTCGCGCTCGTTGTCATGTTTTTCTGCACTCCATAC
AGTAAGTACAAAAATTCGCCTCTTGTACGTTACCCTAGCCCCCCAACCCC
GGGCCAGCCGCCCCTCTGAGCCAGCCGAAAATCGCAGGATATCGTTCGAG
TCGCAACGTTGTACATAGAGAAGTGCAACCTCGATGCTATTTGACTTCGG
CATGCGCTTTCATGAGCACATGCACACAACCTCTAAACTACCATTTTCCA
ACACCTCTTTTTTTTTGTCCTGCTTTTGGCAGAGTAGGCAAATGTGATTG
GCCATCGAGGACTTCTATGACGGGAACACTGTTCCGTCCTCTCGAGCACG
CAGGGTCAATGTTCTAATACCTCAGGCACGTGAACATTAGTACCCATCAA
TTGGTACCCCCCGCCTCCTAAACGATGAGTACCCCCTTTCTCCCCCTGAA
TTTTGAGTCCCTCTTTTCTGCTCGACTCGGCTCCCGCTCCCTCCCACTGA
TGATGCGTTCTTAACACAGATCGATTGCACATTTGCGGGGGCGGGGCCCC
TTCCGTCTCTGCAGTTCGCTCAACAGGCGGTTCGCATGCTGATGGCGCGG
TATCCTTCTCGCCTGGGAAAGCTGTTCCTAGTCAACCCAGGCGTTGCTGT
GTATTTCCTGTGGCAAGCTATCTCCTTGCTGCTCGAGCCGGTGAGCTGGT
GTAACTCGATCTTATACTTGAATAAGAAGATACTATGTTTTGTGCACAGC
GGCCCTCTCCGATAATTGGCAGACTTGAGAATTCTTGGCGTTATATTGAA
CAGAAGCGACAATTATGAGACACATTTCACGATCGGTCCATTGAAGCGCA
TCACACGGCGGCTAAGTACCCCGCGGAAATACGTGGATAACGTATAAAAA
CTGTTTCGAGAACTGACTCCTCCTGACTTGCAACAGCAAACAATCAATAA
ACAGGTGAACTCGCAATTCCGGACATTTTTGTAGTTTACATGTGCATAGT
TATGTACCACTGTTTCACTGAATGGCGGTGTTGTTGCTGTGTATTGTTTG
AAAAATCTGTTTGAACTACCCGAAATAAACAACAGGTTACTCGCGAAAAG
ATAGTGGTGGTATCAGGGACACGAGAACAGCAGCGAGAGTTACTGCTGAA
TTATATATCCCCGGAGGATCTGCGGGCAGGACAATTGGGTTGCCCGGAGG
AGCCTCCCTTTAATGCCGAGGCATACTTGGCAGGCGGGGATGGCGAGGGG
ATGCCGCCCGACGGTGGACGGGATGCATGATTAAGTGGGAGAGGGGCAGT
GTTATTGAGTGTTACATGAAACGGCGGGCGTTGGTGTGTCAAACGACAGA
GGTCAAGATTAACAACGTGTGAAGGTTTCAAGTTCCGGTTCATACGCTGG
TCATCTGCCAGTTGTATCTGTTCCCTCTGTTCTGAACCGCCTCATCACTC
CCGGAAACAACGGACACATTGGCGGTGTGGGGTTTTCACTGGCGTGCCAA
GGAGCAGAGAGGTTTATTTTGGTGAAGCAGCAGCGGCAGGAAACGTCACA
TTAGAGGATAGGGGAGCGGGGGGGCTGGCGACTGCGGCGCGATGGATATG
ATGTCGATTTTGTCCGTGTGCTAGACCTATGTGCGAATCGTGCTCTGTGG
TAGCGCGGGGGTTTGTGGCCACTGTACTACCACATGCAAGATGTCGCTTC
TCATGTCCTCCGAAAACCTTGCGCACGTCCTGCCGCTCTCCGTTTCCTGC
TGGGATTTTTATGAGTCTGACAGCAACGTCACAATAACGCGGGCTATTAT
TGTACAGTCTTGTTATTATGATTACGTTTTTTTTTTTGCGTTTGGCGAAA
ATTACATTTTGTGTGTTTCATGATGTTTGTGGTACTATACACCGGCAGTA
ATAATGTCATCTGCGCCCGCGCGAGCACGTGTTTCTGTGTGATTATGTGA
AATGTGTGATGGTGTTGTGTCTATGCGGCTTTTGGGAGTTGGCGTTCGCT
CGCATTTCTGACAAGTGCTCGAGTGAACCGCATATTCCTTCTCTTTCGTC
TCTGATGGCTGGGAACTTTTGTCGTGAACTCACGGCACTAGCCGAAGCCA
CCTACAGTACAGGAGTAGTCAGTATGCATGGATTATGATATTTTAGTATA
CGTGCTCCATCAGAGACCAGACGTTTTGGGAGGAATCCGTATTTTTTTTG
TAAGTTTTTGGGTTTACCCACTATTCGAGTGTTTGAGTGCCCAGTATTAA
TAGGTCATATTGGTTGGCGTCGAATGTGCAGTTAGTAGCGCTGTCCGTCG
CACTGCATATTATTCCAGTTGTAGCTGAAGGTCGTGTGCTGTTAAATAAA
TACGAATAAAGTAACACCGTTCAGTTACAGTCGTCCTCGCTTCAAGGACA
CTATGTATGTGCGCGGGGGAGTGTCCTCAAGTGAATGGGGAAGATGACTC
