mRNA_H-paniculata_contig9445.17196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9445.17196.1
Unique NamemRNA_H-paniculata_contig9445.17196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: A0A6H5JEL0_9PHAE (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL0_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.300e-58
Identity = 99/146 (67.81%), Postives = 112/146 (76.71%), Query Frame = 1 
Query:  178 QVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGCYRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            QVISLGAGKDSLFFRL + G AP+GGYFEVDF AVSTWK  L+  TP LSALA           Y+LV+ DLRD   LED L  AGV+ +APT+FLAECVLVYME  +S ALL+WC+S FPDSLFAAYEMT P+DAFG MM+QNIQ
Sbjct:   32 QVISLGAGKDSLFFRLMDRGTAPSGGYFEVDFPAVSTWKGGLVAKTPILSALANDL--------YKLVAADLRDITALEDALIMAGVDLAAPTMFLAECVLVYMEPADSSALLQWCASKFPDSLFAAYEMTSPHDAFGKMMKQNIQ 169
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: D8LL47_ECTSI (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL47_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.020e-43
Identity = 98/191 (51.31%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:    1 PPTHPAGNFARVSCIEKFVLEFLASAVASSPSSSSPSPH-VSGQSNYHTTYLVSPR----------AHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGCYRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFP 540
            PP    GNFARVSC+EK VLEF    + +SPS  S  PH V G  + H ++    +          A   QVISLGAGKDSLFFRL + G A +GGYFEVDF AVS WK  L+  TP LSALA           Y+LV+ DLRD   LED L  AGV+ +APT+FLAECVLVYME  +S ALL+      P
Sbjct:   63 PPIINRGNFARVSCMEKLVLEF----IGTSPSHPSSVPHHVRGDGDEHPSHKTDCKESQSSIEEHLARKPQVISLGAGKDSLFFRLMDRGTAASGGYFEVDFPAVSRWKGGLVAKTPILSALANDL--------YKLVAADLRDITALEDALIIAGVDLAAPTIFLAECVLVYMEPADSGALLQRMGCLLP 241
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: H2Z4V0_CIOSA (Leucine carboxyl methyltransferase 1 n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z4V0_CIOSA)

HSP 1 Score: 126 bits (316), Expect = 1.000e-31
Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1 
Query:  178 QVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGY-----KHAPFPGCYRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            Q++SLGAG D+ ++RL EAG  P G YFEVDF  V T K R I T PAL +    +     K     G YRLVS DLRD   LEDKL +AG++F  PT+FLAECVL+YM   +S  L+ W +  F D +F  YE    +D+F  +M  N++
Sbjct:   76 QIVSLGAGLDTTYWRLHEAGLVPHG-YFEVDFIDVVTRKIRCIGTKPALRSCLSDFETQSDKSCLHCGAYRLVSADLRDILKLEDKLISAGIDFRLPTLFLAECVLIYMAPDKSSNLINWITDKFNDCVFINYEQINMDDSFAKVMINNLK 225
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: A0A7S0E1B4_9CRYP (Leucine carboxyl methyltransferase 1 n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E1B4_9CRYP)

HSP 1 Score: 125 bits (313), Expect = 8.950e-31
