mRNA_H-paniculata_contig9425.17182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9425.17182.1
Unique NamemRNA_H-paniculata_contig9425.17182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 7.100e-64
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 348
            +RAQKKGYEEVHVPAVKHIPV+GE L+PIEDLP W +PAFKGMEKLNRIQSKM +AALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV
Sbjct:  483 WRAQKKGYEEVHVPAVKHIPVEGEKLIPIEDLPKWAQPAFKGMEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A7S0Z8P7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8P7_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 6.670e-47
Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPV-DGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 348
            FR+ KKGYEEVH+PA+K  P  D E L PIE++P+W  PAF+GM+ LNRIQS++++ ALLSPEN+LLCAPTGAGKTNVA+MT+LHE+G HR+ DG+ID  +FKIVYVAPMKALV E+
Sbjct:  457 FRSAKKGYEEVHIPALKPKPFNDDEALRPIEEMPEWAWPAFEGMKSLNRIQSRVYECALLSPENMLLCAPTGAGKTNVAMMTILHEVGLHRRRDGSIDTSAFKIVYVAPMKALVAEI 573
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A7S3Y2E0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E0_HETAK)

HSP 1 Score: 160 bits (404), Expect = 6.810e-47
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 348
            +RAQKKGYEEVHVPA K      EVLV +E+LP W + AF GM  LNR+QSKM+KAA     NLLLCAPTGAGKTNVA++ ML+ +GQH K+DG++D+D+FKIVYVAPMKALVQEV
Sbjct:   36 WRAQKKGYEEVHVPARKTAVPPDEVLVDVEELPAWAQKAFDGMATLNRVQSKMYKAAFEDQGNLLLCAPTGAGKTNVAMLCMLNLLGQHLKDDGSVDLDAFKIVYVAPMKALVQEV 151
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A454XRE1_OSTTA (Sec63 Brl domain-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XRE1_OSTTA)

HSP 1 Score: 169 bits (428), Expect = 2.310e-46
Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPV-DGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 348
            FR  KKGYEEVH+PA K  P  DGEVL  IE++P W  PAF+GM+ LNR+QS++++ ALLSPEN+LLCAPTGAGKTNVA++T+LHEIG HR+ DGT+D  +FKIVYVAPMKALV E+
Sbjct:  450 FRNAKKGYEEVHIPASKPKPFEDGEVLRSIEEMPSWTHPAFEGMKSLNRVQSRVYECALLSPENMLLCAPTGAGKTNVAVLTILHEIGLHRRRDGTVDTSAFKIVYVAPMKALVSEI 566
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.310e-46
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHR--KEDGTIDVDSFKIVYVAPMKALVQEV 348
            +RAQKKGYEEVHVPA++H+  +GE+LVPI DLP W +PAF GM+KLNRIQS+M  AAL   +NLLLCAPTGAGKTNVA++ MLHEIGQHR    +  +D+D+FK+VY+APMKALVQEV
Sbjct:  487 WRAQKKGYEEVHVPALRHVAPEGELLVPIADLPAWTQPAFTGMDKLNRIQSRMKDAALNGGDNLLLCAPTGAGKTNVAMLAMLHEIGQHRYVTVNVPVDLDTFKMVYIAPMKALVQEV 604
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A7S2FFX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FFX4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.080e-46
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQE 345
            +RAQKKGYEEVHVPAVKHIP  GE LV +  LP WC+PAF G++ LNRIQSKM   AL + ENL+LCAPTGAGKTNVA+M ML+ + QHR+ DG+ D+D+FKIVYVAPMKALVQE
Sbjct:  345 WRAQKKGYEEVHVPAVKHIPA-GEKLVAVTSLPTWCQPAFTGIKHLNRIQSKMKTTALETSENLILCAPTGAGKTNVAMMCMLNVLAQHRRSDGSFDLDAFKIVYVAPMKALVQE 458
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: A0A7S2BE45_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE45_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.290e-46
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQE 345
            +RAQKKGYEEVHVPAVKHIP  GE LV +  LP WC+PAF G++ LNRIQSKM   AL + ENL+LCAPTGAGKTNVA+M ML+ + QHR+ DG+ D+D+FKIVYVAPMKALVQE
Sbjct:  345 WRAQKKGYEEVHVPAVKHIPA-GEKLVAVTSLPTWCQPAFTGIKHLNRIQSKMKTTALETSENLILCAPTGAGKTNVAMMCMLNVLAQHRRSDGSFDLDAFKIVYVAPMKALVQE 458
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: R1DUR0_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUR0_EMIHU)

HSP 1 Score: 168 bits (425), Expect = 5.850e-46
Identity = 80/117 (68.38%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIP-VDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 348
            FR  KKGYEEVHVPA+K  P  DGE LV I+D+P W +PAF GM  LNR+QS+++  AL S EN+LLCAPTGAGKTNVA++T+LHEIG HR+ DG+ D+D+FKIVYVAPMKALVQE+
Sbjct:  453 FRVAKKGYEEVHVPALKAKPFTDGEALVRIDDMPAWARPAFGGMSSLNRVQSRVYDCALFSAENMLLCAPTGAGKTNVAMLTLLHEIGLHRQPDGSFDLDAFKIVYVAPMKALVQEM 569
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 167 bits (424), Expect = 7.940e-46
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQE 345
            +RA KKGYEEVHVPAVKH+P   E LV IE+LP W   AF+GM  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA++ +L+EIGQH +EDG++D+D+FKIVYVAPMKALVQE
Sbjct:   30 WRALKKGYEEVHVPAVKHVPDANERLVEIEELPAWTHRAFEGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144
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BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.990e-46
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQSKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQE 345
            +RA KKGYEEVHVPAVKH+P   E LV IE+LP W   AF+GM  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA++ +L+EIGQH +EDG++D+D+FKIVYVAPMKALVQE
Sbjct:  469 WRALKKGYEEVHVPAVKHVPDANERLVEIEELPAWTHRAFEGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9425.17182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI7.100e-6492.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0Z8P7_9CHLO6.670e-4768.38Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A7S3Y2E0_HETAK6.810e-4768.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A454XRE1_OSTTA2.310e-4668.38Sec63 Brl domain-domain-containing protein n=2 Tax... [more]
A0A835YNN3_9STRA2.310e-4669.49Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2FFX4_9STRA4.080e-4671.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BE45_9STRA4.290e-4671.30Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
R1DUR0_EMIHU5.850e-4668.38Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
K8YVZ6_NANGC7.940e-4671.30Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA7.990e-4671.30U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9425contigH-paniculata_contig9425:776..1733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue1.4e-54
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons2
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.5196416-CDS-H-paniculata_contig9425:775..10091622931172.5196416-CDS-H-paniculata_contig9425:775..1009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9425 776..1009 -
1691481623.12685-CDS-H-paniculata_contig9425:775..10091691481623.12685-CDS-H-paniculata_contig9425:775..1009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9425 776..1009 -
1622931172.537179-CDS-H-paniculata_contig9425:1610..17331622931172.537179-CDS-H-paniculata_contig9425:1610..1733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9425 1611..1733 -
1691481623.1448176-CDS-H-paniculata_contig9425:1610..17331691481623.1448176-CDS-H-paniculata_contig9425:1610..1733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9425 1611..1733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9425.17182.1prot_H-paniculata_contig9425.17182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9425 776..1733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9425.17182.1

>prot_H-paniculata_contig9425.17182.1 ID=prot_H-paniculata_contig9425.17182.1|Name=mRNA_H-paniculata_contig9425.17182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
FRAQKKGYEEVHVPAVKHIPVDGEVLVPIEDLPDWCKPAFKGMEKLNRIQ
SKMHKAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDS
FKIVYVAPMKALVQEVRR*
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mRNA from alignment at H-paniculata_contig9425:776..1733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9425.17182.1 ID=mRNA_H-paniculata_contig9425.17182.1|Name=mRNA_H-paniculata_contig9425.17182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at H-paniculata_contig9425:776..1733- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGGGCCCAGAAGAAGGGGTACGAAGAAGTGCACGTTCCAGCCGTGAA
GCATATTCCGGTGGACGGGGAGGTGCTGGTGCCCATTGAGGATCTGCCCG
ACTGGTGCAAGCCCGCCTTCAAGGTGATGTCATCCCCGAATGCTTGGATG
TTTGGTTTAGCTTTGGCATTTTGATGCTGTGGTAGCGCGGGGCGTTTTTC
TTGTTTGTCCCCCCTCCCTCCCTTCCCCCCCGCCCTAGTTGGTGGCCATT
AAATATACTGACCTGTCTTTTATTGTGTTCTCTGCGTCCTTGAATATTGA
ACATTTTTTCACCCTCCGGACAAATGCGAATACAAGACACGAATATATAC
GAGAAATCTGGAACGAATATTGTTTATGTTTTAGTTGGGGAAGATGTCCA
TGTGACGCGAATACTATGCGATGTAGTCGATATACCACGGAGCACCGAGA
AGCTTGGGCAGATTGAATGTTCAATCTGTACAGTACCTACCATCCGGAAA
ACAAACAGGACCTGCATATGTGACTGTTCGCCGGGTATACGACCACGTGG
TGACTATCTGTAGAGTGACCATTCATACACTTGTAAACGAATAAATACGT
GTTTTTACCGAAATCAAATAATGATGGTTCGAGATAGTCGCGAATGCTCC
ATTCCGTATTTGTCCCGGGGGGTGCATTATTTACGCTTGACCTATTCCAA
CCCCCGTCCTTCCGAAATAATCAGGGTATGGAAAAGCTGAATCGGATCCA
GAGCAAGATGCACAAGGCTGCCCTTCTCTCCCCGGAAAACCTTCTCCTCT
GCGCTCCTACGGGAGCTGGAAAAACGAACGTGGCGCTCATGACCATGCTG
CATGAGATCGGGCAGCATCGGAAGGAGGACGGCACCATAGACGTGGACTC
GTTCAAGATAGTCTACGTCGCTCCCATGAAGGCTCTTGTGCAGGAGGTGC
GGCGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9425:776..1733-

>mRNA_H-paniculata_contig9425.17182.1 ID=mRNA_H-paniculata_contig9425.17182.1|Name=mRNA_H-paniculata_contig9425.17182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9425:776..1733- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGGGCCCAGAAGAAGGGGTACGAAGAAGTGCACGTTCCAGCCGTGAA
GCATATTCCGGTGGACGGGGAGGTGCTGGTGCCCATTGAGGATCTGCCCG
ACTGGTGCAAGCCCGCCTTCAAGTTCAGGGCCCAGAAGAAGGGGTACGAA
GAAGTGCACGTTCCAGCCGTGAAGCATATTCCGGTGGACGGGGAGGTGCT
GGTGCCCATTGAGGATCTGCCCGACTGGTGCAAGCCCGCCTTCAAGGGTA
TGGAAAAGCTGAATCGGATCCAGAGCAAGATGCACAAGGCTGCCCTTCTC
TCCCCGGAAAACCTTCTCCTCTGCGCTCCTACGGGAGCTGGAAAAACGAA
CGTGGCGCTCATGACCATGCTGCATGAGATCGGGCAGCATCGGAAGGAGG
ACGGCACCATAGACGTGGACTCGTTCAAGATAGTCTACGTCGCTCCCATG
AAGGCTCTTGTGCAGGAGGTGCGGCGCTGAGGTATGGAAAAGCTGAATCG
GATCCAGAGCAAGATGCACAAGGCTGCCCTTCTCTCCCCGGAAAACCTTC
TCCTCTGCGCTCCTACGGGAGCTGGAAAAACGAACGTGGCGCTCATGACC
ATGCTGCATGAGATCGGGCAGCATCGGAAGGAGGACGGCACCATAGACGT
GGACTCGTTCAAGATAGTCTACGTCGCTCCCATGAAGGCTCTTGTGCAGG
AGGTGCGGCGCTGA
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