mRNA_H-paniculata_contig9362.17136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9362.17136.1
Unique NamemRNA_H-paniculata_contig9362.17136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5JGF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF6_9PHAE)

HSP 1 Score: 832 bits (2150), Expect = 6.420e-271
Identity = 465/907 (51.27%), Postives = 594/907 (65.49%), Query Frame = 2
Query: 3560 KEMPEMENIEERPST*GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA--WFGLSFIGDCIFGVGI*LC-------VPIDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTPETLHSDQVAEFENQLVEELQSVFGYK-TRTSACRPQGNSVQERMHSTVHNMMAMYSSVAFYIWADLLPFIQLVHNTSYSFMFTKPLTTFCSVVRPYYRLM---PFLASRNF----RTSNPA*LHAGYRREIVASL*VGAP*SQR----AADKQPEDNRQLSVPSFVVGDRGLLHRPPSESGGPDPKLASPWRGPYTVQTQMSPVTYRVSKNCEHTATTVHLGQMKP 6205
            ++M E    E+RPS  GSPC IVAK+NGSPRFC+DY HTLNR I+RK+ P+ N+++CLDAVG A ++T+AD++SAFWQ+PVA+  VD  AFVTH  KY F R    ++NA WLFQH M + LGHLGP+SG+L Y++ L+C++  FE +L S+E+MFAALQ A LTLKPSK++FG KE+ YLGHVISA GI V   R+ +I D+  P+ +K+L S+LGM NFVRRF K YA++TAPLV L  KDF   R  ++AWG  QD AF + K  L SA +LHFP FSREFVV+TDA E  V +FLAQP+ + +    +D+VAYYS RF   QRHYS T+KEC+A  W  L+     ++G  I  C         + H+QDTS ML RW+I  Q+F FTVKH+PGKLNVVPD LSR+FSE + G+ +P EPRLAAICRNV  DQ   P AP EYEVS   L+DIVPV++ R+ FSSA+SVFPV DTA++   ++ EF  +F YL +P  + +P  + K + + FF++EG                  DQLVVP +LR  VI   HD P+SGGHLAFK                                           GHRPVT  F  +AVDLVE KS+  GNRF+LSVIDHL RF++LI I  KE T   RH ++ VFS+ G PETLHSDQ  EFENQLV+ELQ+VFGYK TRT+A RPQGNSV ER+H+TVHNM+AMYS++A  IW++LLPF+QL HNT+YS    +          P+Y +    P L    F     T  P      + R  V +L +    ++R      DKQ  +N +LS PSF +GD+ LLHRP +E+ GP+PKL SPW GP+TV++Q+SPV YRVSK  + T  TVHLG+MKP
Sbjct:   43 EDMLEWGITEKRPSPWGSPCTIVAKSNGSPRFCIDYRHTLNRNIIRKTCPMPNLESCLDAVGDALYITVADILSAFWQIPVAEEHVDRTAFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLLYMDNLICINRTFETHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGIFVSTDRIDAIRDVSTPKCIKDLRSILGMANFVRRFAKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALYSALVLHFPDFSREFVVHTDASELGVGAFLAQPSKDSTGDKAVDIVAYYSKRFKAGQRHYSPTMKECTAVVW-ALTHWRPYLWGRQI-TCHTDHQALTYLYHMQDTSNMLTRWAICLQNFDFTVKHVPGKLNVVPDTLSRIFSE-IDGKPLPYEPRLAAICRNVPDDQPFRPPAPREYEVSASNLDDIVPVDTERELFSSAMSVFPVFDTAKLLDHQKKEFHQYFDYLDNPTKARVPLHQPKSSMSKFFIHEGEAL---------------DQLVVPDTLRKLVINVCHDLPASGGHLAFK-------------------------------------------GHRPVTNPFQVVAVDLVEYKSQSEGNRFILSVIDHLTRFLILIPIPSKEATVVVRHLIDRVFSVLGPPETLHSDQGREFENQLVKELQTVFGYKKTRTAAYRPQGNSVLERVHNTVHNMLAMYSNLACDIWSELLPFVQLAHNTAYSKTLEET---------PHYLVFGRAPTLPVELFLGVPATDAPQ-SRLDHSRRTVENLQLAYELARRNLKERTDKQAVENEKLSFPSFKMGDQVLLHRPYNETDGPNPKLVSPWHGPFTVRSQISPVIYRVSKPNDPTEVTVHLGRMKP 878          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 767 bits (1981), Expect = 7.530e-243
Identity = 462/990 (46.67%), Postives = 573/990 (57.88%), Query Frame = 2
Query: 3563 EMPEMENIEERPST*GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA-------W----FGLSFI---------------------------------------------------------GDCIFG----VGI*LCVPID----------------------HIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTPETLHSDQVAEFENQLVEELQSVFGYK-TRTSACRPQGNSVQERMHSTVHNMMAMYSSVAFYIWADLLPFIQLVHNTSYSFMFTKPLTTFCSVVRPYYRLMPFLASRNFRT-----SNPA*L-HAGYRREIVASL*VGAP*SQR----AADKQPEDNRQLSVPSFVVGDRGLLHRPPSESGGPDPKLASPWRGPYTVQTQMSPVTYRVSKNCEHTATTVHLGQMKP 6205
            EM E   IE+RPS  GSPC +VAK NGSPRFCVDY HTLNR+IVRK+WP+ N+++CLDAVG A ++T+AD++SAFWQ+PVA+  VD  AFVT   KY F R    ++NA WLFQH M + LGHLGP+SG+L Y++ L+C++  FEA+L SLE+MFAALQ A LTLKPSK++FG KE+ YLGHVISA GISV   R+ +I +LP P  +K+L SVLGM                                                RVL S P+LHFP FSREFVV+TDA E  V +FLAQP+ + +   +LD+VA+YS RFSK QRHYSAT+KEC A       W    +G  F                                                          GD +        I   VP D                      H+QDTS ML RW+I  Q++ FTVKH+PGKLNVVPDALSR+FSE ++G+ VPSEPRLAAICRNV  D+   P  P +YEVS + L++   VES R+ FSSAVSVFPV D+ ++   ++ EF  +F YL  P  SP+PS +SK + + FFL+EG+L RSY+P  LR+R+ F D LV+P SLR  VI+S HD PSSGGHLAFK                                                         DLVE KS   GNR++LSVIDHL RFV+LI IK KE T   R+ V+ VFS+FG PETLHSDQ  EFEN+LV+ELQSVFGYK TRT+A RPQGNSV ER+HSTVHNM AMY ++A   W++LLPF+QL HNT+YS       TT      P+Y +    A           S PA      Y R  V +L +    ++R     + KQ + N +LS PSF  GD+ L+HRP +ES GP+PKL SPW GPYTV+ Q+SPV YRVSK  E T TTVHLG+MKP