GTTATCCCCGGGTCTTTGGTAGGCGTTTTGTGGCGTAATCAACGCGTCTT
AGCAAGAGCGATTTGCTCAAGGAATGTAAAGGAAAAAAGAAAAAACACGT
TTGCGGCCTTGTTTTGCTACATCATACTATTGAGAATATACTAATGTCAG
CGTTACGAGTGACGACGGTAGCACTATTTTTTGGTGGAAGGATAACGTAG
GACACGCAGCGCGGGGCGTTATTGCACACAATACGCGCCAGTAGACACCC
AAGTACAAGAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9556:1140..6003-

>mRNA_H-paniculata_contig9556.17275.1 ID=mRNA_H-paniculata_contig9556.17275.1|Name=mRNA_H-paniculata_contig9556.17275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig9556:1140..6003- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGGTCGGTGCAGCAGACGACAACACACAACCATGGCAAGGATGA
TGAAAATGACGCAGCCTGGCAATGGGAGTCCCCCGATCCTCCGGCCGAGC
TCACTGAAGAGCAAAATCAGATGCTCGACGTCGTGATAGAAGAAGTGCGG
AGGTCACCCCTCAGCTCCGCAGTCACACACGGAGGCAGGTCTGCTATATG
GCGCTATCTGAACGCCGCTAGATGGGGCACCGAATTATCGGGAAAGCGCG
TGTCGAGCTACTTTCTGGAAACGTTGGAGTGGCGGAAACTGCTGGCGATA
GATCGTGTGCTCGAGGATAAAGAGCATGCAGCGAGCTTGCTGAAAGAAGC
GGCGACGGGCAAGCTGTTCGTCAGGGGCACGTGTCTTTTCCATCGGCCTC
TGATCTGGTTGCACCTTGGCCGGGAGAATAACGCGCTGGATCCTGTCTCG
AATGTTCGATTATTGGTGTACACTGTGATGAGTGGGTCGGTGCAGCAGAC
GACAACACACAACCATGGCAAGGATGATGAAAATGACGCAGCCTGGCAAT
GGGAGTCCCCCGATCCTCCGGCCGAGCTCACTGAAGAGCAAAATCAGATG
CTCGACGTCGTGATAGAAGAAGTGCGGAGGTCACCCCTCAGCTCCGCAGT
CACACACGGAGGCAGGTCTGCTATATGGCGCTATCTGAACGCCGCTAGAT
GGGGCACCGAATTATCGGGAAAGCGCGTGTCGAGCTACTTTCTGGAAACG
TTGGAGTGGCGGAAACTGCTGGCGATAGATCGTGTGCTCGAGGATAAAGA
GCATGCAGCGAGCTTGCTGAAAGAAGCGGCGACGGGCAAGCTGTTCGTCA
GGGGCACGTGTCTTTTCCATCGGCCTCTGATCTGGTTGCACCTTGGCCGG
GAGAATAACGCGCTGGATCCTGTCTCGAATGTTCGATTATTGGTGTACAC
TGTGGAACGAGCTATCGCGAGCATGGCGCCCGAAGCGTTAGGAGCGAAAG
CCAAGGGCCAGTTCTGTGTTGTGGAACGAGCTATCGCGAGCATGGCGCCC
GAAGCGTTAGGAGCGAAAGCCAAGGGCCAGTTCTGTGTTGTGATCGATTG
CACATTTGCGGGGGCGGGGCCCCTTCCGTCTCTGCAGTTCGCTCAACAGG
CGGTTCGCATGCTGATGGCGCGGTATCCTTCTCGCCTGGGAAAGCTGTTC
CTAGTCAACCCAGGCGTTGCTGTGTATTTCCTGTGGCAAGCTATCTCCTT
GCTGCTCGAGCCGATCGATTGCACATTTGCGGGGGCGGGGCCCCTTCCGT
CTCTGCAGTTCGCTCAACAGGCGGTTCGCATGCTGATGGCGCGGTATCCT
TCTCGCCTGGGAAAGCTGTTCCTAGTCAACCCAGGCGTTGCTGTGTATTT
CCTGTGGCAAGCTATCTCCTTGCTGCTCGAGCCGGTTACTCGCGAAAAGA
TAGTGGTGGTATCAGGGACACGAGAACAGCAGCGAGAGTTACTGCTGAAT
TATATATCCCCGGAGGATCTGCGGGCAGGACAATTGGGTTGCCCGGAGGA
GCCTCCCTTTAATGCCGAGGCATACTTGGCAGGCGGGGATGGCGAGGGGA
TGCCGCCCGACGGTGGACGGGATGCATGAGTTACTCGCGAAAAGATAGTG
GTGGTATCAGGGACACGAGAACAGCAGCGAGAGTTACTGCTGAATTATAT
ATCCCCGGAGGATCTGCGGGCAGGACAATTGGGTTGCCCGGAGGAGCCTC
CCTTTAATGCCGAGGCATACTTGGCAGGCGGGGATGGCGAGGGGATGCCG
CCCGACGGTGGACGGGATGCATGA
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