Identity = 81/220 (36.82%), Postives = 111/220 (50.45%), Query Frame = 1 
Query:    1 PPTHPAGNFARVSCIEKFVLEFLASAVASSPSSSSPSPHVSGQSNYHTTYLVSPRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC----------------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNI 612
            PP    G++ARV+ + K + +FL S    +   SS S   SG  +              Q++ LG+G DS FF LKE  + P GGYFEVDFE V  +K   I  +  L  + G   +                      Y LVS D+R+   LE   R AG++FSAPT+FL+ECVL+YM+  E   ++ W ++ FP S+F  YE   P D FG +M QNI
Sbjct:   74 PPLINRGHYARVAAVRKVIFQFLQS--CGNNDISSESEQGSGNQSLRE-----------QIVILGSGLDSTFFYLKEINKQPRGGYFEVDFEDVVRYKKDRILRSDVLKGMLGLIVNKGEQQDDDNRESDNEINLRTKEYHLVSCDIRNCQKLESVFREAGIDFSAPTLFLSECVLIYMKPDEGTKIIEWTANLFPCSIFFTYEQINPYDPFGKVMSQNI 280
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: A0A6F9DJ03_9ASCI (Leucine carboxyl methyltransferase 1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DJ03_9ASCI)

HSP 1 Score: 123 bits (309), Expect = 1.730e-30
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:  154 VSPRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC----YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            VS   ++ Q++S GAG D+ F+RL  AG  PT  Y EVDF+ +   K R I     L    G    +         Y LV+ DLRDTG L+DKL+++ V+FS PT+FL ECVLVY+   +S A+L+WC+ +F D++F  YE  + +D FG +M QN++
Sbjct:   92 VSLTNNLCQIVSFGAGLDTTFWRLHSAGLLPTR-YIEVDFQEIVYRKIRAIRNKSPLKGCLGSITSSDQSSLHCEKYHLVTCDLRDTGSLKDKLKSSEVDFSVPTLFLTECVLVYIPPEDSMAILKWCAESFTDAVFVNYEQVRMHDNFGQVMIQNLK 248
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: D2GW58_AILME (tRNA wybutosine-synthesizing protein 4 (Fragment) n=10 Tax=Caniformia TaxID=379584 RepID=D2GW58_AILME)

HSP 1 Score: 127 bits (318), Expect = 2.690e-30
Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:  178 QVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC-------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            Q++SLGAG DSL+FRLK AG       +EVDF  V+  KA  I  TP L AL G ++              YRL+  DLR    L++ L AAG+N +APT+ LAE VL Y+E +++ AL+ W +  FPD+LF  YE  +P+DAFG +M+Q+ Q
Sbjct:   84 QILSLGAGSDSLYFRLKTAGHLAGTAVWEVDFPDVARRKAERILDTPELCALTGPFQSRDPTSALCFESVDYRLLGLDLRQLARLDEALAAAGLNAAAPTLLLAEAVLTYLEPNDAAALIAWAARRFPDALFVIYEQMRPHDAFGQVMQQHFQ 236
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: A0A1S3AEC7_ERIEU (tRNA wybutosine-synthesizing protein 4 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3AEC7_ERIEU)

HSP 1 Score: 125 bits (315), Expect = 6.830e-30
Identity = 70/159 (44.03%), Postives = 96/159 (60.38%), Query Frame = 1 
Query:  160 PRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC-------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            P A   Q++SLGAG DSL+FRLK AGR      +EVDF  V+  KA  I  +P L ALAG  + A            YR++  DLR    LE  L AAG++ +APT+ LAE VL Y+E  ++ AL+ W +  FPD+LF  YE  +P+DAFG +M+++ +