Sbjct:  195 EMLEWGIIEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGM------------------------------------------------RVLSSTPVLHFPDFSREFVVHTDASEQGVGAFLAQPSRDSADGKELDIVAFYSKRFSKGQRHYSATMKECIAVVWALTHWRPYLWGRHFTCSTDHQALTYLYHMQDTSNMLTRWAIALQNYDFTVKHMPGKLNVVPDALSRFFSEVNGDHVPSEPRLAAICRNVPDDKPFCPLSLAITNTDHQALTYLYHMQDTSNMLTRWAIALQNYDFTVKHVPGKLNVVPDALSRIFSE-VNGDHVPSEPRLAAICRNVPDDKPFCPPVPRDYEVSSYNLDETALVESDRELFSSAVSVFPVVDSVKLLDHQKREFRQYFDYLASPAKSPVPSNQSKSSMSKFFLHEGLLCRSYIPAHLRRRAHFRDPLVLPSSLRTLVISSCHDLPSSGGHLAFK---------------------------------------------------------DLVEYKSLSEGNRYILSVIDHLTRFVILIPIKSKEATVVVRNLVDRVFSVFGPPETLHSDQGKEFENRLVKELQSVFGYKKTRTAAYRPQGNSVLERVHSTVHNMFAMYRNLACDNWSELLPFVQLAHNTAYS-------TTLQET--PHYLMFGRAAKLPVDLILGVPSTPAPQSRLDYSRRTVENLQLAYELARRNLKERSSKQADANEKLSFPSFKFGDQVLVHRPYTESAGPNPKLISPWHGPYTVRAQLSPVIYRVSKPNEPTETTVHLGRMKP 1069          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE)

HSP 1 Score: 691 bits (1782), Expect = 1.320e-222
Identity = 354/606 (58.42%), Postives = 448/606 (73.93%), Query Frame = 2
Query: 3716 NMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA--WFGLSFIGDCIFGVGI*LCVP------IDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIK 5497
            N+++CLDAVG A ++T+AD++SAFWQ+PVA+  VD  AFVT   KY F R    ++NA WLFQH M + LGHLGP+SG+L Y++ L+C++  FEA+L SLE+MFAALQ A LTLKPSK++FG KE+ YLGHVISA GISV   R+ +I +LP P  +K+L SVLGMVNFVRR IK+YA++TAPLV L  KD+  +   +KAWG  QD AF+  KRVL S P+LHFP FSREFVV+TDA E  V +FLAQP+ + +   +LD+VA+YS RFSK QRHYSAT+KEC A  W  L+     ++G              + H+QDTS ML RW+I  Q++ FTVKH+PGKLNVVPDALSR+FSE ++G+ VPSEPRLAAICRNV  D+   P  P +YEVS + L++   VES R+ FSSAVSVFPV D+ ++   ++ EF  +F YL  P  SP+PS +SK + + FFL+EG+L RSY+P  LR+R+ F DQLVVP SLR  VI+S HD PSSGGHLAFK TFDK+R  YWWPTM++DI++HV+SC+SCQR   S   P LPVGHRPVT+ F C+AVDLVE KS   GNR++LSVIDHL RFV+LI IK
Sbjct:    3 NLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRAIKDYADVTAPLVELTRKDYVKRASFKKAWGSAQDAAFENVKRVLSSTPVLHFPDFSREFVVHTDASEQGVGAFLAQPSRDSADGKELDIVAFYSKRFSKGQRHYSATMKECIAVVW-ALTHWRPYLWGRHFTCSTDHQALTYLYHMQDTSNMLTRWAIALQNYDFTVKHVPGKLNVVPDALSRIFSE-VNGDHVPSEPRLAAICRNVPDDKPFCPPVPRDYEVSSYNLDETALVESDRELFSSAVSVFPVVDSVKLLDHQKREFRQYFDYLASPAKSPVPSNQSKSSMSKFFLHEGLLCRSYIPAHLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLAFKGTFDKVRDRYWWPTMHSDITRHVQSCESCQRRKTSYRPPQLPVGHRPVTQPFQCVAVDLVEYKSLSEGNRYILSVIDHLTRFVILIPIK 606          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5JU37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU37_9PHAE)

HSP 1 Score: 653 bits (1684), Expect = 1.710e-204
Identity = 376/861 (43.67%), Postives = 531/861 (61.67%), Query Frame = 2
Query: 3719 MDACLDAVGGASFLTIADVISAFWQLPVA-KNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSAW-FGLSFIGDCIFGVGI*LCVPIDH--------IQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPE-YEVSVHTLNDIVPVESYRDFFS-SAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGN-----RFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTPETLHSDQVAEFENQLVEELQSVFGY-KTRTSACRPQGNSVQERMHSTVHNMMAMYSSVAFYIWADLLPFIQLVHNTSYS---------FMFTKPLTTFCSVVRPYYRLMPFLASRNFRTSNPA*LHAGYR--REIVASL*VGAP*SQRAADKQPEDNRQLSVPSFVVGDRGLLHRPPSESGGPDPKLASPWRGPYTVQTQMSPVTYRVSKNCEHTATTVHLGQMK 6202
            M++ +D V GA ++T+ D+ SAF QLP+  +++ D  AFVT   K++F R    I+NA +LFQ TM +   H GP+SG+L Y++ L+C S+ +E +L  LE  F ALQ A LTLKPSK++FGPKE+ YLGH++S+DGI +G  R+Q+I DLP P ++KEL SVLGMVN+VR+FI + A   AP+V L  K+ ++K +  K WG   D AF + K++L  AP+LHFP FS+EFV++ DA E    +FLAQ         DL+++AY+S RF+KSQRHYSAT+KEC A    +      ++G     CV  DH        +QDTS ML RW+I  QSF F+V+H PGKLNVVPD LSRLF  E   E   + P LA ICRNV  D       P   Y++    L+++ PV S R+ F+ SA  VF   +  ++  ++ DE+  +  Y+   +++PLP +E++ T +++ L +G+LF+SYLPG LRKRS F DQ+V+P  L   V+ ++HD   SGGHLAF+ T++KIR  YWWP+M  D+      CQ+CQR       P LP GH PV + F  ++VDLVE K+  + +     ++VLS++DHL RF VL  I +K   T A   +E + SIFG PE LHSDQ  EFEN+++ +LQSV GY KTRT+  RPQGNSV ER+HST+H M++M+SS+    WA+LLP +QL +NTS++          MF +       V+     +     +  F  +    L   Y   R+ +         S+RAA +   +++    P F  G + LL++P  +S GP+PKL  PWRGPYT+ +Q+SPV YRV +  E    +VHL  +K
Sbjct:    4 MESHIDTVAGAKYITVCDIQSAFHQLPINDRHEQDKTAFVTRNGKWVFKRLPFGIANAPFLFQRTMALAFAHFGPKSGLLVYMDDLICCSSTWEGHLTLLENTFKALQAAGLTLKPSKVQFGPKEVKYLGHILSSDGIRLGDDRIQAILDLPTPTNIKELRSVLGMVNYVRKFIPDLATTIAPMVDLTKKE-SLKSIA-KLWGPEHDAAFAKVKKLLTEAPVLHFPDFSKEFVIHVDASETGAGAFLAQ-----RNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRHF-TCVT-DHAALRYLYTMQDTSNMLTRWAIALQSFDFSVQHKPGKLNVVPDTLSRLFVFEKDQER--NTPTLAPICRNVPDDPKLQTAVPTRPYQLDADQLHNVRPVHSDRELFTVSATEVFQSVNHDKLREKQMDEYGDYIKYILH-ENAPLPDRETETTMSYYSLQDGLLFKSYLPGHLRKRSTFIDQIVLPQDLTGLVMHAYHDHALSGGHLAFRPTYEKIRQKYWWPSMSRDVRNWCLECQACQRRKTPHRRPKLPTGHVPVQQPFERISVDLVEYKTLSKSHTGVYCKYVLSMMDHLTRFAVLTPIPNKSAETVANVLIEKIISIFGPPEMLHSDQGTEFENKIIHQLQSVLGYQKTRTTPYRPQGNSVSERVHSTMHAMLSMHSSMERDNWAELLPMVQLAYNTSFNKTMHETPFFLMFGRQARLPVDVILGIPHVGSSADTEVFTKTTRENLQTAYELARQNL---------SERAAKQAAHNDKLPQFPVFQPGQQVLLYKPYHDSDGPNPKLLLPWRGPYTICSQLSPVVYRVKRPNETRELSVHLAHLK 843          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5JXY7_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY7_9PHAE)

HSP 1 Score: 553 bits (1425), Expect = 8.730e-170
Identity = 312/655 (47.63%), Postives = 390/655 (59.54%), Query Frame = 2
Query: 3563 EMPEMENIEERPST*GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLRISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA-------WFGLSFIGDCIFGVGI*LCVPIDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIKDKE 5506
            EM E   IE+R S  G PC +VAK NGSPRFCVDY HTLNR+IVRK+WP+ N+++CLDAVG A ++T+AD++SAFWQ+PVA+  VD  AFVT   KY F R                                                         LTLK SK++F  KE+ YLGHVISA GISV   R+ +I +LP P  +K+L SVLGMVNFVRRFIK+YA++TA LV L  KD+  +   +KAWG  QD AF   KRVL S P+LHFP FSREF V+TDA E  V +FLAQP+ +     +L++VA+YS RFSK QRHYS+T+KEC A       W    +      G        + H+QDTS ML RW+I  QS+ FT+KH+PGKLNVVPDALSR+FS+ ++G+ VPSEPR AAICRNV  D+   P  P +YEVS + L++   VES R+ FSSAVSVFPV D+ ++   ++ EF  +F YL  P  SP+PS +SK + + FFL+EG+L RSY+P  LR+R+ F DQLVVP SLR  VI+S HD PSSGGHLAFKA                                                       VDLVE KS   GN ++LSVIDHL RFV+LI IK K+
Sbjct:  196 EMLEWGIIEKRTSAWGRPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKR---------------------------------------------------------LTLKSSKIQFSQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRFIKDYADVTASLVELTRKDYVKRASFKKAWGSAQDAAFQNVKRVLSSTPVLHFPDFSREFAVHTDASEQGVGAFLAQPSHDIDDGKELNIVAFYSKRFSKGQRHYSSTMKECIAVVWALTHWRPYLWGRHFSCGTDHQALTYLYHMQDTSNMLTRWAIALQSYDFTIKHVPGKLNVVPDALSRIFSK-VNGDHVPSEPRFAAICRNVPDDKPFCPPVPRDYEVSSYNLDETALVESDRELFSSAVSVFPVVDSVKLLDHQKREFRQYFDYLASPAKSPVPSNQSKSSMSKFFLHEGLLCRSYIPAHLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLAFKA-------------------------------------------------------VDLVEYKSLSEGNPYILSVIDHLTRFVILIPIKSKD 737          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5JK17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK17_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 1.900e-153
Identity = 306/716 (42.74%), Postives = 386/716 (53.91%), Query Frame = 2
Query: 3566 MPEMENIEERPST*GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA--WFGLSFIGDCIFGVGI*LC-------VPIDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTPETLHSDQVAEFENQLVEELQSVFGYK-TRTSACRPQG 5671
            M E   IE+RPS  G PC ++AK NGSPRFCVDY HTLNR+IVRK+WP+ ++++CLDAVG A ++ +AD++SAFWQ+PVA+  VD  AFVT   KY   R    ++NA WLFQH M + LGHLGP+SG+L Y++ L+C++  FEA+L SLE+MFAALQ A LTLKPSK++FG KE+ YLGHVI A  ISV   R+ +I +LP P  +K+L S              YA++TAPLV L  KD+  +    + WG  QD AF+  KRVL S P+LH P FSRE VV+TDA E  V +FLAQP+ + +   + D+VA+YS RFSK Q HYSAT+KEC A  W  L+     ++G     C         + H+QDTS ML RW+I  Q++ FTVKH+P KLNVVPDALSR+FSE ++G  V SEPRLAAICRNV  D    P  P +YEVS H L++   VES R+                                                                                                                                                               L+VDLVE KS   GNR++LSVIDHL RFV+LI IK ++     R+ V+ VFS+FG P+TLHSDQ  EFENQLV+ELQS FGYK TRT A RPQG
Sbjct:   46 MLEWGIIEKRPSAWGRPCTLIAKKNGSPRFCVDYRHTLNRHIVRKTWPMPDLESCLDAVGQALYIIVADILSAFWQIPVAEEHVDRTAFVTPTGKYCLKRMPFGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVIPAKDISVTTDRIDAIRNLPTPTCIKDLRS--------------YADVTAPLVELTRKDYVKRASLIEEWGPAQDAAFENVKRVLSSIPVLHLPDFSRELVVHTDASEQGVGAFLAQPSRDSADGKEFDIVAFYSKRFSKGQHHYSATMKECIAVVW-ALTHWRPYLWGRHF-TCSTDHQALTSLYHMQDTSNMLTRWAIALQNYDFTVKHVPWKLNVVPDALSRVFSE-VNGNPVLSEPRLAAICRNVPDDTPFCPPVPRDYEVSSHNLDETAFVESDRE---------------------------------------------------------------------------------------------------------------------------------------------------------------LSVDLVEYKSLSEGNRYILSVIDHLTRFVILIPIKSEKAVVVVRNLVDRVFSVFGPPDTLHSDQGKEFENQLVKELQSAFGYKKTRTVAYRPQG 585          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5K153_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K153_9PHAE)

HSP 1 Score: 496 bits (1278), Expect = 1.570e-151
Identity = 265/532 (49.81%), Postives = 359/532 (67.48%), Query Frame = 2
Query: 3560 KEMPEMENIEERPST*GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPA-CNPSKLGDLDVVAYYSHRFSKSQRHYSATVKEC-SAWFGLSFIGDCIFGVGI*LCVPIDH--------IQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPG 5113
            K+M + + IEE PS  GSP  +VA+ +G PRFCVD+  T+N++++RK+WPL NM++ LD+VG A F+++ADV SA+WQ+PV  + V+  AFVT+  KY + R    + NA W+F       LGH+ PE  +L Y++    LSA FE +++SLE MF ALQ A LTLKPSK+ FGPK + YLGH+ISA+GISVGK R++++ +LP P+ LK+L SVLG+VNFVRRFI +YAEIT PLV L  K++  K    KAW    D +F   KR+L SAP+LHFP F REFVV+ DA E    +FLAQP+  +P  L   D++AYYSHRF   QRHYSA++KEC      +S     +FG      V  DH        +QDTS ML RW+I  Q++ FTVKH+ GKLNVVPD LSRLF E +  E +  +P LA+ICRNV  D+   P  P +YE+S  +LND+  V +  + F+SAVS+FPV D A++   +  EF  +  Y++ P+++PLPS E+K T +++FLNE +LFRSYLPG
Sbjct:  130 KDMLDDDIIEELPSQWGSPVTLVARKDGKPRFCVDFRSTVNKHLIRKTWPLANMESNLDSVGSAKFISVADVQSAYWQIPVHPDHVERTAFVTNSGKYCYKRMPFGVCNAPWIFTEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMKSLESMFVALQAAGLTLKPSKISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQPSKADPESL---DMIAYYSHRFKHGQRHYSASMKECCGVVLAISHWRPYLFGKHF--TVITDHQALTHLFYMQDTSNMLTRWAIALQNYDFTVKHVAGKLNVVPDTLSRLFGE-IESETISHKPALASICRNVPSDRPYHPPGPRDYEISADSLNDVDIVHNDNELFASAVSLFPVLDPAKLRREQYKEFGPYIDYVKKPKTAPLPSSENKGTMSNYFLNENVLFRSYLPG 652          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5KUM8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM8_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 2.710e-148
Identity = 283/635 (44.57%), Postives = 388/635 (61.10%), Query Frame = 2
Query: 3959 LVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSAW-FGLSFIGDCIFGVGI*LCVPIDH--------IQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPE-YEVSVHTLNDIVPVESYRDFFS------SAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGN-----RFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTPETLHSDQVAEFENQLVEELQSVFGYK-TRTSACRPQGNSVQERMHSTVHNMMAMYSSVAFYIWADLLPFIQLVHNTSYS 5797
            ++C S+ +E +++ LE+ F AL+ A LTLKPSK++FGPKE+ YLGHV+S+DGI +G  R+++I DLP P+++KEL SVLG VN+V+RFI + A ITAPLV L  KD  +K + ++ WG   D+AF   K +L  AP+LHFP FS+EFVV+ DA EA   +FLAQ         DL+++AY+S RF+KSQ+HYSAT+KEC A    +      ++G     CV  DH        +QDTS ML RWSI  QSF FT            D L+                 LA ICRNV  D       P   ++VS + L+ + PV S R+ F+      SA  VF   D   +   +  E+  +  Y+ D + +PLP  E+  T +++ +  G+LF+SYLPG LRKRS FHDQLV+P  L   V+ ++HD   SGGHLA + T+ KIR  YWWPTM  DI      CQ+CQR       P LP GH PV R F  ++VDLVE K+          ++VLS++DHL R+ +L  I +K   T A+  ++ + S FG PE LHSDQ  EFEN+++ +LQ++ GYK T T+  RPQGNSV ER+HST+H+M+AM+SS+    WA+LLP +QL +NTS+S
Sbjct:    4 IICCSSTWEGHIDLLEKTFEALKAAGLTLKPSKVQFGPKEVKYLGHVLSSDGIRLGDDRIKAILDLPTPKTIKELRSVLGTVNYVKRFIPDLATITAPLVDLTKKDA-VKHVARR-WGPEHDQAFAEVKNLLTKAPVLHFPDFSKEFVVHVDASEAGAGAFLAQ-----QNGDDLNIIAYFSQRFNKSQQHYSATMKECYAVVLAIQHWRPYLWGKHF-TCVT-DHAALRYLYTMQDTSNMLTRWSIGLQSFDFT------------DRLTH---------------SLAPICRNVPDDPKLHTSIPSRPFQVSPNKLDSVQPVLSDRELFNVEPNFVSAAEVFQSVDHDMLCKAQAKEYGDYIQYILD-EEAPLPQTETATTMSYYSIQNGLLFKSYLPGHLRKRSTFHDQLVLPQDLTGLVMHAYHDHALSGGHLADRPTYAKIRQKYWWPTMARDIRNWCRKCQACQRRKTPHRRPKLPTGHLPVQRPFERISVDLVEYKTISMSAVGAPCKYVLSMMDHLTRYAILTPIPNKTAETVAKVIIDRIISTFGPPEMLHSDQGTEFENKVIHQLQTILGYKKTCTTPYRPQGNSVSERVHSTMHSMLAMHSSMGRDNWAELLPMVQLAYNTSFS 601          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5J8C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8C1_9PHAE)

HSP 1 Score: 467 bits (1201), Expect = 1.240e-142
Identity = 278/600 (46.33%), Postives = 349/600 (58.17%), Query Frame = 2
Query: 3959 LVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSA---------------------------------------------------------PLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA--WFGLSFIGDCIFGVGI*LCVP------IDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVGDTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRSYLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*PSSGGHLAFKATFDKIRVGYWWPTMYADISKHVESCQSCQR*NMSRCTPHLPVGHRPVTRVF*CLAVDLVERKSRLRGNRFVLSVIDHLIRFVVLIAIKDKEETTNARHPVEHVFSIFGTP 5563
            L+C++  FEA+L SLE+MFAALQ A LTLKPSK++FG KE+ YLGHVISA GISV   R+ +I +LP P  +K+L SVLGMVNFVRRFIK+YA++TAPLV L  K+   +   +KAWG  QD AF+  KRVL S                                                          P+LHFP FSREFVV+TDA E  V +FLAQP+ +     +LD+VA+YS RFSK Q HYSAT+KE  A  W  L+     ++G              + H+QDTS ML RW+I  Q++ FTVKH+PGKLNVVPDALSR+FSE ++G+ VPSEPRLAAICRNV  D+   P  P +YEVS + L++   VES R+ FSSAVSVFPV D+ ++   ++ EF  +F YL  P  SP+P  +SK + + FFL+EG+L RSY+   LR+R+ F DQLVVP SLR  VI+S HD PSSGGHL FKA                                                       VDLVE KS   GNR++LSVIDHL RFV+LI IK K+ T   R+ V+ VFS+FG P
Sbjct:    4 LICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRFIKDYADVTAPLVELTRKNCIKRASFRKAWGSAQDAAFENVKRVLSSPVLHFPVFSREFVVHTDASEQGVGAFLAQPSRDIDDGNELDIVAFYSKRFSKGQGHYXPVLHFPDFSREFVVHTDASEQGVGAFLAQPSRDIDDGNELDIVAFYSKRFSKGQGHYSATMKEFIAVVW-ALTHWRLYLWGRHFTCSTDHQALTYLYHMQDTSNMLTRWAIALQNYDFTVKHVPGKLNVVPDALSRIFSE-VNGDHVPSEPRLAAICRNVPDDKPFCPPVPRDYEVSSYNLDETALVESDRELFSSAVSVFPVVDSVKLLDHQKREFRQYFDYLASPAKSPVPPNQSKSSMSKFFLHEGLLCRSYIAAHLRRRAHFRDQLVVPSSLRTLVISSCHDLPSSGGHLTFKA-------------------------------------------------------VDLVEYKSLSEGNRYILSVIDHLTRFVILIPIKSKDATVTVRNLVDRVFSVFGPP 546          
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Match: A0A6H5K047_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K047_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 5.020e-139
Identity = 237/417 (56.83%), Postives = 301/417 (72.18%), Query Frame = 2
Query: 3608 GSPCCIVAKNNGSPRFCVDYWHTLNRYIVRKSWPLLNMDACLDAVGGASFLTIADVISAFWQLPVAKNDVDSMAFVTHREKYIFLR----ISNALWLFQHTM*MILGHLGPESGILCYINYLVCLSAIFEANLESLEQMFAALQDAELTLKPSKLRFGPKEMAYLGHVISADGISVGKRRVQSINDLPKPQSLKELLSVLGMVNFVRRFIKEYAEITAPLVALMLKDFNMKRLCQKAWG*GQDEAFDRTKRVLQSAPLLHFPGFSREFVVYTDAFEADVCSFLAQPACNPSKLGDLDVVAYYSHRFSKSQRHYSATVKECSA--WFGLSFIGDCIFGVGI*LC-------VPIDHIQDTSKMLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLAAICRNV 4819
            G P     K+NGSPRFCVDY HTLNR I+RK+ PL N+++CL AVG A ++T+AD++SAFWQ+PVA+  VD  AFVTH  KY F R    ++NA WLFQH M + LGHLGP+SG+L Y++ L+C++  F+ +L S+E+MFAALQ A LTLKPSK++FG KE+ YLGHVISA GISV   R+ +I DL  P+ +K+L S+LGM NFVRRF+K YA++TAPLV L  KDF   R  ++AWG  QD AF + K  L SAP+LHFP FSREFVV+TDA E  V +F AQP+ + +    +D+VAYYS RF   QRHYS T+KEC+A  W  L+     ++G  I  C         + H+QDTS ML RW+I  Q+F FTVKH+PGKLNVVPD LSR+FSE + G+ +PSEPRLAAICRNV
Sbjct:    2 GEPLYHCRKSNGSPRFCVDYRHTLNRNIIRKTSPLPNLESCLVAVGDALYITVADILSAFWQIPVAEEHVDRTAFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFKTHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGISVSTDRIDAIRDLSTPKCIKDLRSILGMANFVRRFVKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALSSAPVLHFPDFSREFVVHTDASELGVGAFPAQPSKDSTDDKVVDIVAYYSKRFKAGQRHYSPTMKECTAVVW-ALTHWRPYLWGRQI-TCHTDHQALTYLYHMQDTSNMLTRWAICLQNFDFTVKHVPGKLNVVPDTLSRIFSE-IDGKPLPSEPRLAAICRNV 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9362.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGF6_9PHAE6.420e-27151.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K112_9PHAE7.530e-24346.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LN90_9PHAE1.320e-22258.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU37_9PHAE1.710e-20443.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXY7_9PHAE8.730e-17047.63RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JK17_9PHAE1.900e-15342.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K153_9PHAE1.570e-15149.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUM8_9PHAE2.710e-14844.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8C1_9PHAE1.240e-14246.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K047_9PHAE5.020e-13956.83Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9362contigH-paniculata_contig9362:2..7380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size7357
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9362.17136.1prot_H-paniculata_contig9362.17136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9362 2159..2707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.7917933-UTR-H-paniculata_contig9362:1..21581622931164.7917933-UTR-H-paniculata_contig9362:1..2158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 2..2158 -
1691481619.5523682-UTR-H-paniculata_contig9362:1..21581691481619.5523682-UTR-H-paniculata_contig9362:1..2158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 2..2158 -
1622931164.8350358-UTR-H-paniculata_contig9362:2707..60141622931164.8350358-UTR-H-paniculata_contig9362:2707..6014Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 2708..6014 -
1691481619.5802562-UTR-H-paniculata_contig9362:2707..60141691481619.5802562-UTR-H-paniculata_contig9362:2707..6014Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 2708..6014 -
1622931164.8547976-UTR-H-paniculata_contig9362:6036..73801622931164.8547976-UTR-H-paniculata_contig9362:6036..7380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 6037..7380 -
1691481619.5987568-UTR-H-paniculata_contig9362:6036..73801691481619.5987568-UTR-H-paniculata_contig9362:6036..7380Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9362 6037..7380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.8155773-CDS-H-paniculata_contig9362:2158..27071622931164.8155773-CDS-H-paniculata_contig9362:2158..2707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9362 2159..2707 -
1691481619.5659702-CDS-H-paniculata_contig9362:2158..27071691481619.5659702-CDS-H-paniculata_contig9362:2158..2707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9362 2159..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9362.17136.1

>prot_H-paniculata_contig9362.17136.1 ID=prot_H-paniculata_contig9362.17136.1|Name=mRNA_H-paniculata_contig9362.17136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MLDRWSIQPQSFGFTVKHLPGKLNVVPDALSRLFSEELHGELVPSEPRLA
AICRNVSHDQWCSPRAPPEYEVSVHTLNDIVPVESYRDFFSSAVSVFPVG
DTAQIAARRQDEFSAHFAYLRDPQSSPLPSKESKYTNNHFFLNEGMLFRS
YLPGPLRKRSDFHDQLVVPGSLRARVITSFHD*
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mRNA from alignment at H-paniculata_contig9362:2..7380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9362.17136.1 ID=mRNA_H-paniculata_contig9362.17136.1|Name=mRNA_H-paniculata_contig9362.17136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7379bp|location=Sequence derived from alignment at H-paniculata_contig9362:2..7380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTCGTCTGTGTTGCTTATCTCCACTTATCCATGTCTGGGTAATATATG ATCTATAAACAAATATGCCTCTCTTGGGTTGCATTGAGGCTGCACAAGCC TACGAAGTACCAAATACACTATTGTTATTACTGGTGACTTCTAGTGCGTG GCGACAAGACAGATAGGGTCGTGATCGGTGGTAAAGCTCCGGTGCCGTTG TCTACGGCTGAGCACGCTGCTCTGCGCTAAAGGGTAGTATGACTGAAGTA CAACATCTGCGACTCCATCGTTCGAGAAGAGACAGTCAGGTGGAGTTATG ATGTTCTCCACTTTAAACTACTCTGAGTCTGCTCCCAAAGAATACGTTGT AACTCGTGGAGAAGAAAGGTTCTTTGGGGGTTTATGTGTCCCACCAGAGG TTTCTGAAGGTGTTCTTCGACGAGATCTACGAAGGCTTTAGTCTACGGGT GAGTTCAATGGCGTGGAAGAGGAAATTGCTCGGATCAAGCGGATCGTGGG TTTGGGTGGGGTCGTCCCCGCTCATGCTGAAGTCGCAATGGCTGAAGAGC GAGGAGTGCCTGTGTCGGTCGGTGTGATGAGCACCACTGCTGTGAAAACC GACAGGTCCATGCCTGTCAATGGCGGATCTATGTCCGTCTATGTCGAAGT CGCTGCTGTCGAAGAGCGAGGAGCACCCGCGGCGAGAGGTGTAATCAACA CTCATGCCGGGGATGTGGGTGAGACGGTTCTTGCCCAAGTTTATGTCGGT GCGGCCGAACAGCCAGGAGTGCCCACGGCGGGCTGGGAAAGGCTCATCGC CGTGGATGAGGACGGTGTGACACCCGTTCTGGAGATGGACACTGTGGTAC TGTAGAGAGAGCTTAACGGTTCAACTTGGGAGCGGGGGTCTTCAGGACCC CTGGAGGAAGAACGGGTGCGCAAGGGCGCAGATGGTGAGCTGTTTGTTTA TCACACGAGTGCTGTTCAGGAGATTCACAGGAGATTGGGGTAAATATCGA GGTAGAGAAGGAAGTTACGCCGAATTGCGGATTCCTTGTGTTCATAGAGA CACTAGTCACGAGTCCGTTGAGGTACCAATACAGACAACAAACCTATCTG TTTGATTGGGGCAATTAGAGCCTGGGGTGTCGAATTGTGTGTCAGTGTTT TGTTCTCCTGTACTGCCTGTGCCCGTGATGACTGCATGTCTGATGTTTCG GATTTCCTGAATTTACACATATTGCATAATATTTTCGCACGGCGACCTGA CTGTTTCGTAGGACGCCTTGGGTAGCGTTCTGCAACACTACTACACCTGC CGGTTGTGCAATTGATGTAGGGTTTTTACTGCCACTGCTCGACAGCATGT CAGACGTACCGATCAGTGTTAAAAATAAGGACACAGCGGATCTGTTTCGG TGATGAATATATTTTCTCTATTATTATTCCGAAATGGCATGGGTATTATG TCCGTGACTGTTTGAAGGTATTCTGTCTTGCTTATTTTGGTTCTTGTCCT GACATGAGTTAGATTTTCTATTGAGGGACAGCAATCCGGCTCTTACAGCT CAAAAGCAAGTTGTTGGTCCATGTAAAACAACGCCAATACCAACTCATGT GATATCATCCATTAGACAGACATATGACGAAATCGTGTCAGACTTTGGTA TTCGCTATCGTGCATTGCTCAACCGGTGAGAGTCTGCAGCCGCTCGTGCA GCCAAATGTTCCGGCATTCAGCGTACAGCGTAGATGGCCTCAACTGTAAC TCTTTCGCAGCATCGTTTGCACCCTAGTCTGAAGGTATTGCAATTACAGG ACAAGCCCGCCTTTGCGTCTCCAAGAAAATCTTGACCGTGCCCGTAGGCA CGAAGTGGCAGGCTCGTCTGGTAACGTTAGCTCACTTCCACGAACCCTAC AACCCAATACGCATGCCGTTGCCCAGTTGGACCGCCAGTCGCCCCGTGGC TCGCGCCACGTTCACCGTGAGCATATCTAGCGTGATAACCGCCGCGGCCA GAAACGTGCCCGTGGCAAACACCCCGCTCCCTCTTCCCCACCCCCTGCCG AACGTTCGTCTTCGCGAGGCTCTGCTGGTGGTACCGCAAAGACACGAGAT CCTTGCACTTTCTCTCGATGTCGCTCTCCCGCGAGCCACACTACGCGAAA CTGCTTTGCGAAGCAGAGAGCCGTTCGGGAAGGCCGTCAAAACAAGGCTT CGACATTGGCCAAATCAGCTGATCAACGCGAAGAGGAGGACGAAGAATGA GGGCGCCCAGCTAGTGGTACGTCTCGTCTAGTTGGGTCACCCTTCTCTAT TGTCCGTACAGTAGATCGTAGAGGTGTCAAGAGGCATGCTGTTTCTTCAT CTGTAGCCGTGCCTGCGCTAGATCGTGCCAATTGCCGGTCTGACTCGCTA CAAAAGAAAGTTCGTTTTGCCGAGGTTTCGTCATTTTATCGTTTCGCAGT TGGTGGCATACCTTCACTCCGTGAGCTTTGTCCGCCGACGCGCGTCGCCA TTCGTCGCGACGCGCACTTCGTATACCCGCGGCTGTAACGTCCACGGTCT GTAGCTTCCGTTCCTCAGACGTGTGCTCAACATAGACTAGCCCTACCGTG CCACTGCTGTTTTCCCACCTTATGGGGCGTGGTACAGCTTTAGTTTGGCA CAGAAACCTCGCTCACTCTCCCTTTCGTCCTCGTCGTGACGTGTGCGGAT TCCTGGTTCAGTCAACATAAATTCCGTAGACACGATCACCGTTGATACCG CTACACATGTTTGTGTCGTATCACTCGCACTGCTAAAATCTAGTTGTTCG TTACGGAATATCGCTTAAAATCCTATTCCCCCCGGCGCTGTCAAGCTGCC ACTCAAAAATCCATTTCAGCTCTTCATCGCCGATCTCAGTCTATGCCCGC TTATAGTCGTTCATCTGACTCTAAGTTTTCAGTCGCTGCAGTACACAGCG ATTCCGATGAAATCCCCGTTCTCTCACGTGAGCGTACATCGTCGAAATCA CGACATGAGGCTGTCGCATTGGCCTACACCGACGTAAAACCGACTGCTGA TTATACTGTCGTTGTCGAGCCGCGTATCGTTACCGATCTTGAATTTTCTA CCTCGAACCGTCGTTACCGCGCTTTTGAAAATATCCCTGTCGTCCGCACG CTAGCCACGTGGTGTGCGGCTGACAGGTCTGTAGCCGTTCAAATATGCAA CCCGTCTTGAGGGAACATACCGTTACCGCAAGGACTTGTCTTAGGTACGT TGTGTACTGTTTCAGTTGGCTCCCCAGAGCAACTACAGGTCAATGCCGTG GTGTCCTCTTCCTGCAGGGCAGCCGACGTGCAAACGGCGAAAGCCGAACT GCGTGAACCACCATCGCCCGCTTTCGTAGATTCTACCTTTATGCCTTAGC AGCAAGCCGCCGTTCTTGACTTGTGCGCTAGGTACCGTCGGGTATATTCG TTGTCTGCGAAAGAGCTTGGTAAATGCACGGTTGCAAAAGCCACTTTTCC TTTGCCCCCGGACGAGCGTTCCATAGACCGTGCTCCGTACAAGATTAACC CCCCTATTCGTGCCGTGATTGATAAGTGCGTAAAGAAATGCCCGAAATGG AGAATATCGAGGAACGTCCTAGCACTTAGGGTTCACCTTGTTGTATCGTT GCGAAAAACAACGGTAGCCCGCGTTTTTGCGTGGACTATTGGCATACTCT TAATCGCTATATTGTACGGAAAAGTTGGCCGCTTCTGAATATGGATGCTT GTTTAGACGCTGTAGGAGGCGCATCGTTTCTTACCATCGCTGACGTCATC AGTGCATTTTGGCAGCTCCCTGTAGCCAAAAATGACGTCGATTCTATGGC TTTCGTTACTCACCGTGAAAAGTACATCTTTCTCCGTATATCCAACGCAC TTTGGTTATTCCAACACACGATGTAGATGATATTGGGTCATTTAGGCCCT GAGTCTGGGATCCTCTGTTACATCAATTACCTCGTCTGCCTTAGCGCTAT TTTTGAAGCGAATCTTGAATCGTTAGAGCAGATGTTTGCAGCATTGCAAG ACGCTGAGCTGACACTGAAGCCTAGCAAACTTCGGTTCGGTCCAAAGGAA ATGGCTTATCTCGGTCATGTCATTTCGGCCGATGGTATTTCCGTTGGAAA ACGTCGTGTACAGTCTATCAATGACCTACCTAAGCCCCAATCTCTCAAAG AGCTTCTTTCCGTCTTGGGTATGGTAAACTTTGTTCGGCGCTTTATCAAA GAATATGCCGAAATCACTGCACCGCTTGTCGCACTTATGCTCAAAGACTT CAATATGAAACGCCTTTGTCAAAAGGCGTGGGGCTAAGGGCAAGATGAAG CTTTCGACCGTACCAAGCGCGTCTTGCAATCCGCACCCTTGTTGCATTTT CCTGGTTTCTCTCGGGAATTCGTCGTGTATACAGACGCATTTGAGGCCGA CGTGTGCTCCTTTCTCGCTCAGCCCGCTTGTAACCCCTCGAAACTTGGAG ATCTTGACGTGGTCGCATACTACAGCCATCGTTTTTCAAAGTCTCAGCGT CACTACAGTGCTACGGTGAAAGAGTGTTCGGCGTGGTTCGGTCTCTCCTT CATTGGAGACTGTATCTTTGGGGTAGGCATTTGACTGTGTGTACCGATCG ACCACATCCAGGACACGTCCAAAATGCTTGACCGTTGGTCGATCCAACCT CAGAGTTTTGGCTTCACCGTCAAGCACTTGCCCGGGAAATTAAACGTTGT TCCCGACGCCCTTTCGCGGTTGTTTAGTGAAGAACTGCATGGAGAACTCG TTCCATCGGAGCCACGGTTGGCTGCTATTTGTCGGAATGTCTCTCATGAT CAATGGTGTTCCCCACGGGCGCCCCCAGAGTATGAAGTGTCCGTTCACAC TTTAAACGATATCGTACCCGTTGAGAGCTACCGTGACTTCTTCTCTAGCG CTGTTTCCGTTTTCCCTGTTGGTGACACTGCACAAATCGCGGCAAGGAGG CAGGATGAGTTTAGCGCACACTTCGCCTACCTGAGAGACCCACAATCGTC ACCTCTCCCATCGAAGGAATCTAAGTATACCAATAATCACTTCTTTTTGA ACGAGGGCATGCTGTTTCGTTCGTATTTGCCTGGACCCCTGCGGAAACGG TCTGACTTCCATGATCAACTGGTTGTCCCCGGCTCCTTGCGCGCCCGTGT CATTACTTCGTTTCATGACTGACCGTCGTCTGGTGGTCATTTGGCTTTCA AAGCCACTTTCGATAAGATTCGAGTTGGTTATTGGTGGCCTACTATGTAC GCTGATATTTCTAAACATGTCGAAAGCTGTCAGTCCTGCCAGCGGTGAAA TATGTCTCGCTGTACGCCGCACTTGCCCGTTGGACATCGTCCCGTTACGC GTGTATTTTGATGTTTGGCAGTTGATTTGGTTGAGCGTAAATCGAGGTTA CGTGGCAACCGATTTGTTTTGTCGGTGATCGATCACCTCATCAGATTTGT CGTGCTGATCGCAATCAAGGACAAGGAGGAGACTACTAATGCTCGTCACC CCGTCGAACACGTATTTTCCATATTTGGTACCCCAGAGACGTTGCACTCA GATCAAGTGGCTGAATTTGAAAACCAGTTGGTCGAAGAGTTGCAGTCAGT GTTCGGCTATAAGACGCGGACTTCCGCGTGCCGACCGCAGGGGAATTCCG TTCAGGAGCGGATGCACAGTACCGTGCACAACATGATGGCCATGTACAGC TCGGTAGCTTTTTACATTTGGGCCGATCTGCTACCGTTTATTCAGTTGGT GCATAACACCTCCTATTCGTTTATGTTCACGAAACCCCTTACTACCTTCT GTTCGGTCGTCCGGCCGTACTACCGGCTGATGCCATTCTTGGCTTCCCGA AACTTCCGAACCTCAAACCCTGCTTGATTACATGCGGGATACCGTCGAGA AATTGTAGCTAGCTTATGAGTTGGGGCGCCGTAATCTCAGAGAGCGGCCG ATAAGCAGCCGGAAGACAACCGTCAACTTTCTGTCCCTAGCTTCGTGGTT GGCGATCGTGGCTTGTTACATCGCCCACCCTCTGAGTCCGGCGGTCCGGA CCCCAAGCTTGCCAGTCCTTGGCGCGGTCCATATACCGTCCAAACACAAA TGTCTCCAGTTACGTATCGTGTTTCCAAAAATTGCGAACACACAGCGACC ACCGTCCATTTGGGTCAGATGAAACCGACCACCCACCGTCGGCTGAAACT CAGCCAGACTTCGACAAGCTTGATGATTTGTTCCTTAGAATTACACTCCC TGTCGCTGACCTTGATGCCTCAGCAGTCAAAGTATTTGGCGCCACGTGAG AGCCGTTCCGCAATGCCGCGGCCTCATCTAGTCCTACTGTTCTCCTGCGT TACTGACGGATATTGCGCCCTTCAATCCCCCACAGCGGAAATCTACCGTT TTTACCGCTGATCGTTGACACCGTTTCATATTTATTTTCGTATGATACGG CTATCCCCACTTCCGGCGTAGGCAACTGCTGATCGTTCCGTTCGGTGTCT TACGGCTATAATCTGCCGTTACCCTGGCTGTACGCAACGCCAGGATGTTC TGTGAAGGTAGTCGGTGCGCGCCGAGTGAGCGGCGACGCTGATGTTCTCC TTCCCATGGTTTTCTTTTCCCGTTACCGTGTCTCTTACCGTGCACAGAGT GCTGAGCTTGTGCTGTTCCACATCTATGTTATTTTTGGCTCAACTCCCAC CGAGGAGCCTGTGGTGATATCGTTTTCTCTTCTACTGTTGTCTGGCAATC TTTGCAAGGATAACTGTTCCTTGTTTCGTACCCATCGTTGATGTCCGCGG TTTCTCTACGGCCTGTTCCCTTCTGTTATACCTTCTGCGTACACCCTTTC ACTCGTCTGTGATCGGAGGGGTGGGATCAAGGGAGCTGTCTCGTGATGGC TACAAAATCAATACCAGATGTCATCACCACAGCCCGTCGGCACCCTTGCC GTGCTTATTTCGTAGTTGGACCGAGTTTTAGGTTGCTCATTGTTTCGTTG GTCGATGGGAAAGGCTTTGTTAGCGCTTGGCGCGTGTATAATTGCATTTG GCGTTTCGCCGAGCCAGCTCCGTTCGCTGGACGCGCTCCGTCCCGCCAGG ATTCCTTCGTTGTAGAGTTAGACTCGCATGCATCCGCTCTCAGCACGCCT AGCATCGCCGACGTTACGTATTTGTATTGTAAATGTTTTACGTTGGGATT TTTCTTTTCCTTTCTCGAGCCAGGTGTGCTCTTGCATAGACCTTGTGTTT CTCGGTCCACTAGAAACAGCATATTGGTGAAATGGGGACCCAAGTTTGAG ATGGGGACCGTGGGTTATATTGGAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9362:2..7380-

>mRNA_H-paniculata_contig9362.17136.1 ID=mRNA_H-paniculata_contig9362.17136.1|Name=mRNA_H-paniculata_contig9362.17136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig9362:2..7380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGACCGTTGGTCGATCCAACCTCAGAGTTTTGGCTTCACCGTCAA
GCACTTGCCCGGGAAATTAAACGTTGTTCCCGACGCCCTTTCGCGGTTGT
TTAGTGAAGAACTGCATGGAGAACTCGTTCCATCGGAGCCACGGTTGGCT
GCTATTTGTCGGAATGTCTCTCATGATCAATGGTGTTCCCCACGGGCGCC
CCCAGAGTATGAAGTGTCCGTTCACACTTTAAACGATATCGTACCCGTTG
AGAGCTACCGTGACTTCTTCTCTAGCGCTGTTTCCGTTTTCCCTGTTGGT
GACACTGCACAAATCGCGGCAAGGAGGCAGGATGAGTTTAGCGCACACTT
CGCCTACCTGAGAGACCCACAATCGTCACCTCTCCCATCGAAGGAATCTA
AGTATACCAATAATCACTTCTTTTTGAACGAGGGCATGCTGTTTCGTTCG
TATTTGCCTGGACCCCTGCGGAAACGGTCTGACTTCCATGATCAACTGGT
TGTCCCCGGCTCCTTGCGCGCCCGTGTCATTACTTCGTTTCATGACTGAA
TGCTTGACCGTTGGTCGATCCAACCTCAGAGTTTTGGCTTCACCGTCAAG
CACTTGCCCGGGAAATTAAACGTTGTTCCCGACGCCCTTTCGCGGTTGTT
TAGTGAAGAACTGCATGGAGAACTCGTTCCATCGGAGCCACGGTTGGCTG
CTATTTGTCGGAATGTCTCTCATGATCAATGGTGTTCCCCACGGGCGCCC
CCAGAGTATGAAGTGTCCGTTCACACTTTAAACGATATCGTACCCGTTGA
GAGCTACCGTGACTTCTTCTCTAGCGCTGTTTCCGTTTTCCCTGTTGGTG
ACACTGCACAAATCGCGGCAAGGAGGCAGGATGAGTTTAGCGCACACTTC
GCCTACCTGAGAGACCCACAATCGTCACCTCTCCCATCGAAGGAATCTAA
GTATACCAATAATCACTTCTTTTTGAACGAGGGCATGCTGTTTCGTTCGT
ATTTGCCTGGACCCCTGCGGAAACGGTCTGACTTCCATGATCAACTGGTT
GTCCCCGGCTCCTTGCGCGCCCGTGTCATTACTTCGTTTCATGACTGA
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