mRNA_H-paniculata_contig9421.17179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9421.17179.1
Unique NamemRNA_H-paniculata_contig9421.17179.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.520e-50
Identity = 94/202 (46.53%), Postives = 133/202 (65.84%), Query Frame = 2 
Query:  290 GAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW-PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
            GA+ H GC+ D   DRVL    +    MT  +C+  C    +AYMA Q G ECWCS+DG+++YDRHG  + G CD  C GD+ E    TCGG  +F+LY+L+W P PE+  EYV C+ D + DRV+ +++ +DDMT  +C+ HC     A +YG Q+ +ECWCG S +  +YE+HG G+CHM C+GD ++ACGG+ A+ L+K
Sbjct: 1143 GAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHG--DTGVCDYPCRGDESE----TCGGVHSFNLYRLSWAPAPEDE-EYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKD-APYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 1336
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.250e-48
Identity = 99/243 (40.74%), Postives = 140/243 (57.61%), Query Frame = 2 
Query:  263 RRLEEDAMGGAFS----HKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGE---CDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM--------STSLRGEDLDDDWSADD 943
            R+   D +   FS    H GC+ D   DRVL ++++   MT  MC  HC    + YMALQ+G ECWCS+   ++Y RH   + G+   CD+ C G D E    TCGG +AFDLYKL  P+P ++ EYV CF D ++DR +  ++   D+MT  +C+ +C   G + FY  QYG+ECWCG + ++ EY++HG G C   C GD +IACGG+ AF L++         +T    E  DDD   +D
Sbjct:  299 RKRNNDGVKAEFSLEYEHIGCFADNKTDRVLGHLMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSGTDKGDADLCDLSCYGCDAE----TCGGLYAFDLYKLDGPMPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSS-FYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLDDDDDETATECADEGSDDDDHGED 536
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.840e-46
Identity = 85/175 (48.57%), Postives = 122/175 (69.71%), Query Frame = 2 
Query:  368 MTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW-PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
            MT  +C+  C A  +AYMA Q G ECWCS+DG+++YDRHG  + G CD  C GD+ E    TCGG  +F+LY+L+W P PE+  EYV C+ D + DRV+ +++ +D+MT G+C+ HC     A +YG Q+ +ECWCG S +  +YE+HG G+CHM C+GD ++ACGG+ A+ L+K
Sbjct:  824 MTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHG--DTGVCDYPCIGDESE----TCGGVHSFNLYRLSWAPAPEDE-EYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKD-APYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.450e-46
Identity = 94/214 (43.93%), Postives = 125/214 (58.41%), Query Frame = 2 
Query:  254 PVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
            PV+  ++E      +S+ GC+ D  +DRV  YM     MT  +C  +C    + YMA Q+G ECWCS D  +EYDRH  G    CD  CGGD  +     CGG  AFDLYK+  P      EYV CF D R+DR++G E+ +  DMT  +C+ +C     A FY  QYG+ECWCG S +  +Y++HG G C   C+GD ++ACGGF AF L+K 