Sbjct:   78 PGAPRAQILSLGAGSDSLYFRLKAAGRLAGAALWEVDFPDVARCKAERIRKSPELRALAGPERSADPASALYFQSPDYRILGVDLRRLQPLERTLSAAGLDAAAPTLLLAEAVLTYLEPEDAAALVAWAAQRFPDALFVVYEQMRPHDAFGQVMQRHFR 236
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: G1PCD8_MYOLU (tRNA wybutosine-synthesizing protein 4 n=5 Tax=Vespertilionidae TaxID=9431 RepID=G1PCD8_MYOLU)

HSP 1 Score: 125 bits (314), Expect = 9.380e-30
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:  160 PRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC-------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            PRA   Q++SLGAG DSL+FRLK AGR      +EVDF  V+  KA  I  TP L A+ G ++              YR++  DLR    L+  L AAG+  +APT+ LAE VL Y+E   + AL+ W +  FPD+LF  YE  +P+D FG  M+Q+ Q
Sbjct:   78 PRAPRAQILSLGAGSDSLYFRLKAAGRLSGAAVWEVDFPDVARRKAERIRDTPELCAITGPFRSGDPASALRFESSDYRILGLDLRQLERLDRALAAAGLEEAAPTLLLAEAVLTYLEPDNAAALIAWAAQRFPDALFVIYEQMRPHDPFGQFMQQHFQ 236
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: A0A6P3EGM6_OCTDE (tRNA wybutosine-synthesizing protein 4 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3EGM6_OCTDE)

HSP 1 Score: 125 bits (314), Expect = 9.380e-30
Identity = 69/159 (43.40%), Postives = 93/159 (58.49%), Query Frame = 1 
Query:  160 PRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC-------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            P A   Q++SLGAG DSL+FRLK +G     G +EVDF  V+  KA  I  TP L AL G ++              YR++  DLR    L++ L AAG+N +APT+ LAE VL Y++   + AL+ W +  FP++LF  YE  KP DAFG +M Q+ Q
Sbjct:   78 PHAPSAQILSLGAGSDSLYFRLKASGLLTGAGVWEVDFLDVAKRKAERITETPELCALIGPFRRGSPESALCFESLDYRILGLDLRQLRQLDEALDAAGLNVAAPTLLLAEAVLTYLQPSSAAALIAWAAQRFPNALFVMYEQMKPQDAFGQVMLQHFQ 236
[Close]
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Match: UPI001E69AE31 (tRNA wybutosine-synthesizing protein 4 n=1 Tax=Meles meles TaxID=9662 RepID=UPI001E69AE31)

HSP 1 Score: 125 bits (314), Expect = 9.380e-30
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:  178 QVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKARLIETTPALSALAGGYKHAPFPGC-------YRLVSGDLRDTGVLEDKLRAAGVNFSAPTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMMRQNIQ 615
            Q++SLGAG DSL+FRLK AG       +EVDF  V+  KA  I+ TP L AL G ++              YRL+  DLR    L+  L AAG+N  APT+ LAE VL Y+E  ++ AL+ W +  FPD++F  YE  +P+DAFG +M+Q+ +
Sbjct:   84 QILSLGAGSDSLYFRLKSAGHLAGAAVWEVDFPDVARRKAERIQDTPELCALTGPFQTRDPASALCFESVDYRLLGVDLRQLSRLDQALAAAGLNAVAPTLLLAEVVLTYLEPKDAAALIAWAAQRFPDAIFVTYEQMRPHDAFGQVMQQHFR 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9445.17196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL0_9PHAE5.300e-5867.81Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
