mRNA_H-paniculata_contig9400.17167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9400.17167.1
Unique NamemRNA_H-paniculata_contig9400.17167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9400.17167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9400contigH-paniculata_contig9400:6957..9073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.5916052-CDS-H-paniculata_contig9400:6956..71271622931169.5916052-CDS-H-paniculata_contig9400:6956..7127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 6957..7127 +
1691481621.8153136-CDS-H-paniculata_contig9400:6956..71271691481621.8153136-CDS-H-paniculata_contig9400:6956..7127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 6957..7127 +
1622931169.6073833-CDS-H-paniculata_contig9400:9015..90721622931169.6073833-CDS-H-paniculata_contig9400:9015..9072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 9016..9072 +
1691481621.830598-CDS-H-paniculata_contig9400:9015..90721691481621.830598-CDS-H-paniculata_contig9400:9015..9072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9400 9016..9072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9400.17167.1prot_H-paniculata_contig9400.17167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9400 6957..9072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9400.17167.1

>prot_H-paniculata_contig9400.17167.1 ID=prot_H-paniculata_contig9400.17167.1|Name=mRNA_H-paniculata_contig9400.17167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
VEGQSPSGGSGGCGRDNGDGGLLRPQQQRVSSANGHDDMLAVLEASDTKL
GQSLLKEALAMYGTVDHRGQEGADLA
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mRNA from alignment at H-paniculata_contig9400:6957..9073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9400.17167.1 ID=mRNA_H-paniculata_contig9400.17167.1|Name=mRNA_H-paniculata_contig9400.17167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2117bp|location=Sequence derived from alignment at H-paniculata_contig9400:6957..9073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAGGCCAGAGCCCGAGCGGCGGCAGTGGTGGCTGCGGCAGAGACAA
TGGAGACGGTGGGCTTCTGCGGCCGCAGCAGCAGCGTGTGTCGAGTGCTA
ATGGTCACGATGACATGCTTGCTGTTTTGGAGGCGAGCGACACTAAACTG
GGGCAATCACTGCTGAAGGAGGTATGTAGAGCCAGGCGGGGTTGCGTTGT
GCGCCTCGTGTTTGTACTTGTGGATGGGTGCCGTTACAGTCCAACTTTTC
AGAAAAGTATAGTAAAGCTATAGTATCTCTTCCGTCGAGACGCGCCCTTC
TGCCATGAATGTCGGGGTAATATGCGTGTTCAGTACGTTTCTTGCGAGCT
TCATAGATTTTTGGTGCAGCGCGAAGATAGCTCTGAGTTAGGAGCGAATA
AGGCGGGAAAGTGTTTTGTGCACCATATTAATAGGGAATACGTAAACTGT
TTACCTGCCCAGACAACGTACGAATACTTGGTACTTGGTGTATTTGCGAC
GAAAATTCCAAAGTATTTGTCCGATTTTTAGTATGAAAGTGTTTGCCCCC
TGTTTATTCGTTTAATCAGTATTCGGGGGAACTGTAGATGGTCCGAAGCT
CATATAATTAAACGATATGCTAAATCTCCAGGCAAGTTATATATAGAGCT
TTATATATGTATACTTCCTGTGCTGTAAGTAAAGTCGGTTGAATTTACAG
AGGCACATACATCCATCTCATTTTATTTATTTTTTCAAGTTACAATCCTA
CATATTCTTGGAGTTGATGCCCAGAATTTTCACGGACATTGGCGAAATCC
ACCGCGAGCGCGCGACGCAAAGAAAAAATGTTGGCTAAAAAAAGACCATA
TATTGCCCTTTTTTGGAAAAAGACCATATTTTTTCGACACCGGCATCGTA
GCTGGCGGCGATCTCAGCTGCTTTCCCCCCCGGTAATCTACTTTGGTCCG
GCGGAAATGCCCTCGCGTACCGGCAGCCCAGGGGCAGCTCGGGGCTCCGC
ATCCTGCGTGGAGGCGTGTTTATGGGCGAGTCCATCATGTTTGTGTTCTT
CTGGGCGCAGGTGGTTCGGCGATCAATCTGCAAAAAGTTCTGTCGGAACA
AGTTGTCGGAATCGGAGCTCGGAATGTTTTACGAGAATAGTCTTGTTCTA
GCTTTTCAATGATTGTTATCCCAACCTTTGAGAGAAATACATGTAGGGAT
CTGCCAAACTTAACTGACTTTACTTGTGGCACAGGGGCAATGTTTTTTTT
TGTTTTCCATCGCAAATAGTAAAATGCCTGAAGCGATTGTATTTTTCCGG
ATGGTGAAGCTTGCTGGTCAACGGTACTGTCCAGCATAGTGCGTAGAAAA
CGCCCCGCCCCCCCAATTACTACTATGGGTTCAAATAGACATCGTTCTCC
TCATCACGCACGCGATTGCTTTTCCGTGATTTATTTATTTTTTTTTGGGG
GGGGGGGTACCCTCTTCCCCCTGACCACGGGTATTGATTGTAGCTTCGGC
TATGCTTACAAGTGTTTAGGTTAGTGTAGCCGTGCCTTAAGACGGTTCCA
TGGACGTGCCCCACCCATTATTTCCTTCTCCTGCTTGATATGACACATGA
CATATATGCGTACGGTACTTCTCTCAATTTGTCCCTGTGCCGTATTTTGT
TACTCGTACGACTCGACTGTTGGTCCTGCCCCTCTGTTCGCGTGGTGAGC
TCGACCGAGGTTAAAAGCCCGGGAGCGAGAGAGGGGGTGTATAAATAATA
TTTTTGTCATGTTGCACTTGGAGAGGGGGTGCAATATATATATATAATCA
CTACGACGAGCTTGCCCCTTTATCCTCGTGGGCTGGCGGGGTGCTGCCAG
TTAGAGATTATAAAAGCGGTACTGCTGATATGTGTAACCAATACTCACGT
TCCCCCTTGGTTTTATCGTATTTCTATGGCGATGAGCACTTTTAGAAACA
TCGAGGTATTACTCTTGCTGCAGTATACTACCGGTGCTCACTTGTCTGTC
ATGGTATCCCCTCGTTGGCTTGACACGCGATCCGTATATTTGGCCTTGCT
TACTTGCAGGCGCTAGCCATGTACGGCACAGTAGATCATCGTGGTCAAGA
GGGCGCGGACCTGGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9400:6957..9073+

>mRNA_H-paniculata_contig9400.17167.1 ID=mRNA_H-paniculata_contig9400.17167.1|Name=mRNA_H-paniculata_contig9400.17167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig9400:6957..9073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAGGCCAGAGCCCGAGCGGCGGCAGTGGTGGCTGCGGCAGAGACAA
TGGAGACGGTGGGCTTCTGCGGCCGCAGCAGCAGCGTGTGTCGAGTGCTA
ATGGTCACGATGACATGCTTGCTGTTTTGGAGGCGAGCGACACTAAACTG
GGGCAATCACTGCTGAAGGAGGTAGAAGGCCAGAGCCCGAGCGGCGGCAG
TGGTGGCTGCGGCAGAGACAATGGAGACGGTGGGCTTCTGCGGCCGCAGC
AGCAGCGTGTGTCGAGTGCTAATGGTCACGATGACATGCTTGCTGTTTTG
GAGGCGAGCGACACTAAACTGGGGCAATCACTGCTGAAGGAGGCGCTAGC
CATGTACGGCACAGTAGATCATCGTGGTCAAGAGGGCGCGGACCTGGCCG
CGCTAGCCATGTACGGCACAGTAGATCATCGTGGTCAAGAGGGCGCGGAC
CTGGCC
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