mRNA_H-paniculata_contig9381.17151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9381.17151.1
Unique NamemRNA_H-paniculata_contig9381.17151.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9381.17151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9381contigH-paniculata_contig9381:6338..6954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size617
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9381.17151.1prot_H-paniculata_contig9381.17151.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9381 6443..6829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.6418827-UTR-H-paniculata_contig9381:6337..64421622931166.6418827-UTR-H-paniculata_contig9381:6337..6442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9381 6338..6442 +
1691481620.2990625-UTR-H-paniculata_contig9381:6337..64421691481620.2990625-UTR-H-paniculata_contig9381:6337..6442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9381 6338..6442 +
1622931166.6811266-UTR-H-paniculata_contig9381:6829..69541622931166.6811266-UTR-H-paniculata_contig9381:6829..6954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9381 6830..6954 +
1691481620.3188634-UTR-H-paniculata_contig9381:6829..69541691481620.3188634-UTR-H-paniculata_contig9381:6829..6954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9381 6830..6954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.6628735-CDS-H-paniculata_contig9381:6442..68291622931166.6628735-CDS-H-paniculata_contig9381:6442..6829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9381 6443..6829 +
1691481620.3109388-CDS-H-paniculata_contig9381:6442..68291691481620.3109388-CDS-H-paniculata_contig9381:6442..6829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9381 6443..6829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9381.17151.1

>prot_H-paniculata_contig9381.17151.1 ID=prot_H-paniculata_contig9381.17151.1|Name=mRNA_H-paniculata_contig9381.17151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MVFLLRKEEERILQIATQNRSLVCNGRIGLLAFFRSTAGSLFFFSLCGVA
VMSQVLSCLLHVFYREGVVRDMGGIIPQLLPPPPSLFPSPLLPLSAAPLA
HLSTPAFTAEHLISCYGRRRTIFRTITR*
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mRNA from alignment at H-paniculata_contig9381:6338..6954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9381.17151.1 ID=mRNA_H-paniculata_contig9381.17151.1|Name=mRNA_H-paniculata_contig9381.17151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig9381:6338..6954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGTGGGGCGCTCATGAGTTCGATCGTGTGTGCGTGCTTCGGTCCAG
GGCTGGATGCGGCACACGAAACAAAAGGTACAAAGTTGTGTTGAATAATA
TTGTGATGGTGTTTTTGTTACGAAAAGAAGAAGAAAGGATTTTGCAGATA
GCAACGCAAAATCGATCTCTCGTGTGTAATGGTCGAATCGGACTGTTGGC
TTTTTTTAGGTCCACGGCGGGGTCGCTTTTTTTTTTCTCCCTTTGTGGTG
TTGCTGTTATGTCCCAAGTACTTTCTTGTTTGCTACATGTTTTTTATCGA
GAAGGCGTGGTTCGAGATATGGGGGGAATTATCCCGCAGCTCTTGCCTCC
CCCTCCTTCTCTCTTCCCCTCCCCTCTCCTACCGCTATCCGCCGCCCCCC
TTGCGCATTTATCGACCCCCGCTTTTACAGCGGAACACCTAATTTCTTGC
TATGGCAGAAGACGGACGATTTTCCGTACGATAACTAGGTAGTCGTTTTA
CTCATGGTGCGTGGGCTATTGAATGCGAGGCAGGAGGCGCGGTTTGGGGC
ATGCCGTAGGTTATGCTTAGCTCCATCCTTAGTAGTGTACTTTTGCGATA
CGGTTTGTGCATGTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9381:6338..6954+

>mRNA_H-paniculata_contig9381.17151.1 ID=mRNA_H-paniculata_contig9381.17151.1|Name=mRNA_H-paniculata_contig9381.17151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig9381:6338..6954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTTTGTTACGAAAAGAAGAAGAAAGGATTTTGCAGATAGCAAC
GCAAAATCGATCTCTCGTGTGTAATGGTCGAATCGGACTGTTGGCTTTTT
TTAGGTCCACGGCGGGGTCGCTTTTTTTTTTCTCCCTTTGTGGTGTTGCT
GTTATGTCCCAAGTACTTTCTTGTTTGCTACATGTTTTTTATCGAGAAGG
CGTGGTTCGAGATATGGGGGGAATTATCCCGCAGCTCTTGCCTCCCCCTC
CTTCTCTCTTCCCCTCCCCTCTCCTACCGCTATCCGCCGCCCCCCTTGCG
CATTTATCGACCCCCGCTTTTACAGCGGAACACCTAATTTCTTGCTATGG
CAGAAGACGGACGATTTTCCGTACGATAACTAGGTAGATGGTGTTTTTGT
TACGAAAAGAAGAAGAAAGGATTTTGCAGATAGCAACGCAAAATCGATCT
CTCGTGTGTAATGGTCGAATCGGACTGTTGGCTTTTTTTAGGTCCACGGC
GGGGTCGCTTTTTTTTTTCTCCCTTTGTGGTGTTGCTGTTATGTCCCAAG
TACTTTCTTGTTTGCTACATGTTTTTTATCGAGAAGGCGTGGTTCGAGAT
ATGGGGGGAATTATCCCGCAGCTCTTGCCTCCCCCTCCTTCTCTCTTCCC
CTCCCCTCTCCTACCGCTATCCGCCGCCCCCCTTGCGCATTTATCGACCC
CCGCTTTTACAGCGGAACACCTAATTTCTTGCTATGGCAGAAGACGGACG
ATTTTCCGTACGATAACTAGGTAG
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