D8LL47_ECTSI2.020e-4351.31Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
H2Z4V0_CIOSA1.000e-3147.02Leucine carboxyl methyltransferase 1 n=1 Tax=Ciona... [more]
A0A7S0E1B4_9CRYP8.950e-3136.82Leucine carboxyl methyltransferase 1 n=1 Tax=Hanus... [more]
A0A6F9DJ03_9ASCI1.730e-3042.41Leucine carboxyl methyltransferase 1 n=1 Tax=Phall... [more]
D2GW58_AILME2.690e-3045.10tRNA wybutosine-synthesizing protein 4 (Fragment) ... [more]
A0A1S3AEC7_ERIEU6.830e-3044.03tRNA wybutosine-synthesizing protein 4 n=1 Tax=Eri... [more]
G1PCD8_MYOLU9.380e-3043.40tRNA wybutosine-synthesizing protein 4 n=5 Tax=Ves... [more]
A0A6P3EGM6_OCTDE9.380e-3043.40tRNA wybutosine-synthesizing protein 4 n=1 Tax=Oct... [more]
UPI001E69AE319.380e-3043.79tRNA wybutosine-synthesizing protein 4 n=1 Tax=Mel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9445contigH-paniculata_contig9445:2147..9399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue5.9e-37
Seed eggNOG ortholog2880.D8LL47
Preferred nameLCMT1
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K01358,ko:K09272,ko:K15451,ko:K18066,ko:K18203
KEGG ReactionR10586,R10587
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007346,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009966,GO:0009968,GO:0009987,GO:0010340,GO:0010467,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010965,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0018423,GO:0019538,GO:0022402,GO:0023051,GO:0023057,GO:0030071,GO:0030488,GO:0031333,GO:0031590,GO:0031591,GO:0031974,GO:0031981,GO:0032259,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0043687,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051726,GO:0051783,GO:0051983,GO:0051998,GO:0065007,GO:0070013,GO:0071704,GO:0090231,GO:0090266,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901976,GO:1901987,GO:1901990,GO:1902099,GO:1903047,GO:1903504,GO:1905818
EggNOG free text desc.protein C-terminal leucine carboxyl O-methyltransferase activity
EggNOG OGsKOG2918@1,KOG2918@2759
EC1.14.11.42,2.1.1.233,2.1.1.290,2.3.1.231,3.4.21.92
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03000,ko03016
Exons4
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9445.17196.1prot_H-paniculata_contig9445.17196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9445 2147..9399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.4915018-CDS-H-paniculata_contig9445:2146..22421622931174.4915018-CDS-H-paniculata_contig9445:2146..2242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 2147..2242 -
1691481623.9903932-CDS-H-paniculata_contig9445:2146..22421691481623.9903932-CDS-H-paniculata_contig9445:2146..2242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 2147..2242 -
1622931174.5146716-CDS-H-paniculata_contig9445:3199..33811622931174.5146716-CDS-H-paniculata_contig9445:3199..3381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 3200..3381 -
1691481624.0073886-CDS-H-paniculata_contig9445:3199..33811691481624.0073886-CDS-H-paniculata_contig9445:3199..3381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 3200..3381 -
1622931174.534806-CDS-H-paniculata_contig9445:6300..65091622931174.534806-CDS-H-paniculata_contig9445:6300..6509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 6301..6509 -
1691481624.0165422-CDS-H-paniculata_contig9445:6300..65091691481624.0165422-CDS-H-paniculata_contig9445:6300..6509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 6301..6509 -
1622931174.549629-CDS-H-paniculata_contig9445:9271..93991622931174.549629-CDS-H-paniculata_contig9445:9271..9399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 9272..9399 -
1691481624.0259433-CDS-H-paniculata_contig9445:9271..93991691481624.0259433-CDS-H-paniculata_contig9445:9271..9399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9445 9272..9399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9445.17196.1

>prot_H-paniculata_contig9445.17196.1 ID=prot_H-paniculata_contig9445.17196.1|Name=mRNA_H-paniculata_contig9445.17196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
PPTHPAGNFARVSCIEKFVLEFLASAVASSPSSSSPSPHVSGQSNYHTTY
LVSPRAHVLQVISLGAGKDSLFFRLKEAGRAPTGGYFEVDFEAVSTWKAR
LIETTPALSALAGGYKHAPFPGCYRLVSGDLRDTGVLEDKLRAAGVNFSA
PTVFLAECVLVYMEDHESDALLRWCSSTFPDSLFAAYEMTKPNDAFGIMM
RQNIQ
back to top

mRNA from alignment at H-paniculata_contig9445:2147..9399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9445.17196.1 ID=mRNA_H-paniculata_contig9445.17196.1|Name=mRNA_H-paniculata_contig9445.17196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7253bp|location=Sequence derived from alignment at H-paniculata_contig9445:2147..9399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCACCCACCCCGCAGGAAACTTCGCTCGTGTATCGTGTATCGAGAA
GTTTGTACTCGAATTTCTTGCGTCAGCGGTGGCATCATCGCCATCGTCGT
CATCGCCATCGCCACACGTCAGCGGTCAGTTTTCCTCAGCGGGTGTCTTT
GGGGATATACAAAGGATACAGTTGGCAGACTATTTATCATTACAGTACGG
TCCCGATGAGAAGAAACTCTTATTTCGGATGAGGCTCAAAAAATTATTTT
GGCGGGCATCACGAGCAGTATTGTTTCTAATTTCTATATTGGAATTAGTC
TTTTGCCACGATCTGAGTCCCATTTCTTGAACTAGATTTCTTACGGTTTA
GCGAAGATTGACCCTCAAATTTTTACTGGATGATTTCTTGTGAGCGGGCC
CGCACTGCACTTCAAAAGGGGCATTAAAAACAAATAGGTTTATTATATGT
GATCTGTTTTCTTTATTCGTTCCAAGAAATGGTCTGCATGCAGCGACTCG
CCGCAGTTTTTTGTCTTCAATTCCTGAAGAAAAAACCCACAACGAACCTG
ATGCAAGATTGATTGTATACAGAAGAAGACGTTCGTCTACTGCCTTTTGT
GGGAATCCAATGAAATATACACCCCGTGAATAAAGAAACGCTTGGACGAC
TCGTTGTGGCTCGTGCTAGGGTTTTTGGGCGGCTCAAGTAAATCGCTCGC
TCGCTCTTTCTCTATAGATGTATATGGCTCAGGTGAACAATCCAGTCTCT
CTCTCTCTCTCTCTCTGTACATTTATAGAGATCTGGGCACTGGTTTTACC
AGAAAAAAACAAACCCACGTTTATCTGTTGTTTTTTTATCGGCTGTCTGG
GCAAATGGCTTTGACGGGTCCTGATATTCTTTCTCTATCATCGTTTTTAG
CGGGTCGATAGGGGGGGAGCTCGCTGAGCCTCTTTTTTCATGTTTGTTGA
GCCACTTTTGGGAGGGGCTTGACGTAATAATATCCTTCTGTCACCCTTGA
ATTGAACAGTACAGTCGTTCCGAATCAGTCGAGCATTGTGCGCCTACCTC
CAGGGATGCGTGAATGCACAATGCCATTGAATAGCTTTGAAACATTTCAT
AAAATAAAAAGAACAAAAACGTGCCGCTTTGCGAAACTGCCCTCCATCGG
AGAGATGGCTCGAACCCCTCCCCGTCGCCCCCCCAGTGTATTCGTTTTGA
GGAAAATAACCAAAGTAATCCGGCAACTTGAAGATGATGACCATATTTTT
TGGCACGGTCAACGTTATGTTTTTACGTGGCATAATTTGGTCTTTTGCTA
CTATGCTTTGACTGCTTTTTTTCCCTCCGTCGCTTTATGATGACTGTTGT
AGGATTTTTTTCCAAACCGTAATTCTTAATAGTGTAGACACTGTCTAGCT
GATGAAGTTATCCTTGGCAATTGACGCATGTAGTAGTGATGTCGACCCCC
CCCCTCCCCTCCCCTATTGGTCTAATTTTGTTGACAAGTGTACACTGAAA
CTTGGAGGCAGCTGCATATCCTCGACATGTGCGTAGTGGAGTAATTGTAT
AAGCGTTATAGCTAAGTTCTATTAACTGTACTCCCTGCCCCCCTCTCCTC
CTTTACCGTACCCTGACTCATCTCTGGTTCTTACCATTCGTCATCCTCGT
CATTCTCCTTGTGCTGTTGCTACTGTTGCTGCTACCCCAGCCGCACACGT
GAGCGATGGTGTCCATAAAGAAGCTACGTCTTGGTGCAATCCCGGAGGCG
GTGCTAATGATGACCTCCCTTGTTCCACGATGATGACGGATATGACAATG
ACGGCGACGACAGCATCGGGTGGTACTAGCAGGAAACGAAATCCGCCACA
GGTTGGTGCTTTTTAATATCTCCCCCCCCCCCCCCTCCCGGACGAACACG
AATATACTTGTACATGGGACATCGCGCCGAAATTAAAAAGTACTAGCGAA
GGTTTCAGAATGTGCGGGCACATGGAATAATTAAGTGTTGACCTCCTAGT
TTGTTCGTTTTTGCTATTATTAGAAGCAGTCCGTCAGTCGTAGATATATG
GTCTCTACGGATTGCATGGTACTATTAACGTGCTTACTCATGCCCAGCCT
TCCTGTAGGCCGATGCTTTCTAGTTGTCGTCTCGAATGTTCATGCTCCAA
GTGCTCTTATTCGACCGAGGGGTGATACTCGGCTAGCTGTTTGAACAGCG
GCGGCTTTGTGCTAACCCCGTAGTGATTATCACACGCCATATTTTGTCCT
GTTTGAGGCGGGGGATTATATGGATAACGACCGCACCCTTATTAGTTTGA
CTGAGCAGCTGATATTGTGCAAGACTTGGATTTTGAATATGCTGAGGATT
GATATGTGTCATTTTCCGTCACATTTTCTCCCTTCATGCTAGCTATTTGA
TGTATTTATTATTTTTAGTCAAAAGGATGATTCCAATTATGTGTATGTAC
CAAATAATTTGACCTGTCAATTAATGAGAACATTTTTCTCTTTTTTACCC
AAGGTATGAAAATTTACCAGTAACTAGAGAAGTAAATATATATATTAAAA
ATCAGGCTTTCCGTTTTTTAGATGAAATTATCACAACACATTGTGTATGT
ATAATATCACAGGTGAGATCTGTAAGGGCCGGCAGGGACTCTCTGTTCTT
CAGGCTGAAAGATGGCAACAAGTTGACGAACAAGACATATTCTACGCACA
CATGCGACCAATTTCCCACTAAATAAAAATCCTTACGGACCAAATTCGGC
GAGTTTCGGGTTGCCGAAGAAGTCCACTTTGGAAGAAAAAAAAAAATGAT
CTCTAAAAAAACGTCCCCTGTATGAGAAGATGTGAATTTCATTTTTTTTT
TCGGTCTATAGTTTTTTTCATCGAAATTATCATTTTTTAGATCAAATTAC
CACACAACATACCTTGTTTCCCCACGTGCGCATGTATTACAGGTAATATC
TCTCGGTGCTGGCAAGGACTCTCTGTTTTTCAGGTTGAAAGAGGCCGGAC
GCGCTCCCACCGGCGGCTACTTCGAAGTCGATTTCGAAGCCGTATCCACT
TGGAAAGCACGGCTAATTGAGACCACCCCAGCTCTGTCTGCCTTGGCAGG
TAAGAAGTTTAGTGGAGAATGACGACAGTTGAAGAGAACACCGTACACGG
TTAATATTATCCTATCCTAACGTATAGGCACACCTCAGAGAAGGTCCGCA
AAATATCATTAAGGGCTTTCGCAACAATGTGCGGCAGACAGCACGCCAAA
ACTCGGCGCCTTCAAGTCGGGTTACCGTGTGTGTGGGGGGTAATTTGGGC
TGATCTGTCTCCAGTTTTGAGCCTAGTTGCCAATCAGCTTTGAACAGTAC
GGCTAATTTGAATCGTGCATTGTGCACTCTTGCGGGGATACATGAACGAT
GAACACATACCATTGAAGATATTTTTATTTGAGTTGTTTTTTGGAAGATT
TTTGCGGATCGGCGCTGGTTCAATTTTAGCTCTCCCCCGCCCCCCCCCCC
ATCCCCATGCCGTAGAATTACTCGTCGAATCGATGTATTAATCCGAATAT
GAATACTTGGAGCGTTCGTGACCAAGGTGAAAAGAGTATGTGTTCGAAAA
TGCAGAATTTGCGAACACATAAGAGTAGAGCGTTCACGTCCGGGACACCT
ATTGAGTTCACTATATCAACCTAAATCAAGGTTTATCAACATCGTTTCGT
CATGGAAAAAAAATCCTGACAGAGAGTACGGTATTTGAGCGAGTACACAA
AGAGTATGTAATTCTTTTGACTATTCCAAGTAGATAGTTGTCCGGAGCGT
GAAAGCGTTGATCTCCTGTTTGTTTGTTTTTTTACCATGTTTGCAGCAGC
CAGTCACCATAGACGGTTGTCCAGGTGAGGATATACATTAATCGTGTTCA
TGCTGCATCTTGAGGCGAATATGTGAAATGAGGGTACCAGTTTTTGCCGG
CAGAGATTAGGTCATTATTTTCCTTTTAAGGTGTTTAAGGTGTTTCCGAA
GGTGGCCACCACATATACATAAATAGTTCTTTAATTTCGCCGCAAATCCT
CGGAAGTAGTCGTGCGAGTATTCATCAAGATTTTTTTTACGTCTTTGTGG
AGAGTGTTGGGTTTGAGAGGTACGAGTGCACGTACCTCGACATATTTTTC
GAATTCTTCTGGGTTACGTATAAGGTTAAATTGTGGTTGTACGAAGGTGC
CTCTGCTCTAAAATGAAAATATTTCATCCCCCGGACAAATACCAACATTT
GGCGTATTCGCCACGAAAATTAAAAAAGTATTCGCCTGAGTTTCAAAATG
AGCTTGTGTATTCTATGTGCCCTGAACCATCCACGGGTGAAAATAATACT
CGTAAATCGAATGGACAGGGGTGGGTACTTTATTCCATGTGTCCGCTCAT
TCTGAAACTCAGGCGAATACTTTTTAATTTTCGAGGCGAATTCGCCGAGC
ATTCATATTTGTCCGGGGGTGAAACCTTTATTGGAGGTGTGAAATGTCTT
TACAAAACAAAAGTTAGTTTCGAAATACTGGAGAACTACAGCTGTAATAA
GCAAGGCCGTGTCTTCAACTTCAGCATTGAGAAATGACGTTTTCAAGTAA
TCAATTCTGCGGAGCTCCTCCATGGCTATCTATGTGCGTAGTTCTGATTG
AGGTCGCTTTCTGCCCATGGATGTTGTGTCGATAAGAACTATGCATACAC
TAGGAGGAGCTCTGGAAAATAACTCACTTTCCGAGAATCATTTCTCACTT
TTAGAAGTTAAGACGCAAGCCCAAGGGTACGTGTATGAAGTAGGTGGTCA
TTGTCAGGCGCGGAATACAGATGAAACTTCGGTGTACAGCGGATTTTGCA
CAGTTTGTAGTGTCTGGTGGTTCTCGTGGGTCATTTTTTGCTGTATTACT
GAGTAGGATATAGCATTTGTTGGGGAATTCCCTAGGGCTTTGCGCTGGCA
CATTATATTGCGCAGTACTCACTGGTATTGGCAGTATACTGATGTCGGCT
GAGACGGTTTCCAGTATTCCAGTGTATTGAGGATTGACATGGGTCAATCG
TAAAAATGTCTCATTATTCGTTGCAAACCCCTTTGTTGGTCATTTTCCGT
TGGCCTTGGACTGGGCGTACAGCGCTGCACAGTGCTGCAGTGGTGCGCAG
GGTAGATTAGACACTGGCATACCGCCATTCTGGGTGCTATCAGGGTGACG
GGTGAAATTGTTTTGCTGTTACCCAACCATGAGAATATATCATATTTGTT
CTCGCTGTCACGTTGGCAAGGTTTGGCACTCAAATTTGAAGATAGATGAA
CCAAAACGTCACAATTTTTGGCCTCCCACGGCGCCTCCAGAGGTGCCCCC
TCGCCAGCTGCGGGCGCTATGGCAGCTTAGCCACCCTGGTGCTTCACATC
ACCATACCGATAAACTGGCTGCTGGCGCAGCAGCATGTATTGCTGCCAGT
ATTTAGCCCTAGAATTTCCTCTTTAAACACGGCTGACGTCGAGTAAGGTG
GTCATACTTGTGGAGGACACTCTCATCGTGTAGCGGTTTTTGGAAATATT
TTCCATCCAACACCTCCACAGCGCCAGGGTGTGATGTGATTTATTCTCAG
TTAACGTGTTTTTCATTTGACTACTGTATACCTAGAACTGTATACCTATA
CCTATATAAATGTCTATGGCCGAACATGTTTTTAACCGTAGAGACATAAC
CCATTGCGCTAAAAGGCTCAACCTGCTTTATTCCGCATTTTTTTCTGTAT
ATTTGTCTTGTCTACCTTCTTACCTCTCTCTGTCTGTCTCTCTGTCCATT
GTTCTGCCTTTGTCTATGTCTCCCTGTCTCCATCTCCCTGCCTGTCTCTC
TCGCTCTCTCTTACCCCCTCACCCCCCCTTTTCTGGATCTCTCTCTTCTG
TTCCCGTTCCTTTCTGTTCTCTTCCTGAACACGACAAATTGGAAATCCCC
CTAAAACACAATTTCAGGTAGCGGTACCGCTGGGGGCCCCGGTGCACCTC
TCTCTCCAGACGACAAAGGGGGGTATAAACACGCCCCATTCCCGGGCTGC
TACCGCCTCGTGTCGGGCGACCTGCGGGACACCGGGGTGCTAGAGGACAA
ATTAAGAGCGGCGGGGGTGAATTTCTCCGCTCCCACGGTGTTTTTGGCAG
AGTGCGTGCTGGTTTACATGGAAGATCACGAATCGGATGCTCTTTTGCGG
GTAATTATTAGTTCGCTTTGCGGGTAAATTGCGGGGTCCGCATTCTTCTG
TCGTTTGGTCGCCCGGAAGTTTGTTGCGAAATGTTCTGGTTGCTTAATAT
GATAGGGTGGTCATTATCGTCGTAGTCGTGATATCGGAACAGCTTTTCAA
CTAAAGTAGCTTCTGGAAAAAGATTCGTTGTGCGTGGGTCGAGGACAAAT
CACTTCCTCTTAAAAAAAGCGTTTTTTTCGAAGCAACATAATTTTACAAA
TTATTTTTTGGTAGTCCTGCACTGGCAGAGCGTCGCTTACTTGCTCAGTT
TAAATTCCTTCAAGGCGCAAATATATCCCAGGTCTCCTCACGTGTAGCTG
AGAAAGCCTCGCGACTCATCACTCCAGCGGGCCGCGGCACAATCGCCCGT
TTTAAATACAAGGGAGCTGAAAGTTTGGAATGTAAAGTCATCTTATCCCT
TATTTTGTGTCTATTTTTCGGTCAACTAGCGATCATTCCCCAGACGTTGT
GCACGTCTTGCTGGGGTGATGAGCTGCGGCGCCGTCTCACCCACACGTGA
GTAGACCTGGGACCCTGCGTTACAAGAGGGTCAAATTCAGCCAGTAAGCG
ACCGCGGTCGCTTACTTATGCTAAAATTCTTTGTAAATTATGCTCGATTC
GCAACCACTCTAATAATCAAATATGATCGTGTTTTATCATCCCCCCTCCC
CCACCGATATTCGACTCTTTTTTAGTTACCGATTCCGTTTTTAGTTTCCG
ATTCCGTTTTTAGTTTCCATTTCCGTTTTTTGATCAAACTTTATTTCGAT
CTTTTTTCATTATGGACGTACCATACCCTACCGTACGTTTTTCAAGTTTT
GGAATTTTTGACAGACCTCTCTGGACCCGCGTGATATTATCGTGTTGTAG
CACGATTAACTGAACTCACTTACTTTTATTTGGCCCGGCGGTTGCGTTTA
CCCGTAGTGGTGCTCGTCTACATTCCCGGACTCTCTTTTCGCCGCGTACG
AGATGACCAAGCCCAACGACGCCTTCGGGATCATGATGCGCCAGAACATT
CAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9445:2147..9399-

>mRNA_H-paniculata_contig9445.17196.1 ID=mRNA_H-paniculata_contig9445.17196.1|Name=mRNA_H-paniculata_contig9445.17196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig9445:2147..9399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCACCCACCCCGCAGGAAACTTCGCTCGTGTATCGTGTATCGAGAA
GTTTGTACTCGAATTTCTTGCGTCAGCGGTGGCATCATCGCCATCGTCGT
CATCGCCATCGCCACACGTCAGCGGTCACCACCCACCCACCCCGCAGGAA
ACTTCGCTCGTGTATCGTGTATCGAGAAGTTTGTACTCGAATTTCTTGCG
TCAGCGGTGGCATCATCGCCATCGTCGTCATCGCCATCGCCACACGTCAG
CGGTCAATCAAATTACCACACAACATACCTTGTTTCCCCACGTGCGCATG
TATTACAGGTAATATCTCTCGGTGCTGGCAAGGACTCTCTGTTTTTCAGG
TTGAAAGAGGCCGGACGCGCTCCCACCGGCGGCTACTTCGAAGTCGATTT
CGAAGCCGTATCCACTTGGAAAGCACGGCTAATTGAGACCACCCCAGCTC
TGTCTGCCTTGGCAGATCAAATTACCACACAACATACCTTGTTTCCCCAC
GTGCGCATGTATTACAGGTAATATCTCTCGGTGCTGGCAAGGACTCTCTG
TTTTTCAGGTTGAAAGAGGCCGGACGCGCTCCCACCGGCGGCTACTTCGA
AGTCGATTTCGAAGCCGTATCCACTTGGAAAGCACGGCTAATTGAGACCA
CCCCAGCTCTGTCTGCCTTGGCAGGGGGGTATAAACACGCCCCATTCCCG
GGCTGCTACCGCCTCGTGTCGGGCGACCTGCGGGACACCGGGGTGCTAGA
GGACAAATTAAGAGCGGCGGGGGTGAATTTCTCCGCTCCCACGGTGTTTT
TGGCAGAGTGCGTGCTGGTTTACATGGAAGATCACGAATCGGATGCTCTT
TTGCGGGGGGGTATAAACACGCCCCATTCCCGGGCTGCTACCGCCTCGTG
TCGGGCGACCTGCGGGACACCGGGGTGCTAGAGGACAAATTAAGAGCGGC
GGGGGTGAATTTCTCCGCTCCCACGGTGTTTTTGGCAGAGTGCGTGCTGG
TTTACATGGAAGATCACGAATCGGATGCTCTTTTGCGGTGGTGCTCGTCT
ACATTCCCGGACTCTCTTTTCGCCGCGTACGAGATGACCAAGCCCAACGA
CGCCTTCGGGATCATGATGCGCCAGAACATTCAGTGGTGCTCGTCTACAT
TCCCGGACTCTCTTTTCGCCGCGTACGAGATGACCAAGCCCAACGACGCC
TTCGGGATCATGATGCGCCAGAACATTCAG
back to top