mRNA_H-paniculata_contig9495.17232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9495.17232.1
Unique NamemRNA_H-paniculata_contig9495.17232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A6H5L438_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L438_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.470e-55
Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAGAIQAEIDNATATIGGSSLLF 382
            LYDMVYVERLPEEQQMTSGLFLP K NP MHVCKVVS+G+ REGESGH++ N AV  GDLV+VKDPYGIGPRDD    ++FSFVRY+SICAVIPNS+ FEDAAR AG +QAE+D A     GS L F
Sbjct:   60 LYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSQDFEDAAREAGKLQAEMDKAA----GSGLAF 182          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: D7FXF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF3_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.510e-55
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAGAIQAEIDNATATIGGSSLLF 382
            LYDMVYVERLPEEQQMTSGLFLP K NP MHVCKVVS+G+ REGESG+++ N AV  GDLV+VKDPYGIGPRDD    ++FSFVRY+SICAVIPNSE FE+AAR AG +QAEID A     GS L+F
Sbjct:   17 LYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSEDFENAAREAGKLQAEIDKAA----GSGLVF 139          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A835ZNU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.040e-47
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAG 322
            LYDMVYVERLPE QQMTSGLFLP KENP MHVCK+VS+G  REGESG L  NA +  GDLVYVKDP+GIGP+DD     +FSFVRY +ICAVIPNS+A+E +AR+AG
Sbjct:   15 LYDMVYVERLPEAQQMTSGLFLPGKENPRMHVCKIVSLGQGREGESGTLVENAGLKPGDLVYVKDPWGIGPKDDEFSNHKFSFVRYQNICAVIPNSDAYEASARAAG 121          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A6T5R4I0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5R4I0_HETAK)

HSP 1 Score: 113 bits (282), Expect = 8.390e-28
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFE 301
            LY MVYVERLPE  Q T GLFLP +ENP  H+C+VVS+G   EGESG ++ +  +  GD VYVK+P+GIG +D+   RR+FSF+RY+ +C       A E
Sbjct:   52 LYGMVYVERLPEPVQTTGGLFLPGQENPRRHICRVVSVGPGVEGESGAVATSRGLAPGDYVYVKNPWGIGAKDEQFGRRKFSFLRYNEVCGTFDAGAAME 151          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1UEZ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEZ3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.080e-22
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICA 274
            LYDM+YVERL E+ Q   G+FLPT    N  +H+ +V+S+G  REGE+G  ++N +   GD+V++++ +GIGPRD+  R R+FSFVR   +CA
Sbjct:   94 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCA 186          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1XW59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW59_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.540e-22
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICA 274
            LYDM+YVERL E+ Q   G+FLPT    N  +H+ +V+S+G  REGE+G  ++N +   GD+V++++ +GIGPRD+  R R+FSFVR   +CA
Sbjct:  114 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCA 206          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7R9U985_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U985_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.070e-21
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVI 280
            LYDMVYVERL E+QQ   G+FLP     N  +H+ +VVS+G  REGE+G  ++N     GD+V++++ +GIGPRD+    R+FSFVR   +CA I
Sbjct:   76 LYDMVYVERLGEDQQSAGGVFLPKVSGGNQDLHMARVVSVGDGREGENGCKTMNGNYKQGDIVFLRNAWGIGPRDEEFFGRKFSFVREQDVCAHI 170          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S2NV19_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NV19_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-15
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    5 YDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDG-GRRRRFSFVRYSSICAVIPNS 289