Sbjct:  424 PVTMPVDE-----GYSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGV---CDHACGGDAAD----ICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYC-EERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 6.030e-44
Identity = 96/218 (44.04%), Postives = 120/218 (55.05%), Query Frame = 2 
Query:  242 TASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
            T +APV        +  ++S+ GC+ D   DRV  YM     MT  +C  +C    + YMA Q+G ECWCS D   EYDRH  G    CD  CGGD  E DY  CGG  AFDLYK+  P      EYV CF D  +D V+G E+    DMT  +C+ +C  +  A FY  Q G ECWCG S E  +Y + G G C   C+GD ++ACGGF AF L+K 
Sbjct:  382 TVAAPVYEMPVTLPVEASYSYVGCFADNKHDRVFEYMRTSFTMTTAVCLEYCLERRATYMATQYGIECWCSVDAETEYDRHSDGV---CDHACGGD--EADY--CGGFDAFDLYKITEPREPTGDEYVGCFADNPEDWVLGGEIKSQPDMTQAVCRTYCEDLD-ANFYATQNGEECWCGMSEEEEDYTRSGRGSCLAGCSGDPAVACGGFNAFNLFKF 591
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 9.720e-44
Identity = 99/247 (40.08%), Postives = 136/247 (55.06%), Query Frame = 2 
Query:  155 MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
            M R   AL+  A  + +LET  S+RGA V+A    +RR    +   A+ H GCY D        ++ +  E MT  MC+  C  + S +M  Q G+EC CS++  + Y      ++G CD+ C GD  E    TCGG    DLYKL      ++ EYV C+ D  + RVM +++V + MT  MC++HC S   A +Y  QYGNEC+CG S +  +YE HG G CHM C GD   ACGG+ AF LY+ 
Sbjct:    1 MTRLAAALLVCATPVASLET--SLRGAEVSAGG--ARRGLSGSSYEAYEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAF---DFGVCDIPCAGDSDE----TCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCES-SDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQF 235
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.860e-43
Identity = 103/267 (38.58%), Postives = 143/267 (53.56%), Query Frame = 2 
Query:  155 MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKMSTSLRGEDLDDDWSADDDEP 952
            M R   AL+  A  + +LET  S+RGA V A+A  +RR    +   ++ H GCY D        ++ +  + MT  +C+  C  + + +M  Q G+EC CS++  ++Y      E G CD  C GD  E    TCGG    DLYKL      ++ EY  C+ DL + RVM +++V + MT  MC++HC S   A +Y  QYGNEC+CG S +  +YE HGPG CHM CAGD   ACGG+ AF L+K       +    D S    EP
Sbjct:   65 MTRLAAALLVCATPVASLET--SLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSF---ESGVCDEPCAGDSTE----TCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCES-SDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEP 321
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.600e-42
Identity = 90/213 (42.25%), Postives = 119/213 (55.87%), Query Frame = 2 
Query:  254 PVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
            PVS   EE      +S+ GC+ D   DRV  YM     MT  +C  +C    + +MA Q G ECWCS D  +EYDRH  G    CD +CGG+  +     CGG  AFDLYK+  P      EYV CF D R+DR++G E+ +  DMT  +C+ +C     A FY  QYG+ECWCG S +  +Y++HG G C   C+GD ++ACG      +YK
Sbjct:    2 PVSMPAEE-----GYSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGV---CDCECGGEATD----ICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYC-EERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYK 201
