mRNA_H-paniculata_contig9353.17128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9353.17128.1
Unique NamemRNA_H-paniculata_contig9353.17128.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.000e-32
Identity = 91/167 (54.49%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:    1 QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSSPSVSLLPGDTLDVQVECLALAGARLPPEFLPLP-PSSEEDSADT-ATIMEAGATVLAHGCSGSGTGSFCDWDLDARLMGTVRVEIALEGRLSGGPDDFSGAGEQGPVPGQGEGTLIE 495
            +NVS E VSV + V PA EV G+LSLGA MQ QDSS+GVYA   ADGRSSP V+LLPGD LDVQ ECLAL GARLPPE +P P P+  E+   T AT+  A  T               DW    RLMGTVRVEIALE  L        G G+ G   GQ EG L+E
Sbjct: 2045 KNVSGETVSVMLGVTPAPEVVGVLSLGASMQ-QDSSTGVYASVGADGRSSPPVALLPGDVLDVQAECLALPGARLPPELIPPPGPNLAEEGGGTEATMFGAPGTA--------------DWGQHMRLMGTVRVEIALED-LDDVVPGAGGGGDGGS--GQEEGVLVE 2193
[Close]
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.020e-32
Identity = 92/180 (51.11%), Postives = 105/180 (58.33%), Query Frame = 1 
Query:    1 QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSSPSVSLLPGDTLDVQVECLALAGARLPPEFLPLP-PSSEEDSADTATIMEAGATVLAHGCSGSGTGSFCDWDLDARLMGTVRVEIALEGRLSGGPDDFS------GAGEQGPVP--------GQGEGTLIE 495
            +NVS E VSV + V PA EVAG+LSLGA MQ QDSS+GVYA   ADGRSSP+V+LLPGD LDVQ ECLAL GARLPPE +P P P+  E+   T   M              G  +  DW    RL+GTVRVEIALE R +G PD         GAG              GQ EG L+E
Sbjct: 3780 KNVSGETVSVMLGVMPAPEVAGVLSLGASMQ-QDSSAGVYASVGADGRSSPAVALLPGDVLDVQAECLALPGARLPPELIPPPEPNLAEEGGGTEAAM-------------FGVPATSDWGQHMRLVGTVRVEIALEDR-AGDPDQLDLDDVAPGAGXXXXXXXXXXXXXXGQEEGVLVE 3944
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE3.000e-3254.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI3.020e-3251.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9353contigH-paniculata_contig9353:5286..5782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D8LHH6
Hectar predicted targeting categoryother localisation
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size497
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.4481487-CDS-H-paniculata_contig9353:5285..57801622931163.4481487-CDS-H-paniculata_contig9353:5285..5780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 5286..5780 +
1691481618.9952133-CDS-H-paniculata_contig9353:5285..57801691481618.9952133-CDS-H-paniculata_contig9353:5285..5780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 5286..5780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9353.17128.1prot_H-paniculata_contig9353.17128.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9353 5286..5780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9353.17128.1

>prot_H-paniculata_contig9353.17128.1 ID=prot_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSS
PSVSLLPGDTLDVQVECLALAGARLPPEFLPLPPSSEEDSADTATIMEAG
ATVLAHGCSGSGTGSFCDWDLDARLMGTVRVEIALEGRLSGGPDDFSGAG
EQGPVPGQGEGTLIE
back to top

mRNA from alignment at H-paniculata_contig9353:5286..5782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9353.17128.1 ID=mRNA_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=497bp|location=Sequence derived from alignment at H-paniculata_contig9353:5286..5782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACGTGTCGGACGAGCCTGTTTCGGTGAAGGTATGCGTAGCGCCGGC
CGTGGAAGTCGCTGGCTTGCTTTCCCTGGGAGCGTACATGCAGCACCAAG
ACTCTTCAAGTGGCGTCTACGCCTTAACGAGCGCGGACGGCCGCTCGTCT
CCAAGTGTGTCCTTGCTTCCGGGAGATACATTGGACGTTCAAGTGGAATG
CCTCGCGCTTGCCGGGGCTCGGCTACCGCCAGAGTTTCTTCCTCTGCCAC
CTTCATCGGAAGAAGATTCTGCAGACACGGCTACAATAATGGAGGCCGGG
GCGACCGTTTTGGCGCATGGATGCAGTGGATCGGGGACCGGGAGTTTTTG
TGACTGGGACCTCGACGCCCGTCTCATGGGGACCGTACGAGTGGAGATTG
CCCTGGAAGGGCGATTAAGCGGTGGGCCCGACGATTTCTCTGGCGCCGGA
GAGCAAGGGCCCGTACCAGGGCAAGGAGAAGGAACCCTGATCGAGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9353:5286..5782+

>mRNA_H-paniculata_contig9353.17128.1 ID=mRNA_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig9353:5286..5782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACGTGTCGGACGAGCCTGTTTCGGTGAAGGTATGCGTAGCGCCGGC
CGTGGAAGTCGCTGGCTTGCTTTCCCTGGGAGCGTACATGCAGCACCAAG
ACTCTTCAAGTGGCGTCTACGCCTTAACGAGCGCGGACGGCCGCTCGTCT
CCAAGTGTGTCCTTGCTTCCGGGAGATACATTGGACGTTCAAGTGGAATG
CCTCGCGCTTGCCGGGGCTCGGCTACCGCCAGAGTTTCTTCCTCTGCCAC
CTTCATCGGAAGAAGATTCTGCAGACACGGCTACAATAATGGAGGCCGGG
GCGACCGTTTTGGCGCATGGATGCAGTGGATCGGGGACCGGGAGTTTTTG
TGACTGGGACCTCGACGCCCGTCTCATGGGGACCGTACGAGTGGAGATTG
CCCTGGAAGGGCGATTAAGCGGTGGGCCCGACGATTTCTCTGGCGCCGGA
GAGCAAGGGCCCGTACCAGGGCAAGGAGAAGGAACCCTGATCGAGCAGAA
CGTGTCGGACGAGCCTGTTTCGGTGAAGGTATGCGTAGCGCCGGCCGTGG
AAGTCGCTGGCTTGCTTTCCCTGGGAGCGTACATGCAGCACCAAGACTCT
TCAAGTGGCGTCTACGCCTTAACGAGCGCGGACGGCCGCTCGTCTCCAAG
TGTGTCCTTGCTTCCGGGAGATACATTGGACGTTCAAGTGGAATGCCTCG
CGCTTGCCGGGGCTCGGCTACCGCCAGAGTTTCTTCCTCTGCCACCTTCA
TCGGAAGAAGATTCTGCAGACACGGCTACAATAATGGAGGCCGGGGCGAC
CGTTTTGGCGCATGGATGCAGTGGATCGGGGACCGGGAGTTTTTGTGACT
GGGACCTCGACGCCCGTCTCATGGGGACCGTACGAGTGGAGATTGCCCTG
GAAGGGCGATTAAGCGGTGGGCCCGACGATTTCTCTGGCGCCGGAGAGCA
AGGGCCCGTACCAGGGCAAGGAGAAGGAACCCTGATCGAG
back to top