            YDMV VER+  + + +SGL++P +E P +H+ +V+SMG  RE E+G ++      +GD+V +KDP+GIGP+D+     ++ S+    +I AV+  S
Sbjct:   71 YDMVLVERIQGKPKTSSGLYVPEQELPRLHLARVLSMGPGREEENGMITAMPNFKVGDVVVLKDPWGIGPKDEETSDGKKLSYAMAKNIAAVLDGS 166          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A4D9CVR2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVR2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.300e-14
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 YDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVI 280
            +  + VERL    +   GLFLP+ +   +H+ +VVS+G    GESG L+    +  GD+ YVK P+GIGPRD+    R+FSF+R   + + I
Sbjct:   76 WQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRVVSIGSGLVGESGMLTTIENLGRGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRI 167          
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1UF34_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UF34_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.440e-14
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPR 217
            LYDM+YVERL E+ Q   G+FLPT    N  +H+ +V+S+G  REGE+G  ++N +   GD+V++++ +GIGPR
Sbjct:   94 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L438_9PHAE1.470e-5573.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF3_ECTSI1.510e-5573.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNU0_9STRA1.040e-4772.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T5R4I0_HETAK8.390e-2853.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1UEZ3_9STRA4.080e-2248.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XW59_9STRA6.540e-2248.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U985_9STRA2.070e-2149.47Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2NV19_9STRA1.690e-1539.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9CVR2_9STRA3.300e-1440.22Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S1UF34_9STRA3.440e-1447.30Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9495contigH-paniculata_contig9495:3062..4417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D7FXF3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chaperonin 10 Kd subunit
EggNOG OGs2E43F@1,2SB1V@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size652
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9495.17232.1prot_H-paniculata_contig9495.17232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9495 3072..4150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3104382-UTR-H-paniculata_contig9495:3061..30711622931180.3104382-UTR-H-paniculata_contig9495:3061..3071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9495 3062..3071 +
1691481626.6408288-UTR-H-paniculata_contig9495:3061..30711691481626.6408288-UTR-H-paniculata_contig9495:3061..3071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9495 3062..3071 +
1622931180.3644006-UTR-H-paniculata_contig9495:4150..44171622931180.3644006-UTR-H-paniculata_contig9495:4150..4417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9495 4151..4417 +
1691481626.674445-UTR-H-paniculata_contig9495:4150..44171691481626.674445-UTR-H-paniculata_contig9495:4150..4417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9495 4151..4417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.325697-CDS-H-paniculata_contig9495:3071..31641622931180.325697-CDS-H-paniculata_contig9495:3071..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3072..3164 +
1691481626.6505978-CDS-H-paniculata_contig9495:3071..31641691481626.6505978-CDS-H-paniculata_contig9495:3071..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3072..3164 +
1622931180.3366165-CDS-H-paniculata_contig9495:3561..36671622931180.3366165-CDS-H-paniculata_contig9495:3561..3667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3562..3667 +
1691481626.6585357-CDS-H-paniculata_contig9495:3561..36671691481626.6585357-CDS-H-paniculata_contig9495:3561..3667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3562..3667 +
1622931180.3508778-CDS-H-paniculata_contig9495:3974..41501622931180.3508778-CDS-H-paniculata_contig9495:3974..4150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3975..4150 +
1691481626.6665232-CDS-H-paniculata_contig9495:3974..41501691481626.6665232-CDS-H-paniculata_contig9495:3974..4150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9495 3975..4150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9495.17232.1

>prot_H-paniculata_contig9495.17232.1 ID=prot_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNA
AVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAA
RSAGAIQAEIDNATATIGGSSLLF*
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mRNA from alignment at H-paniculata_contig9495:3062..4417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9495.17232.1 ID=mRNA_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig9495:3062..4417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTACGACATGGTGTACGTGGAACGATTGCCCGAAGAGCAGCAGATGA CTTCTGGGTTATTTTTGCCCACGAAGGAGAACCCCGGGATGCACGTCTGC AAGGTACGTACCATTATGTAGAGCCCTATTGGTAATGTAGCCACGGCTAC TCCCTTACAGTCATACTCCGTATGTTGTCCTCGCTTCCATTGCTTTATTC AAAACAAAACCGTGACACACACAACAGCCCACCGCTCGCATCTAAGCAAA ATCTTGATGAAAATTTGCTAATAAACTACTTGCGTACAGAATTGGAAGAA TGTTCCAGAATGACCATCATCGCCGCGGTGAAGTTTTATCTCGATAGAAA AGCATGTTTTCGAGAGAGGTACCAATCCTTTTTGTGTTGCGAATTCTGTG CCCGCCTTCTCTCGACTTGTTTCCAGTCCTCTTAGCCTTGTCTTGTTTTT AGAATGTATGGTCCTTTTCACTTGTTTGACACATGTTTGCCTGTTTGTAG GTGGTGTCGATGGGGCATGAGCGAGAGGGAGAGAGCGGACACTTGAGCCT GAATGCTGCTGTCAACATTGGAGACCTCGTGTACGTAAAGGACCCTTACG GAATTGGTGAGTCATCGTCAATCGTCATGTTTTTGTCGCTTGCATGTGTA CCCATCACCCGCCACTCCACTCCTGTCTGGGGTGACCACTTGGACTTGCT CGAAACACGCTCTCTATTGTGAGACTCATGTTTGCAGTAACAGAGCAAGT GCTCCGCGCGCGCCCAAAGTATGATGCCCCAAGTTGGCCATATGCACACA CAGCTAACGATCTACTCGGACTATTTGCATAACACTAAATTGCTCTTGTT AATCAAGAATTTTTACGTGTGTCCTTTCACTGAAAATGTGAAAACATTGC TTGCTGGAAACAGGCCCCAGGGACGACGGGGGACGACGTCGTCGTTTTTC GTTCGTGCGGTATTCCAGCATCTGTGCGGTCATCCCAAACTCGGAGGCTT TCGAGGATGCGGCGCGAAGCGCTGGCGCGATTCAGGCAGAGATTGACAAC GCTACTGCTACGATTGGCGGGAGCAGTCTTTTGTTCTAATCTATTGTTTG TTCTATTCAATGCCGGGATGTTGCTGATTTGTTTGTTCATGGGGTATCTT GCTTTCATCCATAGCATGCTTTTCGGCGAATGAAGGTCGACTTTGCGTTC TGCACAAGTTCCCTGGGTCGTTGGTTCTGTTCATAGTTGATAACATTGGA ACTCCACGTGCGGGAGGTACTGCTTGTCATAAATGATTAGAGTAGAGTCT ATGTTTTGGGTTGTGTAGAGCACTGAGGATAACCCGAAGCACAAAGTACG CCTTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig9495:3062..4417+

>mRNA_H-paniculata_contig9495.17232.1 ID=mRNA_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig9495:3062..4417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTACGTGGAACGATTGCCCGAAGAGCAGCAGATGACTTCTGGGTT
ATTTTTGCCCACGAAGGAGAACCCCGGGATGCACGTCTGCAAGATGGTGT
ACGTGGAACGATTGCCCGAAGAGCAGCAGATGACTTCTGGGTTATTTTTG
CCCACGAAGGAGAACCCCGGGATGCACGTCTGCAAGGTGGTGTCGATGGG
GCATGAGCGAGAGGGAGAGAGCGGACACTTGAGCCTGAATGCTGCTGTCA
ACATTGGAGACCTCGTGTACGTAAAGGACCCTTACGGAATTGGTGGTGTC
GATGGGGCATGAGCGAGAGGGAGAGAGCGGACACTTGAGCCTGAATGCTG
CTGTCAACATTGGAGACCTCGTGTACGTAAAGGACCCTTACGGAATTGGC
CCCAGGGACGACGGGGGACGACGTCGTCGTTTTTCGTTCGTGCGGTATTC
CAGCATCTGTGCGGTCATCCCAAACTCGGAGGCTTTCGAGGATGCGGCGC
GAAGCGCTGGCGCGATTCAGGCAGAGATTGACAACGCTACTGCTACGATT
GGCGGGAGCAGTCTTTTGTTCTAAGCCCCAGGGACGACGGGGGACGACGT
CGTCGTTTTTCGTTCGTGCGGTATTCCAGCATCTGTGCGGTCATCCCAAA
CTCGGAGGCTTTCGAGGATGCGGCGCGAAGCGCTGGCGCGATTCAGGCAG
AGATTGACAACGCTACTGCTACGATTGGCGGGAGCAGTCTTTTGTTCTAA
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