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 3.660e-41
Identity = 89/221 (40.27%), Postives = 121/221 (54.75%), Query Frame = 2 
Query:  293 AFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRH--------GRGEYGECDMKCGGDDGEDDYVTCGGHFAFD------------LYKLAWPLPENNGEYVQCFGDLRDDRVM-GEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
            A++H GC+ D  +DRVL  MI    MT  MC+ HC    + YMA Q+G ECWCS D  ++Y RH        GR +YG C  +C GD     + +C    A +            LYK+  P      EYV CF D  DDR++  E+    DMT  +C+ +C   G A FY  QYG+ECWCG S +  +Y++HG G C  +C+GD + ACGGF +F L+K+
Sbjct:  450 AYTHVGCFSDNKEDRVLEAMITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGR-DYGLCGTRCEGDKVRILHGSCRQREALENHAMGEIRNLHYLYKITEPTEPEGEEYVGCFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFG-AHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFKL 668
[Close]
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.090e-31
Identity = 77/202 (38.12%), Postives = 105/202 (51.98%), Query Frame = 2 
Query:  308 GCYFDEAQDRVLWYMIRHEKMTPLMCHGHC--DAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW---PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAK-FYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKMS 895
            GCY D+  DRVL  M     MTP +C  +C  ++   AY A+Q+G ECWC +D  ++  RHG      CD  C GD      ++CGG +AF LY L     P P  +  YV CF D   DRV+G    +  MT   C ++C +      +Y  QYG +CWC    +L    +HG G C   C GD    CGGF+AF L++++
Sbjct:  282 GCYKDDPSDRVLTAMWSSPVMTPSVCAAYCHRESASYAYYAIQYGGECWC-QDTDIDL-RHGEAT---CDYACSGDAS----ISCGGFYAFTLYDLEGANLPTPPADDNYVGCFADDLQDRVLGAETSSSSMTSEACADYCANESPRNMYYATQYGAQCWCAEEVDL----RHGEGRCAYACTGDAKTTCGGFEAFDLFEVN 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE8_ECTSI2.520e-5046.53EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FXK6_ECTSI1.250e-4840.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ37_9PHAE2.840e-4648.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LED7_ECTSI4.450e-4643.93EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED9_ECTSI6.030e-4444.04EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LGP4_ECTSI9.720e-4440.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBW3_9PHAE1.860e-4338.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMV6_9PHAE2.600e-4242.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN72_9PHAE3.660e-4140.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G975_ECTSI5.090e-3138.12Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9421contigH-paniculata_contig9421:3432..9181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue6.9e-46
Seed eggNOG ortholog2880.D8LED7
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons6
Model size2333
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9421.17179.1prot_H-paniculata_contig9421.17179.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9421 4116..7803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.015727-UTR-H-paniculata_contig9421:3431..35741622931172.015727-UTR-H-paniculata_contig9421:3431..3574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 3432..3574 +
