prot_H-paniculata_contig9462.17211.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9462.17211.1
Unique Nameprot_H-paniculata_contig9462.17211.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length542
Homology
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BLAST of mRNA_H-paniculata_contig9462.17211.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.290e-50
Identity = 230/439 (52.39%), Postives = 255/439 (58.09%), Query Frame = 0 
Query:    1 QVLNELELAGQAMLVKVGKKEQPALEAFLSPKDEEAGKRFETLVDNVKKKVNSVLVRAGERGGAEGDASGEGSSSKRSKTAKKGVKANGNNTHGEDDEDGDGKSGAGXXXGKSPASVGNSSXKXXXXXXXXRGGR--------------------------TRKDWVRFDGAAMLLSSAGWSDDEDEEKEELITSEIEKFRQKQAERDKKLEEERRQELQRKIKEAARRERAXXXXNKRIQQAQRDREAREMVAMAAMKNKETSREDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRDRSPDRRXXXXXXXXXXXXKRSRSPGDXXXXXXXXXXXXXXXXEDNSKKGDSSGKEKE--------------LDDKRAARAKLAEEETRKRRLAVLSALEHAGDGEDGD 399
            Q+LN+LELAGQ +LVKVGKKEQP+LEAFLSPKDEE  K+ + L+D VK K++SVLVR GER      A G+GSS        KG  AN          DG          GKSP SVG SS            G+                          +RKDWVR+DGAAMLLSSAGWS+DEDEEKEELITSEIEKFRQKQAERDKKLE+ERRQELQRKIK        XXXX         DREAREMVAMAAMK++     DD+                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GRR+RS DR   XXXXXXXXXX       D                      G SSG +K+              ++ KRAARAKLAEEETRKRRLAVLSALE+AG+  DGD
Sbjct:  195 QLLNDLELAGQPILVKVGKKEQPSLEAFLSPKDEEYAKKHQVLLDTVKAKIDSVLVRYGER-----SAPGKGSS--------KGGNAN---------SDG----------GKSPVSVGASSPSRSGRGSSKXXGKGDGGKGXXXXXYQXXXXXXXXXXXXKSRKDWVRYDGAAMLLSSAGWSEDEDEEKEELITSEIEKFRQKQAERDKKLEDERRQELQRKIKXXXXXXXXXXXXXXXXXXXXXDREAREMVAMAAMKSR-----DDKDTAADQKKGGDEDGKKPSSPNGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRRERSSDRDGGXXXXXXXXXXXXDSRRDDHRDSDRGG--------------GRSSGGDKDXXXXXXXXXXXXXXMEAKRAARAKLAEEETRKRRLAVLSALENAGN--DGD 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9462.17211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJT5_ECTSI3.290e-5052.39Splicing factor PWI domain-containing protein / RN... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 425..446
NoneNo IPR availableCOILSCoilCoilcoord: 232..281
NoneNo IPR availableCOILSCoilCoilcoord: 171..227
NoneNo IPR availableCOILSCoilCoilcoord: 359..379

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9462contigH-paniculata_contig9462:278..9365 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9462.17211.1mRNA_H-paniculata_contig9462.17211.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9462 278..9365 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9462.17211.1 ID=prot_H-paniculata_contig9462.17211.1|Name=mRNA_H-paniculata_contig9462.17211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=542bp
QVLNELELAGQAMLVKVGKKEQPALEAFLSPKDEEAGKRFETLVDNVKKK
VNSVLVRAGERGGAEGDASGEGSSSKRSKTAKKGVKANGNNTHGEDDEDG
DGKSGAGGTGGKSPASVGNSSPKRGGDDGSQRGGRTRKDWVRFDGAAMLL
SSAGWSDDEDEEKEELITSEIEKFRQKQAERDKKLEEERRQELQRKIKEA
ARRERAKEEENKRIQQAQRDREAREMVAMAAMKNKETSREDDEKQKEEDE
KDNEEEEDKERERQRERQRETEEERERDRDRDRRKARSRSRSRSRSRERK
RGRRDRSPDRRRDRSPDRRRDRSKRSRSPGDRSKRSRSPGDRSKRDREDN
SKKGDSSGKEKELDDKRAARAKLAEEETRKRRLAVLSALEHAGDGEDGDG
GDESAGGADGKSNGNGATAVTPEEIAEAERQRKEELKRRKAVLASLGEDF
LDSDGDDDDDDDDDDDDDDDDEGRGEGEKAMGEDGLSAAAAEVAAAAAAA
ATETGESAAATADGAAAKPVRAEKKGKARDKELVGSIPKVI*
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