mRNA_H-paniculata_contig9380.17150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9380.17150.1
Unique NamemRNA_H-paniculata_contig9380.17150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9380.17150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9380contigH-paniculata_contig9380:236..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.5744069-CDS-H-paniculata_contig9380:235..2671622931166.5744069-CDS-H-paniculata_contig9380:235..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9380 236..267 -
1691481620.2800908-CDS-H-paniculata_contig9380:235..2671691481620.2800908-CDS-H-paniculata_contig9380:235..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9380 236..267 -
1622931166.5916924-CDS-H-paniculata_contig9380:284..4321622931166.5916924-CDS-H-paniculata_contig9380:284..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9380 285..432 -
1691481620.289521-CDS-H-paniculata_contig9380:284..4321691481620.289521-CDS-H-paniculata_contig9380:284..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9380 285..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9380.17150.1prot_H-paniculata_contig9380.17150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9380 236..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9380.17150.1

>prot_H-paniculata_contig9380.17150.1 ID=prot_H-paniculata_contig9380.17150.1|Name=mRNA_H-paniculata_contig9380.17150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
DTSDDVVESFEVRKLIWFGNSSPPCSISPSSTAGCPVHRTRGIPLPKNSM
FWIGRPGLPL
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mRNA from alignment at H-paniculata_contig9380:236..432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9380.17150.1 ID=mRNA_H-paniculata_contig9380.17150.1|Name=mRNA_H-paniculata_contig9380.17150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=197bp|location=Sequence derived from alignment at H-paniculata_contig9380:236..432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACGTCAGACGATGTGGTAGAGTCGTTTGAAGTTCGCAAGTTGATTTG
GTTCGGCAACTCATCACCGCCCTGCTCCATCTCGCCTTCTTCGACCGCAG
GTTGTCCTGTACATCGAACACGGGGAATCCCCCTCCCTAAGAACAGCAGT
GGAGTCGGTCAGCAGTGTTTTGGATTGGCCGTCCAGGTTTGCCGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig9380:236..432-

>mRNA_H-paniculata_contig9380.17150.1 ID=mRNA_H-paniculata_contig9380.17150.1|Name=mRNA_H-paniculata_contig9380.17150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig9380:236..432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACGTCAGACGATGTGGTAGAGTCGTTTGAAGTTCGCAAGTTGATTTG
GTTCGGCAACTCATCACCGCCCTGCTCCATCTCGCCTTCTTCGACCGCAG
GTTGTCCTGTACATCGAACACGGGGAATCCCCCTCCCTAAGAACAGCAGA
CACGTCAGACGATGTGGTAGAGTCGTTTGAAGTTCGCAAGTTGATTTGGT
TCGGCAACTCATCACCGCCCTGCTCCATCTCGCCTTCTTCGACCGCAGGT
TGTCCTGTACATCGAACACGGGGAATCCCCCTCCCTAAGAACAGCATGTT
TTGGATTGGCCGTCCAGGTTTGCCGCTGTGTTTTGGATTGGCCGTCCAGG
TTTGCCGCTG
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