1691481622.8136435-UTR-H-paniculata_contig9421:3431..35741691481622.8136435-UTR-H-paniculata_contig9421:3431..3574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 3432..3574 +
1622931172.0356688-UTR-H-paniculata_contig9421:4104..41151622931172.0356688-UTR-H-paniculata_contig9421:4104..4115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 4105..4115 +
1691481622.826205-UTR-H-paniculata_contig9421:4104..41151691481622.826205-UTR-H-paniculata_contig9421:4104..4115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 4105..4115 +
1622931172.1237824-UTR-H-paniculata_contig9421:7803..91811622931172.1237824-UTR-H-paniculata_contig9421:7803..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 7804..9181 +
1691481622.8980901-UTR-H-paniculata_contig9421:7803..91811691481622.8980901-UTR-H-paniculata_contig9421:7803..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9421 7804..9181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.0509958-CDS-H-paniculata_contig9421:4115..42051622931172.0509958-CDS-H-paniculata_contig9421:4115..4205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 4116..4205 +
1691481622.838742-CDS-H-paniculata_contig9421:4115..42051691481622.838742-CDS-H-paniculata_contig9421:4115..4205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 4116..4205 +
1622931172.065646-CDS-H-paniculata_contig9421:4540..46751622931172.065646-CDS-H-paniculata_contig9421:4540..4675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 4541..4675 +
1691481622.8562546-CDS-H-paniculata_contig9421:4540..46751691481622.8562546-CDS-H-paniculata_contig9421:4540..4675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 4541..4675 +
1622931172.0842996-CDS-H-paniculata_contig9421:6521..68931622931172.0842996-CDS-H-paniculata_contig9421:6521..6893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 6522..6893 +
1691481622.8680973-CDS-H-paniculata_contig9421:6521..68931691481622.8680973-CDS-H-paniculata_contig9421:6521..6893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 6522..6893 +
1622931172.0996108-CDS-H-paniculata_contig9421:7241..73501622931172.0996108-CDS-H-paniculata_contig9421:7241..7350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 7242..7350 +
1691481622.878365-CDS-H-paniculata_contig9421:7241..73501691481622.878365-CDS-H-paniculata_contig9421:7241..7350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 7242..7350 +
1622931172.1113575-CDS-H-paniculata_contig9421:7708..78031622931172.1113575-CDS-H-paniculata_contig9421:7708..7803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 7709..7803 +
1691481622.8884277-CDS-H-paniculata_contig9421:7708..78031691481622.8884277-CDS-H-paniculata_contig9421:7708..7803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9421 7709..7803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9421.17179.1

>prot_H-paniculata_contig9421.17179.1 ID=prot_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSH
KGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCS
KDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLP
ENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQY
GNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKMSTSL
RGEDLDDDWSADDDEP*
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mRNA from alignment at H-paniculata_contig9421:3432..9181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9421.17179.1 ID=mRNA_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5750bp|location=Sequence derived from alignment at H-paniculata_contig9421:3432..9181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACCGCACCCTCTCACGCACACAACAATCCTCTCGACTTCCTCTGCC
GGTGCCTTCTCGTGTGCATCCTTTGTCGTATTCCCTTCTTCGCCTTACTG
GACCAAGGTTCTTCATCTTCGATTGGCGGCTAGTGCAAGTCAGGTAGGCG
GTGACATCCTAGATATTTTTGGGAGATGTTCGAGGTTTGCTCCGTTGGAT
ATGAGAGAATTAGTCTTTTGGACTGAGCGAAGGACCGTTGTGTGTACGAA
CGTTCAAAGCCATCCCGAAGTTTTTGGACACGATAAAAATTGCGGGATCG
GATGAGTCAAGTGAGATACAGTTGTTCTCGTTGCTGTTGACAACATCACT
GCATCTCCCATCTGCGCCTCCTAGTTGGTGTAGTCTTCAGCTTGTAATCG
ACGATGCACCATGCATTAGGCTTTGACATATTGCAGCTTTTTTTCGTTGT
TTTGTGCCTCCGTCGAACAAGAGAGGAGAGACATGAGTTTTCTTAGTCCA
ACGATGAGTTTCGAGAACATCTTAGAGTCACAGCCCCTTTGCCACTCTGC
CCCTAACAGGAAACATTCAGTCGTGCGCGTTCTACAGTACTCCTACATGA
AATATCACTCGTCCGGTTGGTTGCACCCTCCGTTCTTCACCCCTTCCTTG
GATCGTGAATATCATCCTCTTAGGTGTGTGCAAAATGGCAAGAGCGGTGT
TCGCGTTGGTGGCTATGGCACCCGCCATCTTGGCTCTGGAAACTTTCAGT
TCTGTACGTGGAGCAGCAGTGACGGTAAGTCGTGTGCCGTGACACTGTAC
TCTCTGGCGAGTGATACATGCTCGCAGCTGGGACATGTTGCACGTCGTGT
GCGTAAGTACACGAAAGGCGTGGGCACGGCGAAACCCGCGATTCCTTTGC
GTGTCAGTCACAATCCTCTCGTGTTCAAAGCTTGGTTGAAAAAGAGTAGA
TGAAAGTTGTCAGTTTTTGCACAAACTAAAAAACCTTATGGCATCAAAAC
TCTCACATCGCTACGACATGAATGCTGAACTCTCATGGAACCCCACCGAT
CCTACCCCTGCCAAACGCCCAACTTCACTGGAACGGCTCGTACACTCATG
TTTTGATAGGCTTCCGCACCTGTCTCACGGAGATTGGAAGAGGATGCTAT
GGGAGGCGCCTTCTCTCATAAGGGTTGCTATTTTGATGAAGCGCAGGACC
GGGTTCTTTGGTACATGATCAGGCACGAGAAGATGACCCCTTTGGTAAGT
TATTTCTCCTTTCTTTGAGCGAGTTGTTTTCCTACAGAAGGTGCAATAGG
AACCAGCCTGGAAAAAAGATAGAGATCATGCCGAGAGAGGCGATGTTTGT
ATTTGTGCACACGATTTTTGGCTTAGCTCTGTGCGTTTCTTGGAGATGAT
CGATCTGTGCAACACCCGAAAGCACAATGCACATGTTGCGATGTCCCATT
TTTCCGAAAACAGATGTATCGTACATGTCAACAAGCTTTGGCTGTATCTG
GAGACCGAACTTGAGATGGCGATAGGGATCTCAATTGTTTACCCGCCGCC
GCATTCCCCCTCCACGACATCCGCTGATTTATTCGTTGAGTGCGTGTGTG
TTGGATTTTCGTCACATTTGTGGTGAGGTGCAGCTCGTCACAACGTATGT
GATAGCATCGGACAACGTCGAGTACGTGATGCAATGTCTTGATCTAAGTG
CAACCCTTGAACTTGATATGTGGGAACAGGTGTTGATGCTGCCAGCATGT
TAGCCGCTGTGAAGATCTGGCTGCGAGGCATTTTGCTGCAAATTCCAAAT
TCAACAGAGGGTAGTTTTTTCCTTTGGAAACAGCGATGATTAGAGTTTGA
GGCTCCAGTACTATGACCTTCCCATGTAGACTTCATGGTTTGCTTGGCTG
TACCCCCACGTTCTCCGGCGTACAATCCCCCCCTCACACTAGGTGGGAAA
CGTTCGTGTATGAAGCAAACGTTCCCTCTAAACAAGTCTGAAGTGCTTGA
AAGGGCAACAGTCTGCAGTGGCAAACACTTGGTCGGATGTACGATACCGT
GTCGACTGTTCGGAATTTGAAACTGCATGAAGCCTACACCGGTATAACTA
TGGAGAATCCTTGTATTCATGAAGCGCAACGGTTTCTGAACTGTGGTGTG
TAAAGAAGAATAGGTATCGTTTCGAATTTGCTCGAGGGGAATTAGTTCAA
CCCTTGCGGTGTTCCGTCGCAATTTGGTGACATGTTCAATTCTTTTGTTA
AATCATGCCTCGTTTCTAGCAGCAACTGCTGAAAGTTACTCTATCGTTGC
ACTCTTCTCACAATCTTTCCATGAAAGAAGAGGATAATAGCCATCCGATG
TGTACATGGACCTTGAAAGGTTGTAATCTACCATGTGAATCACTTGAAAG
TACTTCGAATGGAATTACACTGTCGGACCCATTCCTGTCCACATGTGGAA
TTCCCAAAATCAAGATAGAGGGGAAGAGTAGTCCTGCTTCCTCTACGTCC
ACTTCTTGGCATCCCAGTTTTCTGCGCACAACGTACTGTGTCTAAATTCG
AAGGATCCCTTTATTGAAAAAGGTGTCGGTCCATCTTTATGGCTGAAGCC
TCGTGGATTTGGTCACAAGTTTGTAGGACACGTCCTGTAGCTTCCAAATA
AACCGTTAGACCAAGCGTCACCTCTCGTATTAAGATCAATTTGATAGGCT
GATTGTACGGAAGTAAATATTATTTTCCACAATTCAAAGCTACACATGAA
GCCAGACGAGCACCAAGTCCGTGTGTGTTGCTCTTGAGCAGGTTCACTCG
TTATAGCGTTCCCTGGCTCATGCAGCGAAGGGTATCAAAACCGTGGTTAT
CAGTCCCGTAAAAAAAAAACGGGAACCCGGGGATGAACACCGTGCCCCAA
CACACCTAAACTAAGACTAGGCGCATGTTGAACTTTCAGCTGCTGCAGAC
CAATCCGCGTCGAAGAGAAACGGGAGAATGGTTTTCCATCTATCCCATCT
ACTGTGTATCATGGGCGCATGTGTTATTTGGTGTTATATAGTCTGCCACA
TTCTCCGATTTTCCCCGTTTTTCCCGGCATCCTCCAACAGATGTGCCACG
GACACTGCGACGCAATGGAGTCTGCCTATATGGCTCTGCAACATGGTGAC
GAGTGCTGGTGCAGCAAGGATGGTGCCATGGAGTACGACAGACACGGCCG
GGGCGAATATGGAGAGTGCGACATGAAGTGCGGCGGCGATGACGGAGAAG
ACGATTATGTTACCTGTGGGGGGCACTTTGCGTTCGACCTGTACAAGCTG
GCGTGGCCTCTTCCCGAGAATAACGGGGAATACGTGCAGTGCTTTGGTGA
TCTCAGGGATGACCGCGTAATGGGAGAGGTGATGGTCGCGGATGACATGA
CCCCGGGCATGTGTAAGAATCATTGCATAAGTGTTGGGGGCGCCAAATTC
TACGGACTACAGGTGAGAGAAGCAGTCCGTATCCCGAAACAACATAGAAT
AAAAAAAATATCTTGAACCAAGGGACCTGCCCCGAGCTCTTCATGCTTTG
CCCCCGCTTCGCCTGCCCCATTCTCTGCTTGGAATGAAATTTGAACGGAT
AATTCGAGAATCGAAAATGAAGGACCCGTGGATCCCGCATCGCATGTGTC
GTGAGAGCGTAGCATTCGACCATGAAAGAACTTGCACGATGTCGATGATG
TGTCGGATAAACGCCCCTACATCTGCTCTGGTCTGGCGTCGACAAATCTG
ATTGCGTATTCGCACGTGCTGGTCTTCTGCTTATGTTGCTGCACTTGATG
CTGGCCGCAGTACGGAAACGAGTGCTGGTGCGGAAGGTCGTACGAGCTTC
TTGAGTACGAGAAGCATGGTCCTGGAATTTGCCACATGAAGTGTGCTGGC
GACCACTCCATTGCTTGCGGTAAGAAGCAAAAATGTTCCCATCTGGCGCC
CATAGTGGACTGGTGATGACCGATTATAGTGAAAAGTATCACCCAATCTG
ACCGCAGCGTACTAAACCCTATCAAATACTAAATCGTGTTCTCGATCGAC
TGTTATCTCTTGCATTTTTGCACTTGAGAGGCACAAGTTGAGAGGTCAGC
CTTAGCATTTGATTATACTACATTAACGGTGCCAAACTCCCAATAACCGC
AGTTACGTAAACATCAACGAGGAAACGTACTGGGTACGGAAGTTGATATA
TTAAAAACATGGCGTTCTAGGTCTTAACATCCAGATGCATGCTTCCTTCC
TTATTTACCCCCGTCCGCGAACGACAGGTGGATTCCAAGCGTTCGGTTTG
TACAAAATGTCGACCTCGTTGAGAGGCGAGGACTTGGATGATGACTGGTC
AGCCGATGACGACGAGCCGTAGTGGAACATCGGGCGAATTCGCGTCCGGT
TGTCACGCCTAGCGTTTGGTGTGTAGGACGGAGATCATCGATTTGTCGTC
GATTGTGGAATTGAAACCTTCTGGTGCTTCAGAAGGGGGACGGAGGCGCC
GCGTTTGTCGATATAGAGGTGACTACGCCTCTGTGTGCTGCCTGCGGAAC
TGGTGGTGGAACGCAAGGGTGGCACATGTGCGCAGGAAAGAGTTTAAGTG
AGCAGGCCTCTCTTCTGGTTTGTTCATGTTATTTTCGGTTCTTTTACACT
ACCCTAGTGATCTGTCTCTTGTGTGGATTGGGGAACGTTTGGAGAAACGG
TAGTCCATCCAACATGTGTGTCGTATTTTTGTCATTATTTTCCCTACGAA
TATGATTTGTATGTCGTCGTTCGTAAACGTTTTTTTAGTGAGCCGGCGCC
AAGAACTTTGCGGTTAAGTTTGGGGTGCTATCAATTCGAAATGTGCGCCG
AGAGAACTTGGATACGATCCGACACGGTGAAACGATGCGATAGAACAGAC
TGGACCAAGTAAATATGGCAGTTTGCTGTGCGTTGTATGATATGAATTAA
ACATGGCGGAGAGTTAGCGGATAATGATAAACGTCGCGGCATAGCTTTAG
TACGGACTTGATTTTGCCGTTCACCGTCTGTTGAATGTGGTTGGTCTGAA
GGGAAAGAGGATGGCATCACGAGTGTGTGGGGTGAGGAAGAGTGAAGGAA
TGATATTGTGGGATGTCGATTGTACACACGAACCAAACTACTACTTGTGT
ACTGTTTGCTTGGGGTGGTGTTTCTTCGCACGATTAAATTTGCCTGCATA
ATGCGATGGAGAGAAACTACAGTACAGTTCAGAAGACAGTACCCGTGTTT
TCATAGGTTTGAGTGACCCGAAGTGACCGATCCGTCTTGGTGGGAAGAGA
GGCGTTTATAGGTTAACTGCAAAGTTGGAATTGAAACGAGCATCTGGGAA
TGCATATGTTTCAGTTTGTTTTGTATTTTTACAGTGAGAAGTTGTTTGTG
GCCAACCCACCCGTCTACAGGATTCCTGTACCCTCGTTGAGTTATTGATC
TTGAATACGTTTGTTTTGATGTTTGGTGATAGGTCTTGTCAAGCTTGCGC
TATACGTTTTCCTTGAGCGGGCGGGCGTTTCTCGCTGAAGCGGGAGTTTT
TTCAATTATGTACGCCTGCTCGTCGTGTTGCCGATCGTGAGCGTCAATTA
CTGGAATATTGTAGAAGAATGAATACTGTGTTGGTGTTCGCGTCTAGTTT
TTCATATGGTTGGTACCATGCATGAAGCGTCGGAGTTTCGCCTTTCCAAT
GGGCTGGGAAATATACTTGAGAACAGAATATATGTATCCATTATTCATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9421:3432..9181+

>mRNA_H-paniculata_contig9421.17179.1 ID=mRNA_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig9421:3432..9181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCGGTGTTCGCGTTGGTGGCTATGGCACCCGCCATCTTGGC
TCTGGAAACTTTCAGTTCTGTACGTGGAGCAGCAGTGACGATGGCAAGAG
CGGTGTTCGCGTTGGTGGCTATGGCACCCGCCATCTTGGCTCTGGAAACT
TTCAGTTCTGTACGTGGAGCAGCAGTGACGGCTTCCGCACCTGTCTCACG
GAGATTGGAAGAGGATGCTATGGGAGGCGCCTTCTCTCATAAGGGTTGCT
ATTTTGATGAAGCGCAGGACCGGGTTCTTTGGTACATGATCAGGCACGAG
AAGATGACCCCTTTGGCTTCCGCACCTGTCTCACGGAGATTGGAAGAGGA
TGCTATGGGAGGCGCCTTCTCTCATAAGGGTTGCTATTTTGATGAAGCGC
AGGACCGGGTTCTTTGGTACATGATCAGGCACGAGAAGATGACCCCTTTG
ATGTGCCACGGACACTGCGACGCAATGGAGTCTGCCTATATGGCTCTGCA
ACATGGTGACGAGTGCTGGTGCAGCAAGGATGGTGCCATGGAGTACGACA
GACACGGCCGGGGCGAATATGGAGAGTGCGACATGAAGTGCGGCGGCGAT
GACGGAGAAGACGATTATGTTACCTGTGGGGGGCACTTTGCGTTCGACCT
GTACAAGCTGGCGTGGCCTCTTCCCGAGAATAACGGGGAATACGTGCAGT
GCTTTGGTGATCTCAGGGATGACCGCGTAATGGGAGAGGTGATGGTCGCG
GATGACATGACCCCGGGCATGTGTAAGAATCATTGCATAAGTGTTGGGGG
CGCCAAATTCTACGGACTACAGATGTGCCACGGACACTGCGACGCAATGG
AGTCTGCCTATATGGCTCTGCAACATGGTGACGAGTGCTGGTGCAGCAAG
GATGGTGCCATGGAGTACGACAGACACGGCCGGGGCGAATATGGAGAGTG
CGACATGAAGTGCGGCGGCGATGACGGAGAAGACGATTATGTTACCTGTG
GGGGGCACTTTGCGTTCGACCTGTACAAGCTGGCGTGGCCTCTTCCCGAG
AATAACGGGGAATACGTGCAGTGCTTTGGTGATCTCAGGGATGACCGCGT
AATGGGAGAGGTGATGGTCGCGGATGACATGACCCCGGGCATGTGTAAGA
ATCATTGCATAAGTGTTGGGGGCGCCAAATTCTACGGACTACAGTACGGA
AACGAGTGCTGGTGCGGAAGGTCGTACGAGCTTCTTGAGTACGAGAAGCA
TGGTCCTGGAATTTGCCACATGAAGTGTGCTGGCGACCACTCCATTGCTT
GCGTACGGAAACGAGTGCTGGTGCGGAAGGTCGTACGAGCTTCTTGAGTA
CGAGAAGCATGGTCCTGGAATTTGCCACATGAAGTGTGCTGGCGACCACT
CCATTGCTTGCGGTGGATTCCAAGCGTTCGGTTTGTACAAAATGTCGACC
TCGTTGAGAGGCGAGGACTTGGATGATGACTGGTCAGCCGATGACGACGA
GCCGTAGGTGGATTCCAAGCGTTCGGTTTGTACAAAATGTCGACCTCGTT
GAGAGGCGAGGACTTGGATGATGACTGGTCAGCCGATGACGACGAGCCGT